IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
244	 69.57	0	262365..262949	+	194	115358214	-	Bamb_3464	-	hypothetical protein
245	 66.56	0	263027..263929	+	300	115358215	-	Bamb_3465	-	hypothetical protein
246	 64.75	0	263965..264330	+	121	115358216	-	Bamb_3466	-	response regulator receiver protein
247	 64.49	0	264557..265660	-	367	115358217	-	Bamb_3467	-	ImpA domain-containing protein
248	 64.80	0	265657..266730	-	357	115358218	-	Bamb_3468	-	hypothetical protein
249	 63.60	0	266730..268619	-	629	115358219	-	Bamb_3469	-	hypothetical protein
250	 65.05	0	268652..269209	-	185	115358220	-	Bamb_3470	-	hypothetical protein
251	 65.96	0	269202..270053	-	283	115358221	-	Bamb_3471	-	virulence protein, SciE type
252	 63.09	0	270050..270496	-	148	115358222	-	Bamb_3472	-	hypothetical protein
253	 65.07	0	271254..273947	+	897	115358223	-	Bamb_3473	-	ATPase
254	 62.43	-1	273986..274528	+	180	115358224	-	Bamb_3474	-	hypothetical protein
255	 61.45	-1	274556..276049	+	497	115358225	-	Bamb_3475	-	hypothetical protein
256	 60.29	-1	276142..276627	+	161	115358226	-	Bamb_3476	-	hypothetical protein
257	 64.30	0	276714..277220	+	168	115358227	-	Bamb_3477	-	hypothetical protein
258	 64.21	0	277252..278595	+	447	115358228	-	Bamb_3478	-	hypothetical protein
259	 60.01	-1	278884..281421	+	845	115358229	-	Bamb_3479	-	Rhs element Vgr protein
260	 56.95	-2	281396..282280	+	294	115358230	-	Bamb_3480	-	hypothetical protein
261	 56.25	-2	282817..284832	+	671	115358231	-	Bamb_3481	-	hypothetical protein
262	 48.06	-2	284825..285754	+	309	115358232	-	Bamb_3482	-	hypothetical protein
263	 55.20	-2	285825..286103	+	92	115358233	-	Bamb_3483	-	PAAR repeat-containing protein
264	 60.82	-1	286100..287398	+	432	115358234	-	Bamb_3484	-	hypothetical protein
265	 63.79	0	287424..291521	+	1365	115358235	-	Bamb_3485	-	ImcF domain-containing protein
266	 65.19	0	291542..292756	+	404	115358236	-	Bamb_3486	-	OmpA/MotB domain-containing protein
267	 66.78	0	292778..293659	-	293	115358237	-	Bamb_3487	-	LysR family transcriptional regulator
268	 68.94	0	293790..295199	+	469	115358238	-	Bamb_3488	-	major facilitator transporter
269	 68.81	0	295318..296112	+	264	115358239	-	Bamb_3489	-	enoyl-CoA hydratase
270	 70.59	0	296261..297382	-	373	115358240	-	Bamb_3490	-	alanine racemase
271	 66.40	0	297686..298057	+	123	115358241	-	Bamb_3491	-	membrane protein-like protein
272	 68.99	0	298100..299047	-	315	115358242	-	Bamb_3492	-	LysR family transcriptional regulator
273	 71.44	+1	299168..302707	+	1179	115358243	-	Bamb_3493	-	ABC transporter related
274	 65.66	0	303195..303392	+	65	115358244	-	Bamb_3494	-	hypothetical protein
275	 70.00	0	303413..304462	+	349	115358245	-	Bamb_3495	-	peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
276	 66.52	0	304478..305812	+	444	115358246	-	Bamb_3496	-	hypothetical protein
277	 67.57	0	305838..306392	+	184	115358247	-	Bamb_3497	-	carboxymuconolactone decarboxylase
278	 63.33	0	306601..307500	+	299	115358248	-	Bamb_3498	-	aspartyl/asparaginyl beta-hydroxylase
279	 73.29	+1	307683..308543	+	286	115358249	-	Bamb_3499	-	hypothetical protein
280	 66.60	0	308658..310256	-	532	115358250	-	Bamb_3500	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
281	 61.88	-1	310379..310942	-	187	115358251	-	Bamb_3501	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
282	 72.02	+1	311263..312270	+	335	115358252	-	Bamb_3502	-	extracellular solute-binding protein
283	 69.09	0	312254..313576	+	440	115358253	-	Bamb_3503	-	sodium:dicarboxylate symporter
284	 72.22	+1	313587..314288	+	233	115358254	-	Bamb_3504	-	aspartate racemase
285	 69.35	0	314373..315266	-	297	115358255	-	Bamb_3505	-	LysR family transcriptional regulator
286	 70.01	0	315444..316610	+	388	115358256	-	Bamb_3506	-	extracellular ligand-binding receptor
287	 68.70	0	316627..317166	+	179	115358257	-	Bamb_3507	-	hypothetical protein
288	 71.28	+1	317159..318415	+	418	115358258	-	Bamb_3508	-	allantoate amidohydrolase
289	 72.40	+1	318426..319262	-	278	115358259	-	Bamb_3509	-	cytochrome c, class I
290	 70.43	0	319615..320916	-	433	115358260	-	Bamb_3510	-	hypothetical protein
291	 67.32	0	320913..322736	-	607	115358261	-	Bamb_3511	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
292	 68.10	0	322859..323347	-	162	115358262	-	Bamb_3512	-	hypothetical protein
293	 63.60	0	323325..324596	-	423	115358263	-	Bamb_3513	-	N-glycosyltransferase PgaC
294	 64.71	0	324593..326686	-	697	115358264	-	Bamb_3514	-	polysaccharide deacetylase
295	 68.80	0	326702..329566	-	954	115358265	-	Bamb_3515	-	hypothetical protein
296	 70.30	0	329671..330441	-	256	115358266	-	Bamb_3516	-	hypothetical protein
297	 65.12	0	330527..330979	-	150	115358267	-	Bamb_3517	-	hypothetical protein
298	 67.47	0	331649..332641	-	330	115358268	-	Bamb_3518	-	LysR family transcriptional regulator
299	 65.69	0	333287..334717	+	476	115358269	-	Bamb_3519	-	hypothetical protein
300	 65.50	0	334782..335723	+	313	115358270	-	Bamb_3520	-	hypothetical protein
301	 69.81	0	335732..336748	+	338	115358271	-	Bamb_3521	-	transglutaminase domain-containing protein
302	 68.96	0	336842..340291	+	1149	115358272	-	Bamb_3522	-	transglutaminase domain-containing protein
303	 71.61	+1	340504..343110	+	868	115358273	-	Bamb_3523	-	hypothetical protein
304	 71.10	+1	343104..344162	+	352	115358274	-	Bamb_3524	-	transglutaminase domain-containing protein
305	 67.03	0	344346..344618	+	90	115358275	-	Bamb_3525	-	hypothetical protein
306	 67.85	0	344686..345618	-	310	115358276	-	Bamb_3526	-	proline iminopeptidase
307	 66.99	0	345867..347093	+	408	115358277	-	Bamb_3527	-	acyltransferase 3
308	 65.60	0	347122..347967	-	281	115358278	-	Bamb_3528	-	hypothetical protein
309	 60.25	-1	347975..348379	-	134	115358279	-	Bamb_3529	-	hypothetical protein
310	 54.99	-2	349061..349951	-	296	115358280	-	Bamb_3530	-	LysR family transcriptional regulator
311	 59.76	-1	350096..350848	+	250	115358281	-	Bamb_3531	-	short chain dehydrogenase
312	 53.70	-2	351110..351826	+	238	115358282	-	Bamb_3532	-	glutathione S-transferase domain-containing protein
313	 64.88	0	352074..353138	-	354	115358283	-	Bamb_3533	-	aminotransferase, class V
314	 69.88	0	353138..354319	-	393	115358284	-	Bamb_3534	-	thiamine pyrophosphate binding domain-containing protein
315	 66.07	0	354316..356001	-	561	115358285	-	Bamb_3535	-	phosphoenolpyruvate phosphomutase
316	 65.76	0	355998..356765	-	255	115358286	-	Bamb_3536	-	sugar nucleotidyltransferase-like protein
317	 72.75	+1	356802..357803	-	333	115358287	-	Bamb_3537	-	hypothetical protein
318	 66.17	0	357800..358609	-	269	115358288	-	Bamb_3538	-	2OG-Fe(II) oxygenase
319	 67.84	0	358606..359286	-	226	115358289	-	Bamb_3539	-	CDP-alcohol phosphatidyltransferase
320	 67.66	0	359926..361440	+	504	115358290	-	Bamb_3540	-	Acetyl-CoA hydrolase
321	 69.48	0	361641..362066	+	141	115358291	-	Bamb_3541	-	MerR family transcriptional regulator
322	 69.40	0	362145..363023	-	292	115358292	-	Bamb_3542	-	helix-hairpin-helix DNA-binding, class 1
323	 72.40	+1	363212..364762	-	516	115358293	-	Bamb_3543	-	RNA polymerase, sigma 38 subunit, RpoS
324	 70.11	0	365070..365534	+	154	115358294	-	Bamb_3544	-	hypothetical protein
325	 73.94	+1	365568..366419	+	283	115358295	-	Bamb_3545	-	SH3 type 3 domain-containing protein
326	 66.99	0	366536..368395	-	619	115358296	-	Bamb_3546	-	dihydroxy-acid dehydratase
327	 69.99	0	368810..369832	-	340	115358297	-	Bamb_3547	-	malate/L-lactate dehydrogenase
328	 72.07	+1	369825..371417	-	530	115358298	-	Bamb_3548	-	aldehyde dehydrogenase
329	 67.16	0	371488..373113	-	541	115358299	-	Bamb_3549	-	amino acid permease-associated region
330	 69.02	0	373741..374676	+	311	115358300	-	Bamb_3550	-	proline racemase
331	 71.63	+1	374673..375800	+	375	115358301	-	Bamb_3551	-	FAD dependent oxidoreductase
332	 71.79	+1	375901..376134	+	77	115358302	-	Bamb_3552	-	ferredoxin
333	 74.31	+1	376131..377399	+	422	115358303	-	Bamb_3553	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
334	 66.38	0	377533..377883	+	116	115358304	-	Bamb_3554	-	ArsR family transcriptional regulator
335	 72.92	+1	377924..378307	+	127	115358305	-	Bamb_3555	-	protein of unknown function DUF395, YeeE/YedE
336	 67.85	0	378309..378731	+	140	115358306	-	Bamb_3556	-	protein of unknown function DUF395, YeeE/YedE
337	 71.23	+1	378856..379206	-	116	115358307	-	Bamb_3557	-	hypothetical protein
338	 69.08	0	379401..380894	+	497	115358308	-	Bamb_3558	-	GntR family transcriptional regulator
339	 69.20	0	381039..381314	-	91	115358309	-	Bamb_3559	-	hypothetical protein
340	 71.94	+1	381411..382757	-	448	115358310	-	Bamb_3560	-	di-haem cytochrome c peroxidase
341	 69.06	0	383231..384694	-	487	115358311	-	Bamb_3561	-	metallophosphoesterase
342	 70.08	0	384875..385723	+	282	115358312	-	Bamb_3562	-	methyltransferase type 11
343	 68.91	0	385766..386077	-	103	115358313	-	Bamb_3563	-	hypothetical protein
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.