IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
182	 66.44	0	199038..199934	+	298	115358152	-	Bamb_3402	-	amidohydrolase 2
183	 69.14	0	199998..200159	-	53	115358153	-	Bamb_3403	-	putative lipoprotein
184	 65.11	0	200225..201382	-	385	115358154	-	Bamb_3404	-	hypothetical protein
185	 59.62	-1	201752..201964	+	70	115358155	-	Bamb_3405	-	hypothetical protein
186	 69.97	0	202016..202318	-	100	115358156	-	Bamb_3406	-	hypothetical protein
187	 65.25	0	202405..202827	-	140	115358157	-	Bamb_3407	-	NUDIX hydrolase
188	 67.53	0	202925..204313	-	462	115358158	-	Bamb_3408	-	uracil-xanthine permease
189	 72.49	+1	204509..205486	-	325	115358159	-	Bamb_3409	-	LysR family transcriptional regulator
190	 67.64	0	205619..206335	+	238	115358160	-	Bamb_3410	-	short-chain dehydrogenase/reductase SDR
191	 65.48	0	206525..206860	+	111	115358161	-	Bamb_3411	-	antibiotic biosynthesis monooxygenase
192	 70.55	0	206857..208014	+	385	115358162	-	Bamb_3412	-	alcohol dehydrogenase
193	 70.77	0	208187..208771	+	194	115358163	-	Bamb_3413	-	hypothetical protein
194	 69.79	0	208792..209784	-	330	115358164	-	Bamb_3414	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
195	 67.16	0	210003..210410	-	135	115358165	-	Bamb_3415	-	hypothetical protein
196	 66.54	0	210851..212437	+	528	115358166	-	Bamb_3416	-	extracellular solute-binding protein
197	 68.65	0	212571..213527	-	318	115358167	-	Bamb_3417	-	taurine dioxygenase
198	 58.89	-1	214248..214427	+	59	115358168	-	Bamb_3418	-	Flp/Fap pilin component
199	 72.92	+1	214516..214995	+	159	115358169	-	Bamb_3419	-	peptidase A24A, prepilin type IV
200	 74.44	+1	215016..216044	+	342	115358170	-	Bamb_3420	-	Flp pilus assembly CpaB
201	 67.68	0	216099..217481	+	460	115358171	-	Bamb_3421	-	type II and III secretion system protein
202	 73.18	+1	217496..217879	+	127	115358172	-	Bamb_3422	-	hypothetical protein
203	 68.22	0	217901..219124	+	407	115358173	-	Bamb_3423	-	response regulator receiver protein
204	 68.50	0	219121..220539	+	472	115358174	-	Bamb_3424	-	type II secretion system protein E
205	 68.71	0	220536..221513	+	325	115358175	-	Bamb_3425	-	type II secretion system protein
206	 70.79	0	221510..222454	+	314	115358176	-	Bamb_3426	-	type II secretion system protein
207	 72.73	+1	222451..223308	+	285	115358177	-	Bamb_3427	-	TPR repeat-containing protein
208	 67.83	0	223305..223733	+	142	115358178	-	Bamb_3428	-	TadE family protein
209	 70.12	0	223726..224766	+	346	115358179	-	Bamb_3429	-	hypothetical protein
210	 70.51	0	224730..226004	-	424	115358180	-	Bamb_3430	-	hypothetical protein
211	 68.06	0	226019..227095	-	358	115358181	-	Bamb_3431	-	glycosyl transferase family protein
212	 71.76	+1	227369..227761	+	130	115358182	-	Bamb_3432	-	hypothetical protein
213	 73.54	+1	227778..228767	-	329	115358183	-	Bamb_3433	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
214	 72.47	+1	228908..229786	-	292	115358184	-	Bamb_3434	-	LysR family transcriptional regulator
215	 58.97	-1	229906..230958	+	350	115358185	-	Bamb_3435	-	IS605 family transposase OrfB
216	 73.41	+1	231076..232632	+	518	115358186	-	Bamb_3436	-	major facilitator transporter
217	 71.87	+1	232692..233864	-	390	115358187	-	Bamb_3437	-	LysR family transcriptional regulator
218	 69.50	0	233959..235227	+	422	115358188	-	Bamb_3438	-	hypothetical protein
219	 62.99	0	235291..236052	-	253	115358189	-	Bamb_3439	-	hypothetical protein
220	 66.07	0	236595..236927	+	110	115358190	-	Bamb_3440	-	hypothetical protein
221	 72.05	+1	237017..237907	-	296	115358191	-	Bamb_3441	-	3-hydroxyisobutyrate dehydrogenase
222	 67.78	0	237922..239448	-	508	115358192	-	Bamb_3442	-	methylmalonate-semialdehyde dehydrogenase
223	 69.47	0	239570..240889	-	439	115358193	-	Bamb_3443	-	major facilitator transporter
224	 69.34	0	241034..242005	+	323	115358194	-	Bamb_3444	-	LysR family transcriptional regulator
225	 61.23	-1	242149..242424	+	91	115358195	-	Bamb_3445	-	hypothetical protein
226	 68.54	0	242450..243250	-	266	115358196	-	Bamb_3446	-	haloacid dehalogenase, type II
227	 59.56	-1	243334..243516	-	60	115358197	-	Bamb_3447	-	hypothetical protein
228	 68.80	0	243731..245980	+	749	115358198	-	Bamb_3448	-	diguanylate cyclase/phosphodiesterase with GAF sensor
229	 69.74	0	245985..247058	-	357	115358199	-	Bamb_3449	-	diguanylate cyclase
230	 73.23	+1	247114..248118	-	334	115358200	-	Bamb_3450	-	chemotaxis-specific methylesterase
231	 61.78	-1	248509..248733	-	74	115358201	-	Bamb_3451	-	hypothetical protein
232	 68.41	0	249026..249715	+	229	115358202	-	Bamb_3452	-	hypothetical protein
233	 67.19	0	249712..250662	+	316	115358203	-	Bamb_3453	-	hypothetical protein
234	 70.09	0	250673..251695	+	340	115358204	-	Bamb_3454	-	hypothetical protein
235	 69.58	0	251847..252911	+	354	115358205	-	Bamb_3455	-	L-asparaginase II
236	 65.79	0	253007..254029	-	340	115358206	-	Bamb_3456	-	LysR family transcriptional regulator
237	 66.95	0	254138..255544	+	468	115358207	aspA	Bamb_3457	-	aspartate ammonia-lyase
238	 67.60	0	255648..257141	+	497	115358208	-	Bamb_3458	-	amino acid permease-associated region
239	 70.03	0	257185..257928	-	247	115358209	-	Bamb_3459	-	phospholipase/carboxylesterase
240	 61.73	-1	258139..258381	+	80	115358210	-	Bamb_3460	-	SpoVT/AbrB domain-containing protein
241	 60.29	-1	258378..258785	+	135	115358211	-	Bamb_3461	-	PilT domain-containing protein
242	 67.67	0	259235..261625	+	796	115358212	-	Bamb_3462	-	putative CheA signal transduction histidine kinases
243	 72.33	+1	261628..262368	+	246	115358213	-	Bamb_3463	-	methyl-accepting chemotaxis sensory transducer
244	 69.57	0	262365..262949	+	194	115358214	-	Bamb_3464	-	hypothetical protein
245	 66.56	0	263027..263929	+	300	115358215	-	Bamb_3465	-	hypothetical protein
246	 64.75	0	263965..264330	+	121	115358216	-	Bamb_3466	-	response regulator receiver protein
247	 64.49	0	264557..265660	-	367	115358217	-	Bamb_3467	-	ImpA domain-containing protein
248	 64.80	0	265657..266730	-	357	115358218	-	Bamb_3468	-	hypothetical protein
249	 63.60	0	266730..268619	-	629	115358219	-	Bamb_3469	-	hypothetical protein
250	 65.05	0	268652..269209	-	185	115358220	-	Bamb_3470	-	hypothetical protein
251	 65.96	0	269202..270053	-	283	115358221	-	Bamb_3471	-	virulence protein, SciE type
252	 63.09	0	270050..270496	-	148	115358222	-	Bamb_3472	-	hypothetical protein
253	 65.07	0	271254..273947	+	897	115358223	-	Bamb_3473	-	ATPase
254	 62.43	-1	273986..274528	+	180	115358224	-	Bamb_3474	-	hypothetical protein
255	 61.45	-1	274556..276049	+	497	115358225	-	Bamb_3475	-	hypothetical protein
256	 60.29	-1	276142..276627	+	161	115358226	-	Bamb_3476	-	hypothetical protein
257	 64.30	0	276714..277220	+	168	115358227	-	Bamb_3477	-	hypothetical protein
258	 64.21	0	277252..278595	+	447	115358228	-	Bamb_3478	-	hypothetical protein
259	 60.01	-1	278884..281421	+	845	115358229	-	Bamb_3479	-	Rhs element Vgr protein
260	 56.95	-2	281396..282280	+	294	115358230	-	Bamb_3480	-	hypothetical protein
261	 56.25	-2	282817..284832	+	671	115358231	-	Bamb_3481	-	hypothetical protein
262	 48.06	-2	284825..285754	+	309	115358232	-	Bamb_3482	-	hypothetical protein
263	 55.20	-2	285825..286103	+	92	115358233	-	Bamb_3483	-	PAAR repeat-containing protein
264	 60.82	-1	286100..287398	+	432	115358234	-	Bamb_3484	-	hypothetical protein
265	 63.79	0	287424..291521	+	1365	115358235	-	Bamb_3485	-	ImcF domain-containing protein
266	 65.19	0	291542..292756	+	404	115358236	-	Bamb_3486	-	OmpA/MotB domain-containing protein
267	 66.78	0	292778..293659	-	293	115358237	-	Bamb_3487	-	LysR family transcriptional regulator
268	 68.94	0	293790..295199	+	469	115358238	-	Bamb_3488	-	major facilitator transporter
269	 68.81	0	295318..296112	+	264	115358239	-	Bamb_3489	-	enoyl-CoA hydratase
270	 70.59	0	296261..297382	-	373	115358240	-	Bamb_3490	-	alanine racemase
271	 66.40	0	297686..298057	+	123	115358241	-	Bamb_3491	-	membrane protein-like protein
272	 68.99	0	298100..299047	-	315	115358242	-	Bamb_3492	-	LysR family transcriptional regulator
273	 71.44	+1	299168..302707	+	1179	115358243	-	Bamb_3493	-	ABC transporter related
274	 65.66	0	303195..303392	+	65	115358244	-	Bamb_3494	-	hypothetical protein
275	 70.00	0	303413..304462	+	349	115358245	-	Bamb_3495	-	peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
276	 66.52	0	304478..305812	+	444	115358246	-	Bamb_3496	-	hypothetical protein
277	 67.57	0	305838..306392	+	184	115358247	-	Bamb_3497	-	carboxymuconolactone decarboxylase
278	 63.33	0	306601..307500	+	299	115358248	-	Bamb_3498	-	aspartyl/asparaginyl beta-hydroxylase
279	 73.29	+1	307683..308543	+	286	115358249	-	Bamb_3499	-	hypothetical protein
280	 66.60	0	308658..310256	-	532	115358250	-	Bamb_3500	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
281	 61.88	-1	310379..310942	-	187	115358251	-	Bamb_3501	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.