IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2239	 62.63	-1	2528697..2529464	+	255	115360209	-	Bamb_5466	-	ABC transporter related
2240	 61.59	-1	2529646..2529921	+	91	115360210	-	Bamb_5467	-	hypothetical protein
2241	 66.90	0	2530259..2531542	+	427	115360211	-	Bamb_5468	-	cyclic nucleotide-binding protein
2242	 67.71	0	2531566..2532330	+	254	115360212	-	Bamb_5469	-	MotA/TolQ/ExbB proton channel
2243	 69.00	0	2532349..2533035	+	228	115360213	-	Bamb_5470	-	OmpA/MotB domain-containing protein
2244	 66.88	0	2533185..2535047	+	620	115360214	-	Bamb_5471	-	methyl-accepting chemotaxis sensory transducer
2245	 67.26	0	2535098..2535937	+	279	115360215	-	Bamb_5472	-	hypothetical protein
2246	 64.04	0	2536020..2537237	-	405	115360216	-	Bamb_5473	-	UDP-N-acetylglucosamine 2-epimerase
2247	 71.79	+1	2537940..2538212	+	90	115360217	-	Bamb_5474	-	hypothetical protein
2248	 67.58	0	2538472..2540001	+	509	115360218	-	Bamb_5475	-	glycosyl transferase family protein
2249	 71.39	+1	2540005..2541000	+	331	115360219	-	Bamb_5476	-	hypothetical protein
2250	 65.15	0	2541224..2542078	+	284	115360220	-	Bamb_5477	-	hypothetical protein
2251	 65.87	0	2542093..2542848	+	251	115360221	-	Bamb_5478	-	hypothetical protein
2252	 64.41	0	2543201..2545369	+	722	115360222	-	Bamb_5479	-	outer membrane protein
2253	 67.13	0	2545461..2546549	+	362	115360223	-	Bamb_5480	-	hypothetical protein
2254	 66.83	0	2546613..2548430	+	605	115360224	-	Bamb_5481	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
2255	 61.45	-1	2548532..2549509	-	325	115360225	-	Bamb_5482	-	hypothetical protein
2256	 65.15	0	2549778..2550239	+	153	115360226	-	Bamb_5483	-	hypothetical protein
2257	 70.38	0	2550303..2551757	-	484	115360227	-	Bamb_5484	-	RND efflux system outer membrane lipoprotein
2258	 66.92	0	2551774..2553348	-	524	115360228	-	Bamb_5485	-	EmrB/QacA family drug resistance transporter
2259	 70.05	0	2553362..2554453	-	363	115360229	-	Bamb_5486	-	secretion protein HlyD family protein
2260	 69.44	0	2554518..2554949	-	143	115360230	-	Bamb_5487	-	MarR family transcriptional regulator
2261	 69.38	0	2555057..2555977	-	306	115360231	-	Bamb_5488	-	LysR family transcriptional regulator
2262	 66.02	0	2556050..2556514	+	154	115360232	-	Bamb_5489	-	MarR family transcriptional regulator
2263	 66.99	0	2556581..2557828	+	415	115360233	-	Bamb_5490	-	hypothetical protein
2264	 68.44	0	2557821..2558270	+	149	115360234	-	Bamb_5491	-	hypothetical protein
2265	 69.07	0	2558280..2559362	-	360	115360235	-	Bamb_5492	-	AraC family transcriptional regulator
2266	 69.03	0	2559438..2561471	+	677	115360236	-	Bamb_5493	-	NADH:flavin oxidoreductase/NADH oxidase
2267	 68.89	0	2561651..2562055	-	134	115360237	-	Bamb_5494	-	hypothetical protein
2268	 67.90	0	2562231..2563124	-	297	115360238	-	Bamb_5495	-	LysR family transcriptional regulator
2269	 66.03	0	2563211..2563996	+	261	115360239	-	Bamb_5496	-	NAD(P)H dehydrogenase (quinone)
2270	 59.79	-1	2564058..2564348	-	96	115360240	-	Bamb_5497	-	muconolactone delta-isomerase
2271	 66.11	0	2564392..2565294	-	300	115360241	-	Bamb_5498	-	catechol 1,2-dioxygenase
2272	 68.34	0	2565331..2566464	-	377	115360242	-	Bamb_5499	-	muconate and chloromuconate cycloisomerases
2273	 69.92	0	2566556..2567446	+	296	115360243	-	Bamb_5500	-	LysR family transcriptional regulator
2274	 70.81	0	2567793..2568758	-	321	115360244	-	Bamb_5501	-	AraC family transcriptional regulator
2275	 63.15	0	2568917..2570251	+	444	115360245	-	Bamb_5502	-	Rieske (2Fe-2S) domain-containing protein
2276	 60.94	-1	2570248..2570736	+	162	115360246	-	Bamb_5503	-	aromatic-ring-hydroxylating dioxygenase, beta subunit
2277	 64.53	0	2570754..2571080	+	108	115360247	-	Bamb_5504	-	Rieske (2Fe-2S) domain-containing protein
2278	 71.66	+1	2571070..2572290	+	406	115360248	-	Bamb_5505	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2279	 66.15	0	2572409..2573764	+	451	115360249	-	Bamb_5506	-	hypothetical protein
2280	 66.67	0	2573816..2574115	-	99	115360250	-	Bamb_5507	-	putative transcriptional regulator
2281	 65.45	0	2574119..2574448	-	109	115360251	-	Bamb_5508	-	hypothetical protein
2282	 63.68	0	2574761..2576401	+	546	115360252	-	Bamb_5509	-	acetolactate synthase
2283	 67.15	0	2576430..2577863	+	477	115360253	-	Bamb_5510	-	aldehyde dehydrogenase
2284	 68.37	0	2578107..2579690	+	527	115360254	-	Bamb_5511	-	Na+/H+ antiporter
2285	 66.40	0	2580266..2581399	+	377	115360255	-	Bamb_5512	-	response regulator receiver sensor signal transduction histidine kinase
2286	 67.08	0	2581520..2583196	+	558	115360256	-	Bamb_5513	-	methyl-accepting chemotaxis sensory transducer
2287	 71.54	+1	2583193..2583705	+	170	115360257	-	Bamb_5514	-	CheW protein
2288	 72.04	+1	2583702..2585264	+	520	115360258	-	Bamb_5515	-	MCP methyltransferase, CheR-type
2289	 71.92	+1	2585295..2586017	+	240	115360259	-	Bamb_5516	-	CheW protein
2290	 71.00	0	2586014..2588323	+	769	115360260	-	Bamb_5517	-	CheA signal transduction histidine kinases
2291	 73.53	+1	2588320..2589339	+	339	115360261	-	Bamb_5518	-	chemotaxis-specific methylesterase
2292	 70.61	0	2589582..2590823	+	413	115360262	-	Bamb_5519	-	Cl- channel, voltage-gated family protein
2293	 63.79	0	2590873..2591532	+	219	115360263	-	Bamb_5520	-	hypothetical protein
2294	 66.15	0	2591529..2592110	+	193	115360264	-	Bamb_5521	-	hypothetical protein
2295	 61.76	-1	2592129..2592842	-	237	115360265	-	Bamb_5522	-	riboflavin synthase subunit alpha
2296	 69.19	0	2593063..2594925	-	620	115360266	-	Bamb_5523	-	ABC transporter related
2297	 69.16	0	2595432..2596313	+	293	115360267	-	Bamb_5524	-	Dyp-type peroxidase family protein
2298	 70.40	0	2596456..2596857	-	133	115360268	-	Bamb_5525	-	OsmC family protein
2299	 70.14	0	2596976..2597896	-	306	115360269	-	Bamb_5526	-	LysR family transcriptional regulator
2300	 67.77	0	2598298..2599389	+	363	115360270	-	Bamb_5527	-	AraC family transcriptional regulator
2301	 67.94	0	2599479..2600654	+	391	115360271	-	Bamb_5528	-	manganese transport protein MntH
2302	 68.84	0	2600727..2601323	+	198	115360272	-	Bamb_5529	-	phosphoesterase, PA-phosphatase related
2303	 69.07	0	2601761..2602549	+	262	115360273	-	Bamb_5530	-	short chain dehydrogenase
2304	 70.60	0	2602585..2603601	+	338	115360274	-	Bamb_5531	-	alcohol dehydrogenase
2305	 69.84	0	2603766..2604269	+	167	115360275	-	Bamb_5532	-	hypothetical protein
2306	 63.11	0	2604279..2605346	-	355	115360276	-	Bamb_5533	-	hypothetical protein
2307	 66.67	0	2605557..2606141	-	194	115360277	-	Bamb_5534	-	hypothetical protein
2308	 69.74	0	2606212..2606601	-	129	115360278	-	Bamb_5535	-	protein of unknown function DUF883, ElaB
2309	 69.69	0	2606939..2608822	-	627	115360279	-	Bamb_5536	-	endonuclease/exonuclease/phosphatase
2310	 67.23	0	2608949..2609302	+	117	115360280	-	Bamb_5537	-	DGPFAETKE family protein
2311	 67.38	0	2609434..2609856	+	140	115360281	-	Bamb_5538	-	DGPFAETKE family protein
2312	 68.82	0	2609883..2610299	+	138	115360282	-	Bamb_5539	-	glyoxalase/bleomycin resistance protein/dioxygenase
2313	 72.26	+1	2610296..2611564	+	422	115360283	-	Bamb_5540	-	RNA polymerase ECF-subfamily sigma factor
2314	 62.41	-1	2611776..2612198	+	140	115360284	-	Bamb_5541	-	rubrerythrin
2315	 68.09	0	2612324..2613661	+	445	115360285	-	Bamb_5542	-	Fe-S oxidoreductase-like protein
2316	 66.84	0	2613710..2614291	+	193	115360286	-	Bamb_5543	-	hypothetical protein
2317	 68.37	0	2614985..2615926	+	313	115360287	-	Bamb_5544	-	hypothetical protein
2318	 68.04	0	2616048..2617574	-	508	115360288	-	Bamb_5545	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
2319	 64.37	0	2617954..2619387	+	477	115360289	-	Bamb_5546	-	sugar transferase
2320	 68.01	0	2619455..2620867	+	470	115360290	-	Bamb_5547	-	UDP-glucose 6-dehydrogenase
2321	 66.22	0	2620908..2621351	+	147	115360291	-	Bamb_5548	-	protein tyrosine phosphatase
2322	 66.67	0	2621345..2622523	+	392	115360292	-	Bamb_5549	-	polysaccharide export protein
2323	 67.79	0	2622574..2624799	+	741	115360293	-	Bamb_5550	-	hypothetical protein
2324	 71.25	+1	2624861..2625820	+	319	115360294	-	Bamb_5551	-	glycosyl transferase family protein
2325	 70.80	0	2625931..2627067	+	378	115360295	-	Bamb_5552	-	glycosyltransferase-like protein
2326	 66.94	0	2627078..2628544	+	488	115360296	-	Bamb_5553	-	hypothetical protein
2327	 67.93	0	2628541..2629725	+	394	115360297	-	Bamb_5554	-	glycosyl transferase, group 1
2328	 70.01	0	2629725..2630891	+	388	115360298	-	Bamb_5555	-	glycosyl transferase, group 1
2329	 72.33	+1	2631273..2632508	-	411	115360299	-	Bamb_5556	-	major facilitator transporter
2330	 70.06	0	2632661..2633131	+	156	115360300	-	Bamb_5557	-	HxlR family transcriptional regulator
2331	 72.27	+1	2633575..2634342	-	255	115360301	-	Bamb_5558	-	AraC family transcriptional regulator
2332	 66.96	0	2634368..2634709	-	113	115360302	-	Bamb_5559	-	peptidylprolyl isomerase
2333	 65.86	0	2634775..2635023	+	82	115360303	-	Bamb_5560	-	hypothetical protein
2334	 66.99	0	2635290..2636213	+	307	115360304	-	Bamb_5561	-	metal-dependent hydrolase-like protein
2335	 61.85	-1	2636378..2636647	+	89	115360305	-	Bamb_5562	-	hypothetical protein
2336	 66.87	0	2636650..2638122	+	490	115360306	-	Bamb_5563	-	sigma-54 dependent trancsriptional regulator
2337	 69.52	0	2638238..2638903	+	221	115360307	-	Bamb_5564	-	hypothetical protein
2338	 64.37	0	2639127..2639909	-	260	115360308	-	Bamb_5565	-	cationic amino acid ABC transporter, periplasmic binding protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.