IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2099	 69.22	0	2367588..2368604	+	338	115360069	-	Bamb_5326	-	ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein
2100	 67.81	0	2368706..2370016	+	436	115360070	-	Bamb_5327	-	major facilitator transporter
2101	 63.04	0	2370057..2370332	+	91	115360071	-	Bamb_5328	-	hypothetical protein
2102	 70.13	0	2370391..2372178	-	595	115360072	-	Bamb_5329	-	periplasmic sensor signal transduction histidine kinase
2103	 69.60	0	2372175..2372822	-	215	115360073	-	Bamb_5330	-	two component LuxR family transcriptional regulator
2104	 72.15	+1	2373090..2373581	+	163	115360074	-	Bamb_5331	-	hypothetical protein
2105	 73.35	+1	2373684..2375702	+	672	115360075	-	Bamb_5332	-	DedA family membrane protein
2106	 71.21	+1	2375718..2376047	-	109	115360076	-	Bamb_5333	-	putative transcriptional regulator
2107	 62.16	-1	2376044..2376376	-	110	115360077	-	Bamb_5334	-	hypothetical protein
2108	 63.19	0	2376492..2376779	+	95	115360078	-	Bamb_5335	-	hypothetical protein
2109	 71.77	+1	2376938..2379388	-	816	115360079	-	Bamb_5336	-	alpha/beta hydrolase domain-containing protein
2110	 69.94	0	2379375..2381177	-	600	115360080	-	Bamb_5337	-	glucose-methanol-choline oxidoreductase
2111	 59.07	-1	2381195..2382247	+	350	115360081	-	Bamb_5338	-	IS605 family transposase OrfB
2112	 75.36	+2	2382291..2382428	-	45	115360082	-	Bamb_5339	-	hypothetical protein
2113	 69.16	0	2382509..2383630	+	373	115360083	-	Bamb_5340	-	AraC family transcriptional regulator
2114	 68.43	0	2383671..2384180	+	169	115360084	-	Bamb_5341	-	GCN5-related N-acetyltransferase
2115	 67.61	0	2384189..2385142	-	317	115360085	-	Bamb_5342	-	hypothetical protein
2116	 60.98	-1	2385201..2385323	-	40	115360086	-	Bamb_5343	-	hypothetical protein
2117	 73.56	+1	2385951..2387198	+	415	115360087	-	Bamb_5344	-	major facilitator transporter
2118	 69.41	0	2387261..2387806	-	181	115360088	-	Bamb_5345	-	4-hydroxyphenylacetate 3-monooxygenase, reductase subunit
2119	 67.14	0	2388140..2388772	+	210	115360089	-	Bamb_5346	-	two component LuxR family transcriptional regulator
2120	 69.76	0	2388825..2389568	-	247	115360090	-	Bamb_5347	-	short-chain dehydrogenase/reductase SDR
2121	 72.89	+1	2389625..2390749	-	374	115360091	-	Bamb_5348	-	amidase
2122	 72.38	+1	2390782..2391324	-	180	115360092	-	Bamb_5349	-	hypothetical protein
2123	 68.52	0	2391333..2391710	-	125	115360093	-	Bamb_5350	-	hypothetical protein
2124	 72.78	+1	2391764..2392957	-	397	115360094	-	Bamb_5351	-	acyl-CoA dehydrogenase type 2
2125	 69.88	0	2393099..2394652	+	517	115360095	-	Bamb_5352	-	PAS/PAC sensor signal transduction histidine kinase
2126	 70.80	0	2394716..2395102	-	128	115360096	-	Bamb_5353	-	4-oxalocrotonate tautomerase
2127	 65.87	0	2395282..2395785	-	167	115360097	-	Bamb_5354	-	aromatic-ring-hydroxylating dioxygenase, beta subunit
2128	 66.43	0	2395782..2397065	-	427	115360098	-	Bamb_5355	-	Rieske (2Fe-2S) domain-containing protein
2129	 70.03	0	2397205..2398125	+	306	115360099	-	Bamb_5356	-	LysR family transcriptional regulator
2130	 69.72	0	2398177..2399157	-	326	115360100	-	Bamb_5357	-	ferredoxin
2131	 68.74	0	2399313..2400710	-	465	115360101	-	Bamb_5358	-	major facilitator transporter
2132	 70.38	0	2401122..2402252	+	376	115360102	-	Bamb_5359	-	porin
2133	 70.42	0	2402285..2403322	-	345	115360103	-	Bamb_5360	-	LysR family transcriptional regulator
2134	 72.62	+1	2403319..2404293	-	324	115360104	-	Bamb_5361	-	AraC family transcriptional regulator
2135	 71.82	+1	2404443..2405549	+	368	115360105	-	Bamb_5362	-	NAD/NADP octopine/nopaline dehydrogenase
2136	 70.72	0	2405546..2406556	+	336	115360106	-	Bamb_5363	-	3-hydroxybutyryl-CoA dehydrogenase
2137	 70.21	0	2406583..2407965	-	460	115360107	-	Bamb_5364	-	major facilitator transporter
2138	 60.00	-1	2408440..2408709	+	89	115360108	-	Bamb_5365	-	GP29
2139	 61.04	-1	2408710..2412564	+	1284	115360109	-	Bamb_5366	-	Rhs element Vgr protein
2140	 51.23	-2	2412566..2413420	+	284	115360110	-	Bamb_5367	-	hypothetical protein
2141	 51.28	-2	2413612..2413923	+	103	115360111	-	Bamb_5368	-	hypothetical protein
2142	 52.05	-2	2413925..2414779	+	284	115360112	-	Bamb_5369	-	hypothetical protein
2143	 66.57	0	2414978..2416024	-	348	115360113	-	Bamb_5370	-	extracellular solute-binding protein
2144	 72.93	+1	2416021..2417169	-	382	115360114	-	Bamb_5371	-	FAD dependent oxidoreductase
2145	 74.00	+1	2417162..2418607	-	481	115360115	-	Bamb_5372	-	BFD/(2Fe-2S)-binding domain-containing protein
2146	 72.46	+1	2418604..2418948	-	114	115360116	-	Bamb_5373	-	hypothetical protein
2147	 66.54	0	2418951..2419745	-	264	115360117	-	Bamb_5374	-	binding-protein-dependent transport systems inner membrane component
2148	 70.34	0	2419742..2420722	-	326	115360118	-	Bamb_5375	-	binding-protein-dependent transport systems inner membrane component
2149	 68.70	0	2420723..2421805	-	360	115360119	-	Bamb_5376	-	ABC transporter related
2150	 57.83	-2	2421829..2422077	+	82	115360120	-	Bamb_5377	-	hypothetical protein
2151	 71.40	+1	2422098..2422985	+	295	115360121	-	Bamb_5378	-	IclR family transcriptional regulator
2152	 65.42	0	2422986..2423225	+	79	115360122	-	Bamb_5379	-	hypothetical protein
2153	 67.43	0	2423263..2424825	-	520	115360123	-	Bamb_5380	-	methyl-accepting chemotaxis sensory transducer
2154	 66.40	0	2425114..2426592	-	492	115360124	-	Bamb_5381	-	phosphoesterase
2155	 64.38	0	2426682..2427161	+	159	115360125	-	Bamb_5382	-	hypothetical protein
2156	 66.15	0	2427192..2427575	+	127	115360126	-	Bamb_5383	-	hypothetical protein
2157	 72.68	+1	2427783..2429012	-	409	115360127	-	Bamb_5384	-	major facilitator transporter
2158	 71.61	+1	2429226..2430095	-	289	115360128	-	Bamb_5385	-	XRE family transcriptional regulator
2159	 71.92	+1	2430191..2431084	+	297	115360129	-	Bamb_5386	-	3-beta hydroxysteroid dehydrogenase/isomerase
2160	 70.00	0	2431139..2432128	-	329	115360130	-	Bamb_5387	-	alcohol dehydrogenase
2161	 63.53	0	2432515..2435508	+	997	115360131	-	Bamb_5388	-	amino acid adenylation domain-containing protein
2162	 66.22	0	2435537..2436439	-	300	115360132	-	Bamb_5389	-	LysR family transcriptional regulator
2163	 68.92	0	2436536..2437912	-	458	115360133	-	Bamb_5390	-	mercuric reductase
2164	 63.60	0	2438167..2439210	-	347	115360134	-	Bamb_5391	-	LysR family transcriptional regulator
2165	 64.78	0	2439255..2440421	+	388	115360135	-	Bamb_5392	-	mandelate racemase/muconate lactonizing protein
2166	 65.57	0	2440584..2441951	+	455	115360136	-	Bamb_5393	-	sodium:dicarboxylate symporter
2167	 69.87	0	2442019..2442612	-	197	115360137	-	Bamb_5394	-	hypothetical protein
2168	 65.04	0	2442621..2442743	-	40	115360138	-	Bamb_5395	-	GCN5-related N-acetyltransferase
2169	 69.95	0	2442905..2443543	+	212	115360139	-	Bamb_5396	-	lysine exporter protein LysE/YggA
2170	 69.69	0	2443648..2444904	-	418	115360140	-	Bamb_5397	-	hypothetical protein
2171	 72.52	+1	2445047..2445268	+	73	115360141	-	Bamb_5398	-	hypothetical protein
2172	 73.47	+1	2445388..2446137	+	249	115360142	-	Bamb_5399	-	hypothetical protein
2173	 68.77	0	2446148..2449195	+	1015	115360143	-	Bamb_5400	-	hypothetical protein
2174	 69.92	0	2449199..2449843	+	214	115360144	-	Bamb_5401	-	hypothetical protein
2175	 70.22	0	2449840..2450487	+	215	115360145	-	Bamb_5402	-	hypothetical protein
2176	 68.94	0	2450517..2451089	-	190	115360146	-	Bamb_5403	-	NADPH-dependent FMN reductase
2177	 70.03	0	2451144..2451857	-	237	115360147	-	Bamb_5404	-	hypothetical protein
2178	 60.30	-1	2452050..2453102	-	350	115360148	-	Bamb_5405	-	IS605 family transposase OrfB
2179	 66.74	0	2453609..2454892	-	427	115360149	-	Bamb_5406	-	hypothetical protein
2180	 75.12	+2	2455013..2456242	-	409	115360150	-	Bamb_5407	-	triple helix repeat-containing collagen
2181	 67.18	0	2456407..2456985	+	192	115360151	-	Bamb_5408	-	hypothetical protein
2182	 58.44	-2	2457077..2457307	+	76	115360152	-	Bamb_5409	-	hypothetical protein
2183	 69.42	0	2457454..2457852	+	132	115360153	-	Bamb_5410	-	carboxymuconolactone decarboxylase
2184	 71.83	+1	2457930..2458916	-	328	115360154	-	Bamb_5411	-	alpha/beta hydrolase fold
2185	 67.63	0	2458924..2460486	-	520	115360155	-	Bamb_5412	-	FAD dependent oxidoreductase
2186	 72.06	+1	2460483..2461409	-	308	115360156	-	Bamb_5413	-	short-chain dehydrogenase/reductase SDR
2187	 68.19	0	2461497..2462153	+	218	115360157	-	Bamb_5414	-	TetR family transcriptional regulator
2188	 63.26	0	2462465..2462728	-	87	115360158	-	Bamb_5415	-	hypothetical protein
2189	 70.07	0	2462864..2463802	-	312	115360159	-	Bamb_5416	-	LysR family transcriptional regulator
2190	 72.25	+1	2463930..2464574	+	214	115360160	-	Bamb_5417	-	glutathione S-transferase domain-containing protein
2191	 71.63	+1	2464622..2466676	+	684	115360161	-	Bamb_5418	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2192	 60.78	-1	2466798..2467001	+	67	115360162	-	Bamb_5419	-	hypothetical protein
2193	 69.22	0	2467474..2469705	+	743	115360163	-	Bamb_5420	-	TonB-dependent siderophore receptor
2194	 70.59	0	2469765..2470376	+	203	115360164	-	Bamb_5421	-	nicotinamide mononucleotide transporter PnuC
2195	 69.86	0	2470413..2471603	+	396	115360165	-	Bamb_5422	-	aminoglycoside phosphotransferase
2196	 61.05	-1	2471760..2472044	-	94	115360166	-	Bamb_5423	-	hypothetical protein
2197	 65.12	0	2472346..2472603	+	85	115360167	-	Bamb_5424	-	hypothetical protein
2198	 53.47	-2	2472896..2473327	-	143	115360168	-	Bamb_5425	-	hypothetical protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.