IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2044	 66.54	0	2309900..2311540	-	546	115360014	groEL	Bamb_5271	-	chaperonin GroEL
2045	 66.67	0	2311553..2311843	-	96	115360015	groES	Bamb_5272	-	co-chaperonin GroES
2046	 56.03	-2	2312251..2312532	+	93	115360016	-	Bamb_5273	-	hypothetical protein
2047	 59.76	-1	2312532..2312864	+	110	115360017	-	Bamb_5274	-	hypothetical protein
2048	 67.22	0	2313145..2313864	+	239	115360018	-	Bamb_5275	-	short chain dehydrogenase
2049	 68.15	0	2314006..2315955	+	649	115360019	-	Bamb_5276	-	sulfatase
2050	 71.14	+1	2315966..2317015	+	349	115360020	-	Bamb_5277	-	hypothetical protein
2051	 69.51	0	2317012..2317821	+	269	115360021	-	Bamb_5278	-	NLPA lipoprotein
2052	 67.68	0	2317815..2318012	+	65	115360022	-	Bamb_5279	-	hypothetical protein
2053	 65.44	0	2318078..2318404	+	108	115360023	-	Bamb_5280	-	hypothetical protein
2054	 69.88	0	2318467..2319399	-	310	115360024	-	Bamb_5281	-	LysR family transcriptional regulator
2055	 68.35	0	2319605..2320378	+	257	115360025	-	Bamb_5282	-	hypothetical protein
2056	 69.81	0	2320565..2321869	+	434	115360026	-	Bamb_5283	-	major facilitator transporter
2057	 71.04	+1	2321988..2325626	+	1212	115360027	-	Bamb_5284	-	5-oxoprolinase (ATP-hydrolyzing)
2058	 66.17	0	2326301..2328304	+	667	115360028	-	Bamb_5285	-	RNase II stability modulator
2059	 64.24	0	2328362..2329225	-	287	115360029	-	Bamb_5286	-	enoyl-CoA hydratase
2060	 58.73	-2	2329656..2329907	+	83	115360030	-	Bamb_5287	-	hypothetical protein
2061	 64.49	0	2330095..2330415	+	106	115360031	-	Bamb_5288	-	hypothetical protein
2062	 70.71	0	2330752..2331048	-	98	115360032	-	Bamb_5289	-	hypothetical protein
2063	 61.83	-1	2331260..2331445	-	61	115360033	-	Bamb_5290	-	hypothetical protein
2064	 70.55	0	2331777..2333681	+	634	115360034	-	Bamb_5291	-	hypothetical protein
2065	 68.45	0	2333758..2333925	+	55	115360035	-	Bamb_5292	-	hypothetical protein
2066	 71.50	+1	2333997..2335031	-	344	115360036	-	Bamb_5293	-	AraC family transcriptional regulator
2067	 72.11	+1	2335174..2336313	+	379	115360037	-	Bamb_5294	-	major facilitator transporter
2068	 70.44	0	2336467..2337234	-	255	115360038	-	Bamb_5295	-	PEP phosphonomutase
2069	 70.27	0	2337221..2338276	-	351	115360039	-	Bamb_5296	-	saccharopine dehydrogenase
2070	 66.67	0	2338396..2338989	+	197	115360040	-	Bamb_5297	-	TetR family transcriptional regulator
2071	 64.53	0	2339020..2339487	-	155	115360041	-	Bamb_5298	-	MarR family transcriptional regulator
2072	 66.12	0	2339570..2339938	+	122	115360042	-	Bamb_5299	-	hypothetical protein
2073	 64.08	0	2340013..2340630	+	205	115360043	-	Bamb_5300	-	glutathione S-transferase domain-containing protein
2074	 66.80	0	2340679..2341434	-	251	115360044	-	Bamb_5301	-	HAD family hydrolase
2075	 68.52	0	2341431..2342402	-	323	115360045	-	Bamb_5302	-	ornithine cyclodeaminase
2076	 68.52	0	2342537..2343667	-	376	115360046	-	Bamb_5303	-	alanine racemase domain-containing protein
2077	 66.98	0	2343781..2344752	-	323	115360047	-	Bamb_5304	-	LysR family transcriptional regulator
2078	 68.85	0	2344807..2345721	-	304	115360048	-	Bamb_5305	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2079	 67.35	0	2345864..2346304	+	146	115360049	-	Bamb_5306	-	BadM/Rrf2 family transcriptional regulator
2080	 74.11	+1	2346564..2347154	+	196	115360050	-	Bamb_5307	-	hypothetical protein
2081	 71.34	+1	2347151..2348992	+	613	115360051	-	Bamb_5308	-	molecular chaperone-like protein
2082	 72.62	+1	2348998..2351754	+	918	115360052	-	Bamb_5309	-	molecular chaperone-like protein
2083	 68.49	0	2351848..2352888	-	346	115360053	-	Bamb_5310	-	amidinotransferase
2084	 68.43	0	2352909..2353988	-	359	115360054	-	Bamb_5311	-	ornithine cyclodeaminase
2085	 66.20	0	2354293..2354724	+	143	115360055	-	Bamb_5312	-	AsnC family transcriptional regulator
2086	 67.17	0	2354779..2355372	-	197	115360056	-	Bamb_5313	-	uncharacterized peroxidase-related enzyme
2087	 66.48	0	2355369..2355899	-	176	115360057	-	Bamb_5314	-	hypothetical protein
2088	 71.30	+1	2355945..2357369	-	474	115360058	-	Bamb_5315	-	FAD dependent oxidoreductase
2089	 72.58	+1	2357366..2358379	-	337	115360059	-	Bamb_5316	-	LysR family transcriptional regulator
2090	 68.43	0	2358735..2359928	+	397	115360060	-	Bamb_5317	-	extracellular ligand-binding receptor
2091	 69.87	0	2359969..2361780	+	603	115360061	-	Bamb_5318	-	inner-membrane translocator
2092	 72.73	+1	2361792..2362649	+	285	115360062	-	Bamb_5319	-	ABC transporter related
2093	 67.58	0	2362646..2363410	+	254	115360063	-	Bamb_5320	-	ABC transporter related
2094	 63.48	0	2363435..2363998	-	187	115360064	-	Bamb_5321	-	DinB family protein
2095	 66.92	0	2364309..2364710	+	133	115360065	-	Bamb_5322	-	hypothetical protein
2096	 61.97	-1	2364796..2365242	+	148	115360066	-	Bamb_5323	-	hypothetical protein
2097	 68.42	0	2365280..2366701	-	473	115360067	-	Bamb_5324	-	periplasmic sensor signal transduction histidine kinase
2098	 68.02	0	2366688..2367353	-	221	115360068	-	Bamb_5325	-	two component transcriptional regulator
2099	 69.22	0	2367588..2368604	+	338	115360069	-	Bamb_5326	-	ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein
2100	 67.81	0	2368706..2370016	+	436	115360070	-	Bamb_5327	-	major facilitator transporter
2101	 63.04	0	2370057..2370332	+	91	115360071	-	Bamb_5328	-	hypothetical protein
2102	 70.13	0	2370391..2372178	-	595	115360072	-	Bamb_5329	-	periplasmic sensor signal transduction histidine kinase
2103	 69.60	0	2372175..2372822	-	215	115360073	-	Bamb_5330	-	two component LuxR family transcriptional regulator
2104	 72.15	+1	2373090..2373581	+	163	115360074	-	Bamb_5331	-	hypothetical protein
2105	 73.35	+1	2373684..2375702	+	672	115360075	-	Bamb_5332	-	DedA family membrane protein
2106	 71.21	+1	2375718..2376047	-	109	115360076	-	Bamb_5333	-	putative transcriptional regulator
2107	 62.16	-1	2376044..2376376	-	110	115360077	-	Bamb_5334	-	hypothetical protein
2108	 63.19	0	2376492..2376779	+	95	115360078	-	Bamb_5335	-	hypothetical protein
2109	 71.77	+1	2376938..2379388	-	816	115360079	-	Bamb_5336	-	alpha/beta hydrolase domain-containing protein
2110	 69.94	0	2379375..2381177	-	600	115360080	-	Bamb_5337	-	glucose-methanol-choline oxidoreductase
2111	 59.07	-1	2381195..2382247	+	350	115360081	-	Bamb_5338	-	IS605 family transposase OrfB
2112	 75.36	+2	2382291..2382428	-	45	115360082	-	Bamb_5339	-	hypothetical protein
2113	 69.16	0	2382509..2383630	+	373	115360083	-	Bamb_5340	-	AraC family transcriptional regulator
2114	 68.43	0	2383671..2384180	+	169	115360084	-	Bamb_5341	-	GCN5-related N-acetyltransferase
2115	 67.61	0	2384189..2385142	-	317	115360085	-	Bamb_5342	-	hypothetical protein
2116	 60.98	-1	2385201..2385323	-	40	115360086	-	Bamb_5343	-	hypothetical protein
2117	 73.56	+1	2385951..2387198	+	415	115360087	-	Bamb_5344	-	major facilitator transporter
2118	 69.41	0	2387261..2387806	-	181	115360088	-	Bamb_5345	-	4-hydroxyphenylacetate 3-monooxygenase, reductase subunit
2119	 67.14	0	2388140..2388772	+	210	115360089	-	Bamb_5346	-	two component LuxR family transcriptional regulator
2120	 69.76	0	2388825..2389568	-	247	115360090	-	Bamb_5347	-	short-chain dehydrogenase/reductase SDR
2121	 72.89	+1	2389625..2390749	-	374	115360091	-	Bamb_5348	-	amidase
2122	 72.38	+1	2390782..2391324	-	180	115360092	-	Bamb_5349	-	hypothetical protein
2123	 68.52	0	2391333..2391710	-	125	115360093	-	Bamb_5350	-	hypothetical protein
2124	 72.78	+1	2391764..2392957	-	397	115360094	-	Bamb_5351	-	acyl-CoA dehydrogenase type 2
2125	 69.88	0	2393099..2394652	+	517	115360095	-	Bamb_5352	-	PAS/PAC sensor signal transduction histidine kinase
2126	 70.80	0	2394716..2395102	-	128	115360096	-	Bamb_5353	-	4-oxalocrotonate tautomerase
2127	 65.87	0	2395282..2395785	-	167	115360097	-	Bamb_5354	-	aromatic-ring-hydroxylating dioxygenase, beta subunit
2128	 66.43	0	2395782..2397065	-	427	115360098	-	Bamb_5355	-	Rieske (2Fe-2S) domain-containing protein
2129	 70.03	0	2397205..2398125	+	306	115360099	-	Bamb_5356	-	LysR family transcriptional regulator
2130	 69.72	0	2398177..2399157	-	326	115360100	-	Bamb_5357	-	ferredoxin
2131	 68.74	0	2399313..2400710	-	465	115360101	-	Bamb_5358	-	major facilitator transporter
2132	 70.38	0	2401122..2402252	+	376	115360102	-	Bamb_5359	-	porin
2133	 70.42	0	2402285..2403322	-	345	115360103	-	Bamb_5360	-	LysR family transcriptional regulator
2134	 72.62	+1	2403319..2404293	-	324	115360104	-	Bamb_5361	-	AraC family transcriptional regulator
2135	 71.82	+1	2404443..2405549	+	368	115360105	-	Bamb_5362	-	NAD/NADP octopine/nopaline dehydrogenase
2136	 70.72	0	2405546..2406556	+	336	115360106	-	Bamb_5363	-	3-hydroxybutyryl-CoA dehydrogenase
2137	 70.21	0	2406583..2407965	-	460	115360107	-	Bamb_5364	-	major facilitator transporter
2138	 60.00	-1	2408440..2408709	+	89	115360108	-	Bamb_5365	-	GP29
2139	 61.04	-1	2408710..2412564	+	1284	115360109	-	Bamb_5366	-	Rhs element Vgr protein
2140	 51.23	-2	2412566..2413420	+	284	115360110	-	Bamb_5367	-	hypothetical protein
2141	 51.28	-2	2413612..2413923	+	103	115360111	-	Bamb_5368	-	hypothetical protein
2142	 52.05	-2	2413925..2414779	+	284	115360112	-	Bamb_5369	-	hypothetical protein
2143	 66.57	0	2414978..2416024	-	348	115360113	-	Bamb_5370	-	extracellular solute-binding protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.