IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1998	 57.11	-2	2260974..2264144	+	1056	115359968	-	Bamb_5224	-	DNA helicase related protein
1999	 59.01	-1	2264185..2265072	+	295	115359969	-	Bamb_5225	-	hypothetical protein
2000	 58.02	-2	2265966..2267156	-	396	115359970	-	Bamb_5226	-	hypothetical protein
2001	 64.81	0	2267445..2269274	-	609	115359971	-	Bamb_5227	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
2002	 68.29	0	2269431..2269922	+	163	115359972	-	Bamb_5228	-	AsnC family transcriptional regulator
2003	 68.30	0	2269952..2270806	-	284	115359973	-	Bamb_5229	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2004	 68.38	0	2270884..2271702	+	272	115359974	-	Bamb_5230	-	AraC family transcriptional regulator
2005	 66.29	0	2271716..2272249	-	177	115359975	-	Bamb_5231	-	methylated-DNA--protein-cysteine methyltransferase
2006	 64.98	0	2272263..2272736	-	157	115359976	-	Bamb_5232	-	hypothetical protein
2007	 66.43	0	2272733..2273161	-	142	115359977	-	Bamb_5233	-	hypothetical protein
2008	 68.14	0	2273594..2274886	+	430	115359978	-	Bamb_5234	-	major facilitator transporter
2009	 67.37	0	2274986..2275978	-	330	115359979	-	Bamb_5235	-	LacI family transcription regulator
2010	 67.38	0	2276204..2277040	+	278	115359980	-	Bamb_5236	-	NAD-dependent epimerase/dehydratase
2011	 67.16	0	2277060..2277461	-	133	115359981	-	Bamb_5237	-	hypothetical protein
2012	 62.96	0	2277746..2278069	-	107	115359982	-	Bamb_5238	-	hypothetical protein
2013	 68.88	0	2278689..2279321	+	210	115359983	-	Bamb_5239	-	lysine exporter protein LysE/YggA
2014	 65.01	0	2279447..2281075	-	542	115359984	-	Bamb_5240	-	aldehyde dehydrogenase
2015	 67.19	0	2281549..2282502	-	317	115359985	-	Bamb_5241	-	LysR family transcriptional regulator
2016	 65.89	0	2282724..2283752	+	342	115359986	-	Bamb_5242	-	hypothetical protein
2017	 56.57	-2	2283978..2284175	-	65	115359987	-	Bamb_5243	-	CsbD family protein
2018	 62.39	-1	2284229..2284579	-	116	115359988	-	Bamb_5244	-	transport-associated
2019	 71.52	+1	2284651..2284815	-	54	115359989	-	Bamb_5245	-	hypothetical protein
2020	 67.93	0	2284793..2285188	-	131	115359990	-	Bamb_5246	-	hypothetical protein
2021	 67.90	0	2285207..2286751	+	514	115359991	-	Bamb_5247	-	LuxR family transcriptional regulator
2022	 63.02	0	2286917..2287108	+	63	115359992	-	Bamb_5248	-	CsbD family protein
2023	 65.97	0	2287520..2288671	+	383	115359993	-	Bamb_5249	-	extracellular ligand-binding receptor
2024	 64.28	0	2288866..2290038	+	390	115359994	-	Bamb_5250	-	FAD dependent oxidoreductase
2025	 62.73	-1	2290320..2290979	+	219	115359995	-	Bamb_5251	-	heat shock protein DnaJ domain-containing protein
2026	 56.90	-2	2291154..2291921	+	255	115359996	-	Bamb_5252	-	extracellular solute-binding protein
2027	 58.74	-2	2292026..2292643	-	205	115359997	-	Bamb_5253	-	GCN5-related N-acetyltransferase
2028	 55.13	-2	2292919..2293620	-	233	115359998	-	Bamb_5254	-	hypothetical protein
2029	 58.14	-2	2294062..2294448	-	128	115359999	-	Bamb_5255	-	MerR family transcriptional regulator
2030	 59.52	-1	2294535..2295443	+	302	115360000	-	Bamb_5256	-	alpha/beta hydrolase fold
2031	 64.19	0	2295472..2296077	-	201	115360001	-	Bamb_5257	-	LuxR family transcriptional regulator
2032	 63.81	0	2296127..2296651	-	174	115360002	-	Bamb_5258	-	V4R domain-containing protein
2033	 65.48	0	2297687..2299033	-	448	115360003	-	Bamb_5260	-	major facilitator transporter
2034	 59.20	-1	2299404..2300354	+	316	115360004	-	Bamb_5261	-	hypothetical protein
2035	 68.25	0	2300514..2301713	+	399	115360005	-	Bamb_5262	-	aminotransferase, class I and II
2036	 68.34	0	2302019..2302615	+	198	115360006	-	Bamb_5263	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2037	 67.37	0	2302789..2304066	+	425	115360007	-	Bamb_5264	-	epocide hydrolase domain-containing protein
2038	 66.86	0	2304379..2305419	+	346	115360008	-	Bamb_5265	-	alpha/beta hydrolase fold
2039	 68.72	0	2305419..2305955	+	178	115360009	-	Bamb_5266	-	hypothetical protein
2040	 70.76	0	2306233..2306574	+	113	115360010	-	Bamb_5267	-	hypothetical protein
2041	 68.94	0	2306657..2307448	+	263	115360011	-	Bamb_5268	-	hypothetical protein
2042	 69.94	0	2307555..2308958	+	467	115360012	-	Bamb_5269	-	amidase
2043	 68.94	0	2309123..2309737	-	204	115360013	-	Bamb_5270	-	lysine exporter protein LysE/YggA
2044	 66.54	0	2309900..2311540	-	546	115360014	groEL	Bamb_5271	-	chaperonin GroEL
2045	 66.67	0	2311553..2311843	-	96	115360015	groES	Bamb_5272	-	co-chaperonin GroES
2046	 56.03	-2	2312251..2312532	+	93	115360016	-	Bamb_5273	-	hypothetical protein
2047	 59.76	-1	2312532..2312864	+	110	115360017	-	Bamb_5274	-	hypothetical protein
2048	 67.22	0	2313145..2313864	+	239	115360018	-	Bamb_5275	-	short chain dehydrogenase
2049	 68.15	0	2314006..2315955	+	649	115360019	-	Bamb_5276	-	sulfatase
2050	 71.14	+1	2315966..2317015	+	349	115360020	-	Bamb_5277	-	hypothetical protein
2051	 69.51	0	2317012..2317821	+	269	115360021	-	Bamb_5278	-	NLPA lipoprotein
2052	 67.68	0	2317815..2318012	+	65	115360022	-	Bamb_5279	-	hypothetical protein
2053	 65.44	0	2318078..2318404	+	108	115360023	-	Bamb_5280	-	hypothetical protein
2054	 69.88	0	2318467..2319399	-	310	115360024	-	Bamb_5281	-	LysR family transcriptional regulator
2055	 68.35	0	2319605..2320378	+	257	115360025	-	Bamb_5282	-	hypothetical protein
2056	 69.81	0	2320565..2321869	+	434	115360026	-	Bamb_5283	-	major facilitator transporter
2057	 71.04	+1	2321988..2325626	+	1212	115360027	-	Bamb_5284	-	5-oxoprolinase (ATP-hydrolyzing)
2058	 66.17	0	2326301..2328304	+	667	115360028	-	Bamb_5285	-	RNase II stability modulator
2059	 64.24	0	2328362..2329225	-	287	115360029	-	Bamb_5286	-	enoyl-CoA hydratase
2060	 58.73	-2	2329656..2329907	+	83	115360030	-	Bamb_5287	-	hypothetical protein
2061	 64.49	0	2330095..2330415	+	106	115360031	-	Bamb_5288	-	hypothetical protein
2062	 70.71	0	2330752..2331048	-	98	115360032	-	Bamb_5289	-	hypothetical protein
2063	 61.83	-1	2331260..2331445	-	61	115360033	-	Bamb_5290	-	hypothetical protein
2064	 70.55	0	2331777..2333681	+	634	115360034	-	Bamb_5291	-	hypothetical protein
2065	 68.45	0	2333758..2333925	+	55	115360035	-	Bamb_5292	-	hypothetical protein
2066	 71.50	+1	2333997..2335031	-	344	115360036	-	Bamb_5293	-	AraC family transcriptional regulator
2067	 72.11	+1	2335174..2336313	+	379	115360037	-	Bamb_5294	-	major facilitator transporter
2068	 70.44	0	2336467..2337234	-	255	115360038	-	Bamb_5295	-	PEP phosphonomutase
2069	 70.27	0	2337221..2338276	-	351	115360039	-	Bamb_5296	-	saccharopine dehydrogenase
2070	 66.67	0	2338396..2338989	+	197	115360040	-	Bamb_5297	-	TetR family transcriptional regulator
2071	 64.53	0	2339020..2339487	-	155	115360041	-	Bamb_5298	-	MarR family transcriptional regulator
2072	 66.12	0	2339570..2339938	+	122	115360042	-	Bamb_5299	-	hypothetical protein
2073	 64.08	0	2340013..2340630	+	205	115360043	-	Bamb_5300	-	glutathione S-transferase domain-containing protein
2074	 66.80	0	2340679..2341434	-	251	115360044	-	Bamb_5301	-	HAD family hydrolase
2075	 68.52	0	2341431..2342402	-	323	115360045	-	Bamb_5302	-	ornithine cyclodeaminase
2076	 68.52	0	2342537..2343667	-	376	115360046	-	Bamb_5303	-	alanine racemase domain-containing protein
2077	 66.98	0	2343781..2344752	-	323	115360047	-	Bamb_5304	-	LysR family transcriptional regulator
2078	 68.85	0	2344807..2345721	-	304	115360048	-	Bamb_5305	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2079	 67.35	0	2345864..2346304	+	146	115360049	-	Bamb_5306	-	BadM/Rrf2 family transcriptional regulator
2080	 74.11	+1	2346564..2347154	+	196	115360050	-	Bamb_5307	-	hypothetical protein
2081	 71.34	+1	2347151..2348992	+	613	115360051	-	Bamb_5308	-	molecular chaperone-like protein
2082	 72.62	+1	2348998..2351754	+	918	115360052	-	Bamb_5309	-	molecular chaperone-like protein
2083	 68.49	0	2351848..2352888	-	346	115360053	-	Bamb_5310	-	amidinotransferase
2084	 68.43	0	2352909..2353988	-	359	115360054	-	Bamb_5311	-	ornithine cyclodeaminase
2085	 66.20	0	2354293..2354724	+	143	115360055	-	Bamb_5312	-	AsnC family transcriptional regulator
2086	 67.17	0	2354779..2355372	-	197	115360056	-	Bamb_5313	-	uncharacterized peroxidase-related enzyme
2087	 66.48	0	2355369..2355899	-	176	115360057	-	Bamb_5314	-	hypothetical protein
2088	 71.30	+1	2355945..2357369	-	474	115360058	-	Bamb_5315	-	FAD dependent oxidoreductase
2089	 72.58	+1	2357366..2358379	-	337	115360059	-	Bamb_5316	-	LysR family transcriptional regulator
2090	 68.43	0	2358735..2359928	+	397	115360060	-	Bamb_5317	-	extracellular ligand-binding receptor
2091	 69.87	0	2359969..2361780	+	603	115360061	-	Bamb_5318	-	inner-membrane translocator
2092	 72.73	+1	2361792..2362649	+	285	115360062	-	Bamb_5319	-	ABC transporter related
2093	 67.58	0	2362646..2363410	+	254	115360063	-	Bamb_5320	-	ABC transporter related
2094	 63.48	0	2363435..2363998	-	187	115360064	-	Bamb_5321	-	DinB family protein
2095	 66.92	0	2364309..2364710	+	133	115360065	-	Bamb_5322	-	hypothetical protein
2096	 61.97	-1	2364796..2365242	+	148	115360066	-	Bamb_5323	-	hypothetical protein
2097	 68.42	0	2365280..2366701	-	473	115360067	-	Bamb_5324	-	periplasmic sensor signal transduction histidine kinase
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.