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Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969 2346 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 156 62.77 -1 172181..172771 + 196 115358126 - Bamb_3376 - formate dehydrogenase 157 63.71 0 172784..175252 + 822 115358127 - Bamb_3377 - formate dehydrogenase, alpha subunit 158 65.79 0 175263..176177 + 304 115358128 - Bamb_3378 - formate dehydrogenase, beta subunit 159 63.16 0 176174..176800 + 208 115358129 - Bamb_3379 - formate dehydrogenase, gamma subunit 160 67.26 0 176827..177843 + 338 115358130 - Bamb_3380 - formate dehydrogenase accessory protein FdhE 161 70.08 0 177920..179356 + 478 115358131 - Bamb_3381 - selenocysteine synthase 162 71.13 +1 179357..181282 + 641 115358132 - Bamb_3382 - selenocysteine-specific translation elongation factor 163 63.52 0 181580..182596 - 338 115358133 - Bamb_3383 - dTDP-glucose 4,6-dehydratase 164 69.94 0 182593..183477 - 294 115358134 - Bamb_3384 - dTDP-4-dehydrorhamnose reductase 165 68.38 0 183474..184055 - 193 115358135 - Bamb_3385 - dTDP-4-dehydrorhamnose 3,5-epimerase 166 64.10 0 184052..184948 - 298 115358136 - Bamb_3386 - glucose-1-phosphate thymidylyltransferase 167 69.17 0 185048..186445 - 465 115358137 - Bamb_3387 - major facilitator transporter 168 68.47 0 186442..187161 - 239 115358138 - Bamb_3388 - ABC transporter related 169 69.21 0 187158..187943 - 261 115358139 - Bamb_3389 - ABC transporter related 170 71.85 +1 187940..188827 - 295 115358140 - Bamb_3390 - inner-membrane translocator 171 68.12 0 188820..189713 - 297 115358141 - Bamb_3391 - inner-membrane translocator 172 67.39 0 189749..190849 - 366 115358142 - Bamb_3392 - extracellular ligand-binding receptor 173 64.67 0 191168..191518 + 116 115358143 - Bamb_3393 - endoribonuclease L-PSP 174 66.59 0 191596..192840 + 414 115358144 - Bamb_3394 - FAD dependent oxidoreductase 175 69.00 0 192837..193652 + 271 115358145 - Bamb_3395 - Asp/Glu racemase 176 62.25 -1 193742..194443 + 233 115358146 - Bamb_3396 - GntR family transcriptional regulator 177 65.31 0 194598..195482 + 294 115358147 - Bamb_3397 - rhamnosyltransferase 178 66.88 0 195561..196496 + 311 115358148 - Bamb_3398 - dihydrodipicolinate synthetase 179 65.73 0 196602..197780 + 392 115358149 - Bamb_3399 - mandelate racemase/muconate lactonizing protein 180 67.68 0 197799..198587 + 262 115358150 - Bamb_3400 - short-chain dehydrogenase/reductase SDR 181 61.37 -1 198599..198919 + 106 115358151 - Bamb_3401 - L-rhamnose 1-epimerase 182 66.44 0 199038..199934 + 298 115358152 - Bamb_3402 - amidohydrolase 2 183 69.14 0 199998..200159 - 53 115358153 - Bamb_3403 - putative lipoprotein 184 65.11 0 200225..201382 - 385 115358154 - Bamb_3404 - hypothetical protein 185 59.62 -1 201752..201964 + 70 115358155 - Bamb_3405 - hypothetical protein 186 69.97 0 202016..202318 - 100 115358156 - Bamb_3406 - hypothetical protein 187 65.25 0 202405..202827 - 140 115358157 - Bamb_3407 - NUDIX hydrolase 188 67.53 0 202925..204313 - 462 115358158 - Bamb_3408 - uracil-xanthine permease 189 72.49 +1 204509..205486 - 325 115358159 - Bamb_3409 - LysR family transcriptional regulator 190 67.64 0 205619..206335 + 238 115358160 - Bamb_3410 - short-chain dehydrogenase/reductase SDR 191 65.48 0 206525..206860 + 111 115358161 - Bamb_3411 - antibiotic biosynthesis monooxygenase 192 70.55 0 206857..208014 + 385 115358162 - Bamb_3412 - alcohol dehydrogenase 193 70.77 0 208187..208771 + 194 115358163 - Bamb_3413 - hypothetical protein 194 69.79 0 208792..209784 - 330 115358164 - Bamb_3414 - aliphatic sulfonate ABC transporter periplasmic ligand-binding protein 195 67.16 0 210003..210410 - 135 115358165 - Bamb_3415 - hypothetical protein 196 66.54 0 210851..212437 + 528 115358166 - Bamb_3416 - extracellular solute-binding protein 197 68.65 0 212571..213527 - 318 115358167 - Bamb_3417 - taurine dioxygenase 198 58.89 -1 214248..214427 + 59 115358168 - Bamb_3418 - Flp/Fap pilin component 199 72.92 +1 214516..214995 + 159 115358169 - Bamb_3419 - peptidase A24A, prepilin type IV 200 74.44 +1 215016..216044 + 342 115358170 - Bamb_3420 - Flp pilus assembly CpaB 201 67.68 0 216099..217481 + 460 115358171 - Bamb_3421 - type II and III secretion system protein 202 73.18 +1 217496..217879 + 127 115358172 - Bamb_3422 - hypothetical protein 203 68.22 0 217901..219124 + 407 115358173 - Bamb_3423 - response regulator receiver protein 204 68.50 0 219121..220539 + 472 115358174 - Bamb_3424 - type II secretion system protein E 205 68.71 0 220536..221513 + 325 115358175 - Bamb_3425 - type II secretion system protein 206 70.79 0 221510..222454 + 314 115358176 - Bamb_3426 - type II secretion system protein 207 72.73 +1 222451..223308 + 285 115358177 - Bamb_3427 - TPR repeat-containing protein 208 67.83 0 223305..223733 + 142 115358178 - Bamb_3428 - TadE family protein 209 70.12 0 223726..224766 + 346 115358179 - Bamb_3429 - hypothetical protein 210 70.51 0 224730..226004 - 424 115358180 - Bamb_3430 - hypothetical protein 211 68.06 0 226019..227095 - 358 115358181 - Bamb_3431 - glycosyl transferase family protein 212 71.76 +1 227369..227761 + 130 115358182 - Bamb_3432 - hypothetical protein 213 73.54 +1 227778..228767 - 329 115358183 - Bamb_3433 - nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein 214 72.47 +1 228908..229786 - 292 115358184 - Bamb_3434 - LysR family transcriptional regulator 215 58.97 -1 229906..230958 + 350 115358185 - Bamb_3435 - IS605 family transposase OrfB 216 73.41 +1 231076..232632 + 518 115358186 - Bamb_3436 - major facilitator transporter 217 71.87 +1 232692..233864 - 390 115358187 - Bamb_3437 - LysR family transcriptional regulator 218 69.50 0 233959..235227 + 422 115358188 - Bamb_3438 - hypothetical protein 219 62.99 0 235291..236052 - 253 115358189 - Bamb_3439 - hypothetical protein 220 66.07 0 236595..236927 + 110 115358190 - Bamb_3440 - hypothetical protein 221 72.05 +1 237017..237907 - 296 115358191 - Bamb_3441 - 3-hydroxyisobutyrate dehydrogenase 222 67.78 0 237922..239448 - 508 115358192 - Bamb_3442 - methylmalonate-semialdehyde dehydrogenase 223 69.47 0 239570..240889 - 439 115358193 - Bamb_3443 - major facilitator transporter 224 69.34 0 241034..242005 + 323 115358194 - Bamb_3444 - LysR family transcriptional regulator 225 61.23 -1 242149..242424 + 91 115358195 - Bamb_3445 - hypothetical protein 226 68.54 0 242450..243250 - 266 115358196 - Bamb_3446 - haloacid dehalogenase, type II 227 59.56 -1 243334..243516 - 60 115358197 - Bamb_3447 - hypothetical protein 228 68.80 0 243731..245980 + 749 115358198 - Bamb_3448 - diguanylate cyclase/phosphodiesterase with GAF sensor 229 69.74 0 245985..247058 - 357 115358199 - Bamb_3449 - diguanylate cyclase 230 73.23 +1 247114..248118 - 334 115358200 - Bamb_3450 - chemotaxis-specific methylesterase 231 61.78 -1 248509..248733 - 74 115358201 - Bamb_3451 - hypothetical protein 232 68.41 0 249026..249715 + 229 115358202 - Bamb_3452 - hypothetical protein 233 67.19 0 249712..250662 + 316 115358203 - Bamb_3453 - hypothetical protein 234 70.09 0 250673..251695 + 340 115358204 - Bamb_3454 - hypothetical protein 235 69.58 0 251847..252911 + 354 115358205 - Bamb_3455 - L-asparaginase II 236 65.79 0 253007..254029 - 340 115358206 - Bamb_3456 - LysR family transcriptional regulator 237 66.95 0 254138..255544 + 468 115358207 aspA Bamb_3457 - aspartate ammonia-lyase 238 67.60 0 255648..257141 + 497 115358208 - Bamb_3458 - amino acid permease-associated region 239 70.03 0 257185..257928 - 247 115358209 - Bamb_3459 - phospholipase/carboxylesterase 240 61.73 -1 258139..258381 + 80 115358210 - Bamb_3460 - SpoVT/AbrB domain-containing protein 241 60.29 -1 258378..258785 + 135 115358211 - Bamb_3461 - PilT domain-containing protein 242 67.67 0 259235..261625 + 796 115358212 - Bamb_3462 - putative CheA signal transduction histidine kinases 243 72.33 +1 261628..262368 + 246 115358213 - Bamb_3463 - methyl-accepting chemotaxis sensory transducer 244 69.57 0 262365..262949 + 194 115358214 - Bamb_3464 - hypothetical protein 245 66.56 0 263027..263929 + 300 115358215 - Bamb_3465 - hypothetical protein 246 64.75 0 263965..264330 + 121 115358216 - Bamb_3466 - response regulator receiver protein 247 64.49 0 264557..265660 - 367 115358217 - Bamb_3467 - ImpA domain-containing protein 248 64.80 0 265657..266730 - 357 115358218 - Bamb_3468 - hypothetical protein 249 63.60 0 266730..268619 - 629 115358219 - Bamb_3469 - hypothetical protein 250 65.05 0 268652..269209 - 185 115358220 - Bamb_3470 - hypothetical protein 251 65.96 0 269202..270053 - 283 115358221 - Bamb_3471 - virulence protein, SciE type 252 63.09 0 270050..270496 - 148 115358222 - Bamb_3472 - hypothetical protein 253 65.07 0 271254..273947 + 897 115358223 - Bamb_3473 - ATPase 254 62.43 -1 273986..274528 + 180 115358224 - Bamb_3474 - hypothetical protein 255 61.45 -1 274556..276049 + 497 115358225 - Bamb_3475 - hypothetical protein 66.96 MEAN 4.07 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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