IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1969	 68.48	0	2224012..2225826	+	604	115359939	-	Bamb_5194	-	endonuclease/exonuclease/phosphatase
1970	 66.40	0	2226633..2228483	+	616	115359940	-	Bamb_5195	-	peptidase S10, serine carboxypeptidase
1971	 66.20	0	2228528..2228956	+	142	115359941	-	Bamb_5196	-	hypothetical protein
1972	 68.27	0	2229119..2230117	-	332	115359942	-	Bamb_5197	-	AraC family transcriptional regulator
1973	 64.98	0	2230323..2231570	+	415	115359943	-	Bamb_5198	-	FAD-linked oxidoreductase
1974	 66.54	0	2231604..2232383	+	259	115359944	-	Bamb_5199	-	short-chain dehydrogenase/reductase SDR
1975	 64.18	0	2232705..2233952	+	415	115359945	-	Bamb_5200	-	serine hydroxymethyltransferase
1976	 64.28	0	2234102..2235694	-	530	115359946	-	Bamb_5201	-	amino acid permease-associated region
1977	 69.43	0	2236397..2237881	-	494	115359947	-	Bamb_5203	-	aminotransferase, class V
1978	 62.76	-1	2238146..2238478	-	110	115359948	-	Bamb_5204	-	hypothetical protein
1979	 62.40	-1	2238479..2238736	-	85	115359949	-	Bamb_5205	-	PAAR repeat-containing protein
1980	 59.51	-1	2238803..2240143	-	446	115359950	-	Bamb_5206	-	hypothetical protein
1981	 60.25	-1	2240363..2241703	-	446	115359951	-	Bamb_5207	-	hypothetical protein
1982	 59.49	-1	2241838..2244150	-	770	115359952	-	Bamb_5208	-	putative transmembrane protein
1983	 64.97	0	2244169..2246937	-	922	115359953	-	Bamb_5209	-	Rhs element Vgr protein
1984	 68.67	0	2247683..2248933	+	416	115359954	-	Bamb_5210	-	major facilitator transporter
1985	 65.16	0	2249080..2250009	+	309	115359955	-	Bamb_5211	-	LysR family transcriptional regulator
1986	 65.45	0	2250124..2250618	+	164	115359956	-	Bamb_5212	-	hypothetical protein
1987	 64.51	0	2250662..2251681	+	339	115359957	-	Bamb_5213	-	hypothetical protein
1988	 67.69	0	2251714..2253180	+	488	115359958	-	Bamb_5214	-	betaine-aldehyde dehydrogenase
1989	 71.63	+1	2253188..2254255	+	355	115359959	-	Bamb_5215	-	iron-containing alcohol dehydrogenase
1990	 65.64	0	2254284..2255156	+	290	115359960	-	Bamb_5216	-	intradiol ring-cleavage dioxygenase
1991	 66.99	0	2255162..2255473	+	103	115359961	-	Bamb_5217	-	YCII-related
1992	 67.26	0	2255477..2255812	+	111	115359962	-	Bamb_5218	-	Rieske (2Fe-2S) domain-containing protein
1993	 61.98	-1	2256047..2257135	+	362	115359963	-	Bamb_5219	-	porin
1994	 67.27	0	2257208..2257867	-	219	115359964	-	Bamb_5220	-	glutathione S-transferase domain-containing protein
1995	 66.33	0	2257910..2258803	+	297	115359965	-	Bamb_5221	-	AraC family transcriptional regulator
1996	 63.95	0	2259105..2259878	+	257	115359966	-	Bamb_5222	-	hypothetical protein
1997	 56.67	-2	2259975..2260544	-	189	115359967	-	Bamb_5223	-	hypothetical protein
1998	 57.11	-2	2260974..2264144	+	1056	115359968	-	Bamb_5224	-	DNA helicase related protein
1999	 59.01	-1	2264185..2265072	+	295	115359969	-	Bamb_5225	-	hypothetical protein
2000	 58.02	-2	2265966..2267156	-	396	115359970	-	Bamb_5226	-	hypothetical protein
2001	 64.81	0	2267445..2269274	-	609	115359971	-	Bamb_5227	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
2002	 68.29	0	2269431..2269922	+	163	115359972	-	Bamb_5228	-	AsnC family transcriptional regulator
2003	 68.30	0	2269952..2270806	-	284	115359973	-	Bamb_5229	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2004	 68.38	0	2270884..2271702	+	272	115359974	-	Bamb_5230	-	AraC family transcriptional regulator
2005	 66.29	0	2271716..2272249	-	177	115359975	-	Bamb_5231	-	methylated-DNA--protein-cysteine methyltransferase
2006	 64.98	0	2272263..2272736	-	157	115359976	-	Bamb_5232	-	hypothetical protein
2007	 66.43	0	2272733..2273161	-	142	115359977	-	Bamb_5233	-	hypothetical protein
2008	 68.14	0	2273594..2274886	+	430	115359978	-	Bamb_5234	-	major facilitator transporter
2009	 67.37	0	2274986..2275978	-	330	115359979	-	Bamb_5235	-	LacI family transcription regulator
2010	 67.38	0	2276204..2277040	+	278	115359980	-	Bamb_5236	-	NAD-dependent epimerase/dehydratase
2011	 67.16	0	2277060..2277461	-	133	115359981	-	Bamb_5237	-	hypothetical protein
2012	 62.96	0	2277746..2278069	-	107	115359982	-	Bamb_5238	-	hypothetical protein
2013	 68.88	0	2278689..2279321	+	210	115359983	-	Bamb_5239	-	lysine exporter protein LysE/YggA
2014	 65.01	0	2279447..2281075	-	542	115359984	-	Bamb_5240	-	aldehyde dehydrogenase
2015	 67.19	0	2281549..2282502	-	317	115359985	-	Bamb_5241	-	LysR family transcriptional regulator
2016	 65.89	0	2282724..2283752	+	342	115359986	-	Bamb_5242	-	hypothetical protein
2017	 56.57	-2	2283978..2284175	-	65	115359987	-	Bamb_5243	-	CsbD family protein
2018	 62.39	-1	2284229..2284579	-	116	115359988	-	Bamb_5244	-	transport-associated
2019	 71.52	+1	2284651..2284815	-	54	115359989	-	Bamb_5245	-	hypothetical protein
2020	 67.93	0	2284793..2285188	-	131	115359990	-	Bamb_5246	-	hypothetical protein
2021	 67.90	0	2285207..2286751	+	514	115359991	-	Bamb_5247	-	LuxR family transcriptional regulator
2022	 63.02	0	2286917..2287108	+	63	115359992	-	Bamb_5248	-	CsbD family protein
2023	 65.97	0	2287520..2288671	+	383	115359993	-	Bamb_5249	-	extracellular ligand-binding receptor
2024	 64.28	0	2288866..2290038	+	390	115359994	-	Bamb_5250	-	FAD dependent oxidoreductase
2025	 62.73	-1	2290320..2290979	+	219	115359995	-	Bamb_5251	-	heat shock protein DnaJ domain-containing protein
2026	 56.90	-2	2291154..2291921	+	255	115359996	-	Bamb_5252	-	extracellular solute-binding protein
2027	 58.74	-2	2292026..2292643	-	205	115359997	-	Bamb_5253	-	GCN5-related N-acetyltransferase
2028	 55.13	-2	2292919..2293620	-	233	115359998	-	Bamb_5254	-	hypothetical protein
2029	 58.14	-2	2294062..2294448	-	128	115359999	-	Bamb_5255	-	MerR family transcriptional regulator
2030	 59.52	-1	2294535..2295443	+	302	115360000	-	Bamb_5256	-	alpha/beta hydrolase fold
2031	 64.19	0	2295472..2296077	-	201	115360001	-	Bamb_5257	-	LuxR family transcriptional regulator
2032	 63.81	0	2296127..2296651	-	174	115360002	-	Bamb_5258	-	V4R domain-containing protein
2033	 65.48	0	2297687..2299033	-	448	115360003	-	Bamb_5260	-	major facilitator transporter
2034	 59.20	-1	2299404..2300354	+	316	115360004	-	Bamb_5261	-	hypothetical protein
2035	 68.25	0	2300514..2301713	+	399	115360005	-	Bamb_5262	-	aminotransferase, class I and II
2036	 68.34	0	2302019..2302615	+	198	115360006	-	Bamb_5263	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2037	 67.37	0	2302789..2304066	+	425	115360007	-	Bamb_5264	-	epocide hydrolase domain-containing protein
2038	 66.86	0	2304379..2305419	+	346	115360008	-	Bamb_5265	-	alpha/beta hydrolase fold
2039	 68.72	0	2305419..2305955	+	178	115360009	-	Bamb_5266	-	hypothetical protein
2040	 70.76	0	2306233..2306574	+	113	115360010	-	Bamb_5267	-	hypothetical protein
2041	 68.94	0	2306657..2307448	+	263	115360011	-	Bamb_5268	-	hypothetical protein
2042	 69.94	0	2307555..2308958	+	467	115360012	-	Bamb_5269	-	amidase
2043	 68.94	0	2309123..2309737	-	204	115360013	-	Bamb_5270	-	lysine exporter protein LysE/YggA
2044	 66.54	0	2309900..2311540	-	546	115360014	groEL	Bamb_5271	-	chaperonin GroEL
2045	 66.67	0	2311553..2311843	-	96	115360015	groES	Bamb_5272	-	co-chaperonin GroES
2046	 56.03	-2	2312251..2312532	+	93	115360016	-	Bamb_5273	-	hypothetical protein
2047	 59.76	-1	2312532..2312864	+	110	115360017	-	Bamb_5274	-	hypothetical protein
2048	 67.22	0	2313145..2313864	+	239	115360018	-	Bamb_5275	-	short chain dehydrogenase
2049	 68.15	0	2314006..2315955	+	649	115360019	-	Bamb_5276	-	sulfatase
2050	 71.14	+1	2315966..2317015	+	349	115360020	-	Bamb_5277	-	hypothetical protein
2051	 69.51	0	2317012..2317821	+	269	115360021	-	Bamb_5278	-	NLPA lipoprotein
2052	 67.68	0	2317815..2318012	+	65	115360022	-	Bamb_5279	-	hypothetical protein
2053	 65.44	0	2318078..2318404	+	108	115360023	-	Bamb_5280	-	hypothetical protein
2054	 69.88	0	2318467..2319399	-	310	115360024	-	Bamb_5281	-	LysR family transcriptional regulator
2055	 68.35	0	2319605..2320378	+	257	115360025	-	Bamb_5282	-	hypothetical protein
2056	 69.81	0	2320565..2321869	+	434	115360026	-	Bamb_5283	-	major facilitator transporter
2057	 71.04	+1	2321988..2325626	+	1212	115360027	-	Bamb_5284	-	5-oxoprolinase (ATP-hydrolyzing)
2058	 66.17	0	2326301..2328304	+	667	115360028	-	Bamb_5285	-	RNase II stability modulator
2059	 64.24	0	2328362..2329225	-	287	115360029	-	Bamb_5286	-	enoyl-CoA hydratase
2060	 58.73	-2	2329656..2329907	+	83	115360030	-	Bamb_5287	-	hypothetical protein
2061	 64.49	0	2330095..2330415	+	106	115360031	-	Bamb_5288	-	hypothetical protein
2062	 70.71	0	2330752..2331048	-	98	115360032	-	Bamb_5289	-	hypothetical protein
2063	 61.83	-1	2331260..2331445	-	61	115360033	-	Bamb_5290	-	hypothetical protein
2064	 70.55	0	2331777..2333681	+	634	115360034	-	Bamb_5291	-	hypothetical protein
2065	 68.45	0	2333758..2333925	+	55	115360035	-	Bamb_5292	-	hypothetical protein
2066	 71.50	+1	2333997..2335031	-	344	115360036	-	Bamb_5293	-	AraC family transcriptional regulator
2067	 72.11	+1	2335174..2336313	+	379	115360037	-	Bamb_5294	-	major facilitator transporter
2068	 70.44	0	2336467..2337234	-	255	115360038	-	Bamb_5295	-	PEP phosphonomutase
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.