IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1883	 63.69	0	2136350..2137087	-	245	115359853	-	Bamb_5108	-	fucose-binding lectin II
1884	 62.06	-1	2138008..2138289	+	93	115359854	-	Bamb_5109	-	hypothetical protein
1885	 62.41	-1	2138357..2139790	-	477	115359855	-	Bamb_5110	-	hypothetical protein
1886	 67.47	0	2139787..2141154	-	455	115359856	-	Bamb_5111	-	hypothetical protein
1887	 66.82	0	2141151..2142443	-	430	115359857	-	Bamb_5112	-	hypothetical protein
1888	 66.84	0	2142431..2143579	-	382	115359858	-	Bamb_5113	-	glycosyl transferase, group 1
1889	 67.12	0	2143569..2144663	-	364	115359859	-	Bamb_5114	-	hypothetical protein
1890	 65.35	0	2144650..2145711	-	353	115359860	-	Bamb_5115	-	glycosyl transferase, group 1
1891	 66.05	0	2145708..2147975	-	755	115359861	-	Bamb_5116	-	exopolysaccharide transport protein family
1892	 64.61	0	2147986..2148423	-	145	115359862	-	Bamb_5117	-	protein tyrosine phosphatase
1893	 70.77	0	2148471..2149517	-	348	115359863	-	Bamb_5118	-	polysaccharide export protein
1894	 66.45	0	2149719..2151125	-	468	115359864	-	Bamb_5119	-	sugar transferase
1895	 70.00	0	2151773..2152582	-	269	115359865	-	Bamb_5120	-	redoxin domain-containing protein
1896	 60.24	-1	2152871..2153461	-	196	115359866	-	Bamb_5121	-	hypothetical protein
1897	 60.73	-1	2153554..2154615	+	353	115359867	-	Bamb_5122	-	IS605 family transposase OrfB
1898	 69.65	0	2154860..2155864	-	334	115359868	-	Bamb_5123	-	hypothetical protein
1899	 69.97	0	2156170..2156895	+	241	115359869	-	Bamb_5124	-	methyltransferase type 11
1900	 64.57	0	2156927..2157403	-	158	115359870	-	Bamb_5125	-	GCN5-related N-acetyltransferase
1901	 72.89	+1	2157535..2159013	+	492	115359871	-	Bamb_5126	-	GntR family transcriptional regulator
1902	 69.08	0	2159068..2160105	-	345	115359872	-	Bamb_5127	-	aldo/keto reductase
1903	 73.65	+1	2160235..2161122	+	295	115359873	-	Bamb_5128	-	LysR family transcriptional regulator
1904	 65.33	0	2161310..2161609	+	99	115359874	-	Bamb_5129	-	ArsR family transcriptional regulator
1905	 71.32	+1	2161630..2162982	+	450	115359875	-	Bamb_5130	-	pyridoxal-dependent decarboxylase
1906	 61.54	-1	2163215..2163682	+	155	115359876	-	Bamb_5131	-	cupin 2 domain-containing protein
1907	 70.80	0	2163752..2164573	+	273	115359877	-	Bamb_5132	-	short-chain dehydrogenase/reductase SDR
1908	 68.37	0	2164679..2165500	-	273	115359878	-	Bamb_5133	-	stationary-phase survival protein SurE
1909	 68.32	0	2165646..2165948	-	100	115359879	-	Bamb_5134	-	branched-chain amino acid transport
1910	 68.70	0	2165938..2166675	-	245	115359880	-	Bamb_5135	-	AzlC family protein
1911	 62.36	-1	2166725..2167258	+	177	115359881	-	Bamb_5136	-	AsnC family transcriptional regulator
1912	 64.72	0	2167377..2168045	+	222	115359882	-	Bamb_5137	-	hypothetical protein
1913	 68.60	0	2168195..2168920	+	241	115359883	-	Bamb_5138	-	hypothetical protein
1914	 63.89	0	2169003..2169290	-	95	115359884	-	Bamb_5139	-	XRE family transcriptional regulator
1915	 69.67	0	2169446..2170078	-	210	115359885	-	Bamb_5140	-	lysine exporter protein LysE/YggA
1916	 70.14	0	2170280..2171143	-	287	115359886	-	Bamb_5141	-	hypothetical protein
1917	 64.56	0	2171150..2171482	-	110	115359887	-	Bamb_5142	-	hypothetical protein
1918	 68.81	0	2171700..2172026	+	108	115359888	-	Bamb_5143	-	hypothetical protein
1919	 65.00	0	2172037..2172456	+	139	115359889	-	Bamb_5144	-	hypothetical protein
1920	 66.67	0	2172511..2174322	-	603	115359890	-	Bamb_5145	-	periplasmic sensor hybrid histidine kinase
1921	 64.87	0	2174332..2174832	-	166	115359891	-	Bamb_5146	-	oxidoreductase, molybdopterin binding
1922	 66.44	0	2174894..2175787	-	297	115359892	-	Bamb_5147	-	response regulator receiver protein
1923	 61.90	-1	2176144..2176731	+	195	115359893	-	Bamb_5148	-	Sel1 domain-containing protein
1924	 69.32	0	2176854..2177681	+	275	115359894	-	Bamb_5149	-	hypothetical protein
1925	 65.98	0	2177802..2178818	+	338	115359895	-	Bamb_5150	-	hypothetical protein
1926	 69.53	0	2179199..2182267	+	1022	115359896	-	Bamb_5151	-	periplasmic sensor hybrid histidine kinase
1927	 61.52	-1	2182919..2183578	+	219	115359897	-	Bamb_5152	-	two component LuxR family transcriptional regulator
1928	 67.43	0	2183660..2186668	+	1002	115359898	-	Bamb_5153	-	multi-sensor hybrid histidine kinase
1929	 70.18	0	2186674..2186901	+	75	115359899	-	Bamb_5154	-	hypothetical protein
1930	 66.27	0	2187021..2188037	-	338	115359900	-	Bamb_5155	-	1-aminocyclopropane-1-carboxylate deaminase
1931	 64.27	0	2188235..2188735	+	166	115359901	-	Bamb_5156	-	AsnC family transcriptional regulator
1932	 67.89	0	2189002..2190723	+	573	115359902	-	Bamb_5157	-	pyruvate dehydrogenase
1933	 67.97	0	2190720..2191025	+	101	115359903	-	Bamb_5158	-	hypothetical protein
1934	 70.39	0	2191181..2191771	+	196	115359904	-	Bamb_5159	-	methyltransferase type 11
1935	 66.67	0	2191829..2192965	-	378	115359905	-	Bamb_5160	-	acyltransferase 3
1936	 70.19	0	2193420..2193986	+	188	115359906	-	Bamb_5161	-	hypothetical protein
1937	 67.01	0	2194017..2194892	-	291	115359907	-	Bamb_5162	-	LysR family transcriptional regulator
1938	 67.80	0	2195056..2196381	+	441	115359908	-	Bamb_5163	-	uncharacterized membrane-anchored protein
1939	 59.20	-1	2196412..2196612	+	66	115359909	-	Bamb_5164	-	hypothetical protein
1940	 54.78	-2	2196658..2197128	-	156	115359910	-	Bamb_5165	-	hypothetical protein
1941	 53.91	-2	2197146..2197631	-	161	115359911	-	Bamb_5166	-	hypothetical protein
1942	 67.13	0	2198142..2198576	+	144	115359912	-	Bamb_5167	-	GCN5-related N-acetyltransferase
1943	 67.11	0	2198592..2199488	-	298	115359913	-	Bamb_5168	-	LysR family transcriptional regulator
1944	 68.19	0	2199611..2200399	+	262	115359914	-	Bamb_5169	-	trans-aconitate 2-methyltransferase
1945	 69.54	0	2200442..2201032	-	196	115359915	-	Bamb_5170	-	GCN5-related N-acetyltransferase
1946	 65.93	0	2201569..2201973	+	134	115359916	-	Bamb_5171	-	hypothetical protein
1947	 67.62	0	2202212..2203048	-	278	115359917	-	Bamb_5172	-	LuxR family transcriptional regulator
1948	 65.68	0	2203132..2203536	-	134	115359918	-	Bamb_5173	-	hypothetical protein
1949	 68.79	0	2203533..2204942	-	469	115359919	-	Bamb_5174	-	major facilitator transporter
1950	 67.60	0	2205137..2205997	-	286	115359920	-	Bamb_5175	-	hypothetical protein
1951	 60.81	-1	2206046..2206438	-	130	115359921	-	Bamb_5176	-	hypothetical protein
1952	 66.95	0	2206435..2206791	-	118	115359922	-	Bamb_5177	-	HxlR family transcriptional regulator
1953	 66.67	0	2206932..2207567	+	211	115359923	-	Bamb_5178	-	glutathione S-transferase domain-containing protein
1954	 63.78	0	2207646..2208026	+	126	115359924	-	Bamb_5179	-	hypothetical protein
1955	 69.61	0	2208118..2209410	+	430	115359925	-	Bamb_5180	-	outer membrane efflux protein
1956	 69.50	0	2209422..2210939	+	505	115359926	-	Bamb_5181	-	RND family efflux transporter MFP subunit
1957	 68.38	0	2210936..2214142	+	1068	115359927	-	Bamb_5182	-	CzcA family heavy metal efflux protein
1958	 65.03	0	2214139..2214504	+	121	115359928	-	Bamb_5183	-	RND family efflux transporter MFP subunit
1959	 67.06	0	2214628..2215638	-	336	115359929	-	Bamb_5184	-	sodium/calcium exchanger membrane region
1960	 69.42	0	2216032..2217447	-	471	115359930	-	Bamb_5185	-	heavy metal sensor signal transduction histidine kinase
1961	 64.88	0	2217444..2218115	-	223	115359931	-	Bamb_5186	-	two component heavy metal response transcriptional regulator
1962	 67.03	0	2218226..2218780	+	184	115359932	-	Bamb_5187	-	hypothetical protein
1963	 71.38	+1	2218875..2219171	+	98	115359933	-	Bamb_5188	-	hypothetical protein
1964	 69.66	0	2219168..2220739	+	523	115359934	-	Bamb_5189	-	outer membrane efflux protein
1965	 67.82	0	2220741..2222036	+	431	115359935	-	Bamb_5190	-	multicopper oxidase, type 2; multicopper oxidase, type 3
1966	 63.25	0	2222116..2222466	+	116	115359936	-	Bamb_5191	-	hypothetical protein
1967	 68.69	0	2222481..2222876	+	131	115359937	-	Bamb_5192	-	copper resistance protein CopC
1968	 71.34	+1	2222873..2223814	+	313	115359938	-	Bamb_5193	-	copper resistance D domain-containing protein
1969	 68.48	0	2224012..2225826	+	604	115359939	-	Bamb_5194	-	endonuclease/exonuclease/phosphatase
1970	 66.40	0	2226633..2228483	+	616	115359940	-	Bamb_5195	-	peptidase S10, serine carboxypeptidase
1971	 66.20	0	2228528..2228956	+	142	115359941	-	Bamb_5196	-	hypothetical protein
1972	 68.27	0	2229119..2230117	-	332	115359942	-	Bamb_5197	-	AraC family transcriptional regulator
1973	 64.98	0	2230323..2231570	+	415	115359943	-	Bamb_5198	-	FAD-linked oxidoreductase
1974	 66.54	0	2231604..2232383	+	259	115359944	-	Bamb_5199	-	short-chain dehydrogenase/reductase SDR
1975	 64.18	0	2232705..2233952	+	415	115359945	-	Bamb_5200	-	serine hydroxymethyltransferase
1976	 64.28	0	2234102..2235694	-	530	115359946	-	Bamb_5201	-	amino acid permease-associated region
1977	 69.43	0	2236397..2237881	-	494	115359947	-	Bamb_5203	-	aminotransferase, class V
1978	 62.76	-1	2238146..2238478	-	110	115359948	-	Bamb_5204	-	hypothetical protein
1979	 62.40	-1	2238479..2238736	-	85	115359949	-	Bamb_5205	-	PAAR repeat-containing protein
1980	 59.51	-1	2238803..2240143	-	446	115359950	-	Bamb_5206	-	hypothetical protein
1981	 60.25	-1	2240363..2241703	-	446	115359951	-	Bamb_5207	-	hypothetical protein
1982	 59.49	-1	2241838..2244150	-	770	115359952	-	Bamb_5208	-	putative transmembrane protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.