IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1851	 56.30	-2	2100148..2100417	-	89	115359821	-	Bamb_5076	-	hypothetical protein
1852	 68.35	0	2100474..2101184	+	236	115359822	-	Bamb_5077	-	phosphoglycerate mutase
1853	 68.34	0	2101162..2102235	+	357	115359823	-	Bamb_5078	-	aminoglycoside phosphotransferase
1854	 65.90	0	2102268..2103050	+	260	115359824	-	Bamb_5079	-	short chain dehydrogenase
1855	 69.70	0	2103058..2103816	+	252	115359825	-	Bamb_5080	-	short-chain dehydrogenase/reductase SDR
1856	 67.55	0	2103850..2105094	+	414	115359826	-	Bamb_5081	-	acyl-CoA dehydrogenase domain-containing protein
1857	 66.34	0	2105458..2106363	+	301	115359827	-	Bamb_5082	-	LysR family transcriptional regulator
1858	 63.90	0	2106401..2107519	-	372	115359828	-	Bamb_5083	-	heat shock protein DnaJ domain-containing protein
1859	 67.09	0	2107782..2110148	-	788	115359829	-	Bamb_5084	-	DNA polymerase II
1860	 66.92	0	2110236..2111828	-	530	115359830	-	Bamb_5085	-	PAS/PAC sensor hybrid histidine kinase
1861	 66.06	0	2112002..2113642	-	546	115359831	-	Bamb_5086	-	diguanylate phosphodiesterase
1862	 66.00	0	2114098..2114397	-	99	115359832	-	Bamb_5087	-	hypothetical protein
1863	 65.73	0	2114456..2114989	+	177	115359833	-	Bamb_5088	-	alginate regulatory protein AlgR3
1864	 66.61	0	2114994..2116616	-	540	115359834	-	Bamb_5089	-	histidine acid phosphatase
1865	 65.52	0	2116802..2117236	-	144	115359835	-	Bamb_5090	-	hypothetical protein
1866	 70.57	0	2117553..2118911	-	452	115359836	-	Bamb_5091	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1867	 67.09	0	2119012..2119965	+	317	115359837	-	Bamb_5092	-	LysR family transcriptional regulator
1868	 70.20	0	2120395..2121300	+	301	115359838	-	Bamb_5093	-	AraC family transcriptional regulator
1869	 68.47	0	2121584..2122471	+	295	115359839	-	Bamb_5094	-	NmrA family protein
1870	 67.50	0	2122506..2123708	-	400	115359840	-	Bamb_5095	-	benzoate transporter
1871	 67.64	0	2123933..2124958	-	341	115359841	-	Bamb_5096	-	fatty acid desaturase
1872	 69.21	0	2125265..2126089	+	274	115359842	-	Bamb_5097	-	ABC phosphate/phosphonate transporter, periplasmic ligand binding protein
1873	 67.88	0	2126130..2127527	-	465	115359843	-	Bamb_5098	-	ATP-dependent RNA helicase DbpA
1874	 68.28	0	2127524..2127832	-	102	115359844	-	Bamb_5099	-	hypothetical protein
1875	 65.06	0	2128198..2129880	-	560	162389968	-	Bamb_5100	-	malate:quinone oxidoreductase
1876	 63.33	0	2130027..2130326	-	99	115359846	-	Bamb_5101	-	hypothetical protein
1877	 65.69	0	2130367..2130672	-	101	115359847	-	Bamb_5102	-	hypothetical protein
1878	 64.62	0	2130741..2131229	-	162	115359848	-	Bamb_5103	-	AsnC family transcriptional regulator
1879	 71.10	+1	2131355..2132392	+	345	115359849	-	Bamb_5104	-	histone deacetylase superfamily protein
1880	 67.80	0	2132462..2133607	+	381	115359850	-	Bamb_5105	-	extracellular ligand-binding receptor
1881	 67.12	0	2133657..2134535	-	292	115359851	-	Bamb_5106	-	MscS mechanosensitive ion channel
1882	 72.54	+1	2135200..2136237	+	345	115359852	-	Bamb_5107	-	peptidase M23B
1883	 63.69	0	2136350..2137087	-	245	115359853	-	Bamb_5108	-	fucose-binding lectin II
1884	 62.06	-1	2138008..2138289	+	93	115359854	-	Bamb_5109	-	hypothetical protein
1885	 62.41	-1	2138357..2139790	-	477	115359855	-	Bamb_5110	-	hypothetical protein
1886	 67.47	0	2139787..2141154	-	455	115359856	-	Bamb_5111	-	hypothetical protein
1887	 66.82	0	2141151..2142443	-	430	115359857	-	Bamb_5112	-	hypothetical protein
1888	 66.84	0	2142431..2143579	-	382	115359858	-	Bamb_5113	-	glycosyl transferase, group 1
1889	 67.12	0	2143569..2144663	-	364	115359859	-	Bamb_5114	-	hypothetical protein
1890	 65.35	0	2144650..2145711	-	353	115359860	-	Bamb_5115	-	glycosyl transferase, group 1
1891	 66.05	0	2145708..2147975	-	755	115359861	-	Bamb_5116	-	exopolysaccharide transport protein family
1892	 64.61	0	2147986..2148423	-	145	115359862	-	Bamb_5117	-	protein tyrosine phosphatase
1893	 70.77	0	2148471..2149517	-	348	115359863	-	Bamb_5118	-	polysaccharide export protein
1894	 66.45	0	2149719..2151125	-	468	115359864	-	Bamb_5119	-	sugar transferase
1895	 70.00	0	2151773..2152582	-	269	115359865	-	Bamb_5120	-	redoxin domain-containing protein
1896	 60.24	-1	2152871..2153461	-	196	115359866	-	Bamb_5121	-	hypothetical protein
1897	 60.73	-1	2153554..2154615	+	353	115359867	-	Bamb_5122	-	IS605 family transposase OrfB
1898	 69.65	0	2154860..2155864	-	334	115359868	-	Bamb_5123	-	hypothetical protein
1899	 69.97	0	2156170..2156895	+	241	115359869	-	Bamb_5124	-	methyltransferase type 11
1900	 64.57	0	2156927..2157403	-	158	115359870	-	Bamb_5125	-	GCN5-related N-acetyltransferase
1901	 72.89	+1	2157535..2159013	+	492	115359871	-	Bamb_5126	-	GntR family transcriptional regulator
1902	 69.08	0	2159068..2160105	-	345	115359872	-	Bamb_5127	-	aldo/keto reductase
1903	 73.65	+1	2160235..2161122	+	295	115359873	-	Bamb_5128	-	LysR family transcriptional regulator
1904	 65.33	0	2161310..2161609	+	99	115359874	-	Bamb_5129	-	ArsR family transcriptional regulator
1905	 71.32	+1	2161630..2162982	+	450	115359875	-	Bamb_5130	-	pyridoxal-dependent decarboxylase
1906	 61.54	-1	2163215..2163682	+	155	115359876	-	Bamb_5131	-	cupin 2 domain-containing protein
1907	 70.80	0	2163752..2164573	+	273	115359877	-	Bamb_5132	-	short-chain dehydrogenase/reductase SDR
1908	 68.37	0	2164679..2165500	-	273	115359878	-	Bamb_5133	-	stationary-phase survival protein SurE
1909	 68.32	0	2165646..2165948	-	100	115359879	-	Bamb_5134	-	branched-chain amino acid transport
1910	 68.70	0	2165938..2166675	-	245	115359880	-	Bamb_5135	-	AzlC family protein
1911	 62.36	-1	2166725..2167258	+	177	115359881	-	Bamb_5136	-	AsnC family transcriptional regulator
1912	 64.72	0	2167377..2168045	+	222	115359882	-	Bamb_5137	-	hypothetical protein
1913	 68.60	0	2168195..2168920	+	241	115359883	-	Bamb_5138	-	hypothetical protein
1914	 63.89	0	2169003..2169290	-	95	115359884	-	Bamb_5139	-	XRE family transcriptional regulator
1915	 69.67	0	2169446..2170078	-	210	115359885	-	Bamb_5140	-	lysine exporter protein LysE/YggA
1916	 70.14	0	2170280..2171143	-	287	115359886	-	Bamb_5141	-	hypothetical protein
1917	 64.56	0	2171150..2171482	-	110	115359887	-	Bamb_5142	-	hypothetical protein
1918	 68.81	0	2171700..2172026	+	108	115359888	-	Bamb_5143	-	hypothetical protein
1919	 65.00	0	2172037..2172456	+	139	115359889	-	Bamb_5144	-	hypothetical protein
1920	 66.67	0	2172511..2174322	-	603	115359890	-	Bamb_5145	-	periplasmic sensor hybrid histidine kinase
1921	 64.87	0	2174332..2174832	-	166	115359891	-	Bamb_5146	-	oxidoreductase, molybdopterin binding
1922	 66.44	0	2174894..2175787	-	297	115359892	-	Bamb_5147	-	response regulator receiver protein
1923	 61.90	-1	2176144..2176731	+	195	115359893	-	Bamb_5148	-	Sel1 domain-containing protein
1924	 69.32	0	2176854..2177681	+	275	115359894	-	Bamb_5149	-	hypothetical protein
1925	 65.98	0	2177802..2178818	+	338	115359895	-	Bamb_5150	-	hypothetical protein
1926	 69.53	0	2179199..2182267	+	1022	115359896	-	Bamb_5151	-	periplasmic sensor hybrid histidine kinase
1927	 61.52	-1	2182919..2183578	+	219	115359897	-	Bamb_5152	-	two component LuxR family transcriptional regulator
1928	 67.43	0	2183660..2186668	+	1002	115359898	-	Bamb_5153	-	multi-sensor hybrid histidine kinase
1929	 70.18	0	2186674..2186901	+	75	115359899	-	Bamb_5154	-	hypothetical protein
1930	 66.27	0	2187021..2188037	-	338	115359900	-	Bamb_5155	-	1-aminocyclopropane-1-carboxylate deaminase
1931	 64.27	0	2188235..2188735	+	166	115359901	-	Bamb_5156	-	AsnC family transcriptional regulator
1932	 67.89	0	2189002..2190723	+	573	115359902	-	Bamb_5157	-	pyruvate dehydrogenase
1933	 67.97	0	2190720..2191025	+	101	115359903	-	Bamb_5158	-	hypothetical protein
1934	 70.39	0	2191181..2191771	+	196	115359904	-	Bamb_5159	-	methyltransferase type 11
1935	 66.67	0	2191829..2192965	-	378	115359905	-	Bamb_5160	-	acyltransferase 3
1936	 70.19	0	2193420..2193986	+	188	115359906	-	Bamb_5161	-	hypothetical protein
1937	 67.01	0	2194017..2194892	-	291	115359907	-	Bamb_5162	-	LysR family transcriptional regulator
1938	 67.80	0	2195056..2196381	+	441	115359908	-	Bamb_5163	-	uncharacterized membrane-anchored protein
1939	 59.20	-1	2196412..2196612	+	66	115359909	-	Bamb_5164	-	hypothetical protein
1940	 54.78	-2	2196658..2197128	-	156	115359910	-	Bamb_5165	-	hypothetical protein
1941	 53.91	-2	2197146..2197631	-	161	115359911	-	Bamb_5166	-	hypothetical protein
1942	 67.13	0	2198142..2198576	+	144	115359912	-	Bamb_5167	-	GCN5-related N-acetyltransferase
1943	 67.11	0	2198592..2199488	-	298	115359913	-	Bamb_5168	-	LysR family transcriptional regulator
1944	 68.19	0	2199611..2200399	+	262	115359914	-	Bamb_5169	-	trans-aconitate 2-methyltransferase
1945	 69.54	0	2200442..2201032	-	196	115359915	-	Bamb_5170	-	GCN5-related N-acetyltransferase
1946	 65.93	0	2201569..2201973	+	134	115359916	-	Bamb_5171	-	hypothetical protein
1947	 67.62	0	2202212..2203048	-	278	115359917	-	Bamb_5172	-	LuxR family transcriptional regulator
1948	 65.68	0	2203132..2203536	-	134	115359918	-	Bamb_5173	-	hypothetical protein
1949	 68.79	0	2203533..2204942	-	469	115359919	-	Bamb_5174	-	major facilitator transporter
1950	 67.60	0	2205137..2205997	-	286	115359920	-	Bamb_5175	-	hypothetical protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.