IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1785	 68.61	0	2030770..2031180	-	136	115359755	-	Bamb_5010	-	hypothetical protein
1786	 64.53	0	2031459..2031692	+	77	115359756	-	Bamb_5011	-	hypothetical protein
1787	 67.43	0	2031836..2032756	+	306	115359757	-	Bamb_5012	-	Serine O-acetyltransferase
1788	 68.66	0	2032789..2033592	-	267	115359758	-	Bamb_5013	-	short-chain dehydrogenase/reductase SDR
1789	 64.29	0	2033592..2034221	-	209	115359759	folE	Bamb_5014	-	GTP cyclohydrolase I
1790	 69.47	0	2034323..2035249	-	308	115359760	-	Bamb_5015	-	LysR family transcriptional regulator
1791	 67.40	0	2035366..2036598	+	410	115359761	-	Bamb_5016	-	4-hydroxybenzoate 3-monooxygenase
1792	 66.67	0	2036743..2037459	+	238	115359762	-	Bamb_5017	-	3-oxoacid CoA-transferase, A subunit
1793	 65.60	0	2037479..2038135	+	218	115359763	-	Bamb_5018	-	3-oxoacid CoA-transferase, B subunit
1794	 72.23	+1	2038224..2039606	+	460	115359764	-	Bamb_5019	-	3-carboxy-cis,cis-muconate cycloisomerase
1795	 69.08	0	2039606..2040391	+	261	115359765	-	Bamb_5020	-	3-oxoadipate enol-lactonase
1796	 65.12	0	2040402..2040788	+	128	115359766	-	Bamb_5021	-	4-carboxymuconolactone decarboxylase
1797	 66.67	0	2040986..2042344	+	452	115359767	-	Bamb_5022	-	major facilitator transporter
1798	 63.33	0	2042468..2042707	-	79	115359768	-	Bamb_5023	-	hypothetical protein
1799	 65.53	0	2042824..2043441	-	205	115359769	-	Bamb_5024	-	lysine exporter protein LysE/YggA
1800	 60.67	-1	2043586..2044119	-	177	115359770	-	Bamb_5025	-	endoribonuclease L-PSP
1801	 65.29	0	2044116..2045348	-	410	115359771	-	Bamb_5026	-	acyl-CoA dehydrogenase type 2
1802	 59.84	-1	2045348..2046358	-	336	115359772	-	Bamb_5027	-	hypothetical protein
1803	 63.12	0	2046382..2047905	-	507	115359773	-	Bamb_5028	-	AMP-dependent synthetase and ligase
1804	 61.83	-1	2047895..2049115	-	406	115359774	-	Bamb_5029	-	major facilitator transporter
1805	 58.66	-2	2049223..2049609	-	128	115359775	ectC	Bamb_5030	-	L-ectoine synthase
1806	 64.14	0	2050214..2051122	-	302	115359776	-	Bamb_5031	-	LysR family transcriptional regulator
1807	 66.67	0	2051244..2051957	+	237	115359777	-	Bamb_5032	-	ThiJ/PfpI domain-containing protein
1808	 62.16	-1	2051979..2052821	+	280	115359778	-	Bamb_5033	-	ThiJ/PfpI domain-containing protein
1809	 63.02	0	2052879..2053673	+	264	115359779	-	Bamb_5034	-	short-chain dehydrogenase/reductase SDR
1810	 60.14	-1	2053688..2053978	+	96	115359780	-	Bamb_5035	-	antibiotic biosynthesis monooxygenase
1811	 62.68	-1	2054009..2055211	+	400	115359781	-	Bamb_5036	-	hypothetical protein
1812	 47.09	-2	2055658..2056224	+	188	115359782	-	Bamb_5037	-	acetyltransferase, including N-acetylases of ribosomal protein
1813	 56.59	-2	2056754..2057140	+	128	115359783	-	Bamb_5038	-	hypothetical protein
1814	 58.81	-2	2057528..2058736	+	402	115359784	-	Bamb_5039	-	tRNA synthetase, class II (G, H, P and S)
1815	 57.83	-2	2058930..2059619	+	229	115359785	-	Bamb_5040	-	LuxR family transcriptional regulator
1816	 58.61	-2	2059897..2060616	+	239	115359786	-	Bamb_5041	-	hypothetical protein
1817	 60.22	-1	2060613..2061542	+	309	115359787	-	Bamb_5042	-	fatty acid desaturase
1818	 61.14	-1	2061535..2062908	+	457	115359788	-	Bamb_5043	-	hypothetical protein
1819	 61.72	-1	2062913..2064124	+	403	115359789	-	Bamb_5044	-	major facilitator transporter
1820	 61.47	-1	2064121..2065275	+	384	115359790	-	Bamb_5045	-	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes
1821	 54.13	-2	2065325..2065699	+	124	115359791	-	Bamb_5046	-	glutathione-dependent formaldehyde-activating, GFA
1822	 60.93	-1	2065710..2066615	+	301	115359792	-	Bamb_5047	-	peptidase C26
1823	 58.33	-2	2067874..2068425	+	183	115359793	-	Bamb_5048	-	hypothetical protein
1824	 62.22	-1	2068457..2068771	+	104	115359794	-	Bamb_5049	-	blue (type1) copper domain-containing protein
1825	 65.67	0	2068768..2069472	+	234	115359795	-	Bamb_5050	-	RNA polymerase sigma factor
1826	 65.38	0	2069496..2070275	-	259	115359796	-	Bamb_5051	-	PGAP1 family protein
1827	 67.01	0	2070272..2071426	-	384	115359797	-	Bamb_5052	-	hypothetical protein
1828	 65.99	0	2071616..2072794	-	392	115359798	-	Bamb_5053	-	chromate transporter
1829	 67.08	0	2072791..2073768	-	325	115359799	-	Bamb_5054	-	chromate resistance exported protein
1830	 59.34	-1	2073943..2074215	+	90	115359800	-	Bamb_5055	-	hypothetical protein
1831	 65.89	0	2074227..2075507	+	426	115359801	-	Bamb_5056	-	cation diffusion facilitator family transporter
1832	 66.67	0	2075510..2075848	+	112	115359802	-	Bamb_5057	-	hypothetical protein
1833	 64.34	0	2075820..2077967	-	715	115359803	-	Bamb_5058	-	TonB-dependent siderophore receptor
1834	 68.41	0	2078279..2079484	+	401	115359804	-	Bamb_5059	-	major facilitator transporter
1835	 65.82	0	2079817..2081121	+	434	115359805	-	Bamb_5060	-	sodium:dicarboxylate symporter
1836	 60.40	-1	2081408..2082460	-	350	115359806	-	Bamb_5061	-	IS605 family transposase OrfB
1837	 67.08	0	2082609..2084543	+	644	115359807	-	Bamb_5062	-	hypothetical protein
1838	 67.29	0	2084814..2087699	+	961	115359808	-	Bamb_5063	-	putative lipoprotein
1839	 64.00	0	2087787..2088236	-	149	115359809	-	Bamb_5064	-	GCN5-related N-acetyltransferase
1840	 64.05	0	2088302..2089258	-	318	115359810	-	Bamb_5065	-	hypothetical protein
1841	 70.38	0	2089461..2090483	-	340	115359811	-	Bamb_5066	-	MerR family transcriptional regulator
1842	 72.40	+1	2090556..2091497	-	313	115359812	-	Bamb_5067	-	amidohydrolase 2
1843	 66.35	0	2091475..2092422	-	315	115359813	-	Bamb_5068	-	hypothetical protein
1844	 67.67	0	2092469..2093761	-	430	115359814	-	Bamb_5069	-	major facilitator transporter
1845	 70.15	0	2093857..2094774	-	305	115359815	-	Bamb_5070	-	dihydrodipicolinate synthetase
1846	 63.26	0	2094783..2095955	-	390	115359816	-	Bamb_5071	-	mandelate racemase/muconate lactonizing protein
1847	 72.21	+1	2096006..2097052	-	348	115359817	pdxA	Bamb_5072	-	4-hydroxythreonine-4-phosphate dehydrogenase
1848	 70.03	0	2097208..2098158	+	316	115359818	-	Bamb_5073	-	LysR family transcriptional regulator
1849	 71.14	+1	2098225..2098470	-	81	115359819	-	Bamb_5074	-	hypothetical protein
1850	 68.99	0	2098451..2099743	-	430	115359820	-	Bamb_5075	-	major facilitator transporter
1851	 56.30	-2	2100148..2100417	-	89	115359821	-	Bamb_5076	-	hypothetical protein
1852	 68.35	0	2100474..2101184	+	236	115359822	-	Bamb_5077	-	phosphoglycerate mutase
1853	 68.34	0	2101162..2102235	+	357	115359823	-	Bamb_5078	-	aminoglycoside phosphotransferase
1854	 65.90	0	2102268..2103050	+	260	115359824	-	Bamb_5079	-	short chain dehydrogenase
1855	 69.70	0	2103058..2103816	+	252	115359825	-	Bamb_5080	-	short-chain dehydrogenase/reductase SDR
1856	 67.55	0	2103850..2105094	+	414	115359826	-	Bamb_5081	-	acyl-CoA dehydrogenase domain-containing protein
1857	 66.34	0	2105458..2106363	+	301	115359827	-	Bamb_5082	-	LysR family transcriptional regulator
1858	 63.90	0	2106401..2107519	-	372	115359828	-	Bamb_5083	-	heat shock protein DnaJ domain-containing protein
1859	 67.09	0	2107782..2110148	-	788	115359829	-	Bamb_5084	-	DNA polymerase II
1860	 66.92	0	2110236..2111828	-	530	115359830	-	Bamb_5085	-	PAS/PAC sensor hybrid histidine kinase
1861	 66.06	0	2112002..2113642	-	546	115359831	-	Bamb_5086	-	diguanylate phosphodiesterase
1862	 66.00	0	2114098..2114397	-	99	115359832	-	Bamb_5087	-	hypothetical protein
1863	 65.73	0	2114456..2114989	+	177	115359833	-	Bamb_5088	-	alginate regulatory protein AlgR3
1864	 66.61	0	2114994..2116616	-	540	115359834	-	Bamb_5089	-	histidine acid phosphatase
1865	 65.52	0	2116802..2117236	-	144	115359835	-	Bamb_5090	-	hypothetical protein
1866	 70.57	0	2117553..2118911	-	452	115359836	-	Bamb_5091	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1867	 67.09	0	2119012..2119965	+	317	115359837	-	Bamb_5092	-	LysR family transcriptional regulator
1868	 70.20	0	2120395..2121300	+	301	115359838	-	Bamb_5093	-	AraC family transcriptional regulator
1869	 68.47	0	2121584..2122471	+	295	115359839	-	Bamb_5094	-	NmrA family protein
1870	 67.50	0	2122506..2123708	-	400	115359840	-	Bamb_5095	-	benzoate transporter
1871	 67.64	0	2123933..2124958	-	341	115359841	-	Bamb_5096	-	fatty acid desaturase
1872	 69.21	0	2125265..2126089	+	274	115359842	-	Bamb_5097	-	ABC phosphate/phosphonate transporter, periplasmic ligand binding protein
1873	 67.88	0	2126130..2127527	-	465	115359843	-	Bamb_5098	-	ATP-dependent RNA helicase DbpA
1874	 68.28	0	2127524..2127832	-	102	115359844	-	Bamb_5099	-	hypothetical protein
1875	 65.06	0	2128198..2129880	-	560	162389968	-	Bamb_5100	-	malate:quinone oxidoreductase
1876	 63.33	0	2130027..2130326	-	99	115359846	-	Bamb_5101	-	hypothetical protein
1877	 65.69	0	2130367..2130672	-	101	115359847	-	Bamb_5102	-	hypothetical protein
1878	 64.62	0	2130741..2131229	-	162	115359848	-	Bamb_5103	-	AsnC family transcriptional regulator
1879	 71.10	+1	2131355..2132392	+	345	115359849	-	Bamb_5104	-	histone deacetylase superfamily protein
1880	 67.80	0	2132462..2133607	+	381	115359850	-	Bamb_5105	-	extracellular ligand-binding receptor
1881	 67.12	0	2133657..2134535	-	292	115359851	-	Bamb_5106	-	MscS mechanosensitive ion channel
1882	 72.54	+1	2135200..2136237	+	345	115359852	-	Bamb_5107	-	peptidase M23B
1883	 63.69	0	2136350..2137087	-	245	115359853	-	Bamb_5108	-	fucose-binding lectin II
1884	 62.06	-1	2138008..2138289	+	93	115359854	-	Bamb_5109	-	hypothetical protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.