IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1714	 73.59	+1	1951606..1952688	+	360	115359684	glcE	Bamb_4939	-	glycolate oxidase FAD binding subunit
1715	 71.42	+1	1952713..1953933	+	406	115359685	glcF	Bamb_4940	-	glycolate oxidase iron-sulfur subunit
1716	 69.63	0	1953956..1954360	+	134	115359686	-	Bamb_4941	-	hypothetical protein
1717	 68.41	0	1954397..1956571	+	724	115359687	-	Bamb_4942	-	malate synthase G
1718	 62.32	-1	1956650..1956994	-	114	115359688	-	Bamb_4943	-	hypothetical protein
1719	 67.75	0	1957058..1958620	+	520	115359689	-	Bamb_4944	-	diguanylate cyclase
1720	 69.42	0	1958754..1960133	+	459	115359690	-	Bamb_4945	-	periplasmic sensor signal transduction histidine kinase
1721	 69.15	0	1960165..1960809	+	214	115359691	-	Bamb_4946	-	two component LuxR family transcriptional regulator
1722	 64.06	0	1960920..1961570	-	216	115359692	-	Bamb_4947	-	toluene tolerance family protein
1723	 69.63	0	1961847..1964480	+	877	115359693	-	Bamb_4948	-	RND efflux transporter
1724	 69.45	0	1964473..1965477	+	334	115359694	-	Bamb_4949	-	VacJ family lipoprotein
1725	 76.27	+2	1965589..1966296	-	235	115359695	-	Bamb_4950	-	hypothetical protein
1726	 68.24	0	1966300..1968273	-	657	115359696	-	Bamb_4951	-	squalene-hopene cyclase
1727	 73.44	+1	1968289..1969542	-	417	115359697	-	Bamb_4952	-	amine oxidase
1728	 69.49	0	1969547..1970395	-	282	115359698	-	Bamb_4953	-	squalene/phytoene synthase
1729	 69.07	0	1970656..1970988	-	110	115359699	-	Bamb_4954	-	hypothetical protein
1730	 69.83	0	1971207..1972091	+	294	115359700	-	Bamb_4955	-	esterase
1731	 68.10	0	1972136..1973110	-	324	115359701	-	Bamb_4956	-	diguanylate cyclase with PAS/PAC sensor
1732	 66.04	0	1973107..1973742	-	211	115359702	-	Bamb_4957	-	CheC, inhibitor of MCP methylation
1733	 59.08	-1	1973726..1974094	-	122	115359703	-	Bamb_4958	-	response regulator receiver protein
1734	 67.96	0	1974561..1976801	+	746	115359704	-	Bamb_4959	-	periplasmic sensor hybrid histidine kinase
1735	 65.95	0	1976847..1977401	-	184	115359705	-	Bamb_4960	-	NADPH-dependent FMN reductase
1736	 64.32	0	1977767..1978363	+	198	115359706	-	Bamb_4961	-	RNA polymerase sigma factor
1737	 70.18	0	1978344..1978571	+	75	115359707	-	Bamb_4962	-	hypothetical protein
1738	 74.80	+1	1978605..1978973	+	122	115359708	-	Bamb_4963	-	hypothetical protein
1739	 63.89	0	1979067..1979426	-	119	115359709	-	Bamb_4964	-	arsenate reductase
1740	 60.94	-1	1980429..1981091	+	220	115359710	-	Bamb_4965	-	cobyrinic acid a,c-diamide synthase
1741	 63.09	0	1981115..1982176	+	353	115359711	-	Bamb_4966	-	parB-like partition proteins
1742	 64.41	0	1982267..1983730	-	487	115359712	-	Bamb_4967	-	hypothetical protein
1743	 64.04	0	1985444..1986625	+	393	115359713	-	Bamb_4968	-	hypothetical protein
1744	 65.09	0	1986766..1987779	-	337	115359714	-	Bamb_4969	-	phage integrase family protein
1745	 65.08	0	1987882..1988259	-	125	115359715	-	Bamb_4970	-	hypothetical protein
1746	 69.93	0	1988387..1988998	-	203	115359716	-	Bamb_4971	-	XRE family transcriptional regulator
1747	 67.33	0	1989160..1990359	+	399	115359717	-	Bamb_4972	-	2-amino-3-ketobutyrate coenzyme A ligase
1748	 63.75	0	1990373..1991401	+	342	115359718	tdh	Bamb_4973	-	L-threonine 3-dehydrogenase
1749	 66.83	0	1992128..1992742	+	204	115359719	-	Bamb_4974	-	TetR family transcriptional regulator
1750	 64.58	0	1992798..1993277	+	159	115359720	-	Bamb_4975	-	hypothetical protein
1751	 67.31	0	1993776..1994861	-	361	115359721	-	Bamb_4976	-	tartrate dehydrogenase
1752	 69.37	0	1994979..1995902	+	307	115359722	-	Bamb_4977	-	LysR family transcriptional regulator
1753	 68.25	0	1996062..1997009	-	315	115359723	-	Bamb_4978	-	N-acetyl-gamma-glutamyl-phosphate reductase
1754	 71.07	+1	1997129..1998013	+	294	115359724	-	Bamb_4979	-	LysR family transcriptional regulator
1755	 67.74	0	1998182..1998646	-	154	115359725	-	Bamb_4980	-	hypothetical protein
1756	 66.67	0	1998707..1999924	-	405	115359726	-	Bamb_4981	-	patatin
1757	 64.38	0	2000055..2000840	-	261	115359727	-	Bamb_4982	-	3-hydroxybutyrate dehydrogenase
1758	 62.75	-1	2000892..2001632	-	246	115359728	-	Bamb_4983	-	acetoacetate decarboxylase
1759	 69.59	0	2002079..2002660	+	193	115359729	-	Bamb_4984	-	phosphoesterase, PA-phosphatase related
1760	 62.67	-1	2002699..2002923	-	74	115359730	-	Bamb_4985	-	hypothetical protein
1761	 70.19	0	2003043..2003864	-	273	115359731	-	Bamb_4986	-	FAD-binding 9, siderophore-interacting domain-containing protein
1762	 69.61	0	2003902..2004615	-	237	115359732	-	Bamb_4987	-	PadR-like family transcriptional regulator
1763	 69.76	0	2005426..2006427	+	333	115359733	-	Bamb_4988	-	FHA domain-containing protein
1764	 71.19	+1	2006424..2010470	+	1348	115359734	-	Bamb_4989	-	serine/threonine protein kinase
1765	 58.84	-1	2010504..2010848	+	114	115359735	-	Bamb_4990	-	hypothetical protein
1766	 60.61	-1	2010865..2011227	+	120	115359736	-	Bamb_4991	-	hypothetical protein
1767	 68.72	0	2011322..2013559	+	745	115359737	-	Bamb_4992	-	hypothetical protein
1768	 59.38	-1	2013686..2014261	-	191	115359738	-	Bamb_4993	-	hypothetical protein
1769	 63.64	0	2014542..2014673	+	43	115359739	-	Bamb_4994	-	betaine-aldehyde dehydrogenase
1770	 65.19	0	2014860..2015810	-	316	115359740	-	Bamb_4995	-	AraC family transcriptional regulator
1771	 63.16	0	2015912..2016139	-	75	115359741	-	Bamb_4996	-	hypothetical protein
1772	 67.73	0	2016196..2017794	+	532	115359742	-	Bamb_4997	-	glucose-methanol-choline oxidoreductase
1773	 66.06	0	2017836..2019323	+	495	115359743	-	Bamb_4998	-	aldehyde dehydrogenase
1774	 66.76	0	2019393..2020484	-	363	115359744	-	Bamb_4999	-	outer membrane protein (porin)
1775	 71.32	+1	2020696..2021340	-	214	115359745	-	Bamb_5000	-	dehydrogenases with different specificities-like protein
1776	 71.39	+1	2021395..2022516	-	373	115359746	-	Bamb_5001	-	alcohol dehydrogenase
1777	 69.12	0	2022518..2023819	-	433	115359747	-	Bamb_5002	-	major facilitator transporter
1778	 61.05	-1	2023838..2024371	-	177	115359748	-	Bamb_5003	-	cupin 2 domain-containing protein
1779	 69.05	0	2024559..2025524	+	321	115359749	-	Bamb_5004	-	AraC family transcriptional regulator
1780	 66.88	0	2025787..2026734	-	315	115359750	-	Bamb_5005	-	aldo/keto reductase
1781	 67.31	0	2027109..2027729	-	206	115359751	-	Bamb_5006	-	lysine exporter protein LysE/YggA
1782	 68.90	0	2027836..2028729	+	297	115359752	-	Bamb_5007	-	chromosome replication initiation inhibitor protein
1783	 67.33	0	2028799..2029548	-	249	115359753	-	Bamb_5008	-	Crp/FNR family transcriptional regulator
1784	 67.30	0	2029696..2030166	-	156	115359754	-	Bamb_5009	-	UspA domain-containing protein
1785	 68.61	0	2030770..2031180	-	136	115359755	-	Bamb_5010	-	hypothetical protein
1786	 64.53	0	2031459..2031692	+	77	115359756	-	Bamb_5011	-	hypothetical protein
1787	 67.43	0	2031836..2032756	+	306	115359757	-	Bamb_5012	-	Serine O-acetyltransferase
1788	 68.66	0	2032789..2033592	-	267	115359758	-	Bamb_5013	-	short-chain dehydrogenase/reductase SDR
1789	 64.29	0	2033592..2034221	-	209	115359759	folE	Bamb_5014	-	GTP cyclohydrolase I
1790	 69.47	0	2034323..2035249	-	308	115359760	-	Bamb_5015	-	LysR family transcriptional regulator
1791	 67.40	0	2035366..2036598	+	410	115359761	-	Bamb_5016	-	4-hydroxybenzoate 3-monooxygenase
1792	 66.67	0	2036743..2037459	+	238	115359762	-	Bamb_5017	-	3-oxoacid CoA-transferase, A subunit
1793	 65.60	0	2037479..2038135	+	218	115359763	-	Bamb_5018	-	3-oxoacid CoA-transferase, B subunit
1794	 72.23	+1	2038224..2039606	+	460	115359764	-	Bamb_5019	-	3-carboxy-cis,cis-muconate cycloisomerase
1795	 69.08	0	2039606..2040391	+	261	115359765	-	Bamb_5020	-	3-oxoadipate enol-lactonase
1796	 65.12	0	2040402..2040788	+	128	115359766	-	Bamb_5021	-	4-carboxymuconolactone decarboxylase
1797	 66.67	0	2040986..2042344	+	452	115359767	-	Bamb_5022	-	major facilitator transporter
1798	 63.33	0	2042468..2042707	-	79	115359768	-	Bamb_5023	-	hypothetical protein
1799	 65.53	0	2042824..2043441	-	205	115359769	-	Bamb_5024	-	lysine exporter protein LysE/YggA
1800	 60.67	-1	2043586..2044119	-	177	115359770	-	Bamb_5025	-	endoribonuclease L-PSP
1801	 65.29	0	2044116..2045348	-	410	115359771	-	Bamb_5026	-	acyl-CoA dehydrogenase type 2
1802	 59.84	-1	2045348..2046358	-	336	115359772	-	Bamb_5027	-	hypothetical protein
1803	 63.12	0	2046382..2047905	-	507	115359773	-	Bamb_5028	-	AMP-dependent synthetase and ligase
1804	 61.83	-1	2047895..2049115	-	406	115359774	-	Bamb_5029	-	major facilitator transporter
1805	 58.66	-2	2049223..2049609	-	128	115359775	ectC	Bamb_5030	-	L-ectoine synthase
1806	 64.14	0	2050214..2051122	-	302	115359776	-	Bamb_5031	-	LysR family transcriptional regulator
1807	 66.67	0	2051244..2051957	+	237	115359777	-	Bamb_5032	-	ThiJ/PfpI domain-containing protein
1808	 62.16	-1	2051979..2052821	+	280	115359778	-	Bamb_5033	-	ThiJ/PfpI domain-containing protein
1809	 63.02	0	2052879..2053673	+	264	115359779	-	Bamb_5034	-	short-chain dehydrogenase/reductase SDR
1810	 60.14	-1	2053688..2053978	+	96	115359780	-	Bamb_5035	-	antibiotic biosynthesis monooxygenase
1811	 62.68	-1	2054009..2055211	+	400	115359781	-	Bamb_5036	-	hypothetical protein
1812	 47.09	-2	2055658..2056224	+	188	115359782	-	Bamb_5037	-	acetyltransferase, including N-acetylases of ribosomal protein
1813	 56.59	-2	2056754..2057140	+	128	115359783	-	Bamb_5038	-	hypothetical protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.