IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1686	 69.16	0	1914819..1916540	-	573	115359656	-	Bamb_4911	-	feruloyl esterase
1687	 71.98	+1	1916569..1917717	-	382	115359657	-	Bamb_4912	-	porin
1688	 72.14	+1	1917781..1918986	-	401	115359658	-	Bamb_4913	-	putative 3-hydroxyphenylpropionic transporter MhpT
1689	 70.55	0	1919207..1921114	-	635	115359659	-	Bamb_4914	-	feruloyl-CoA synthase
1690	 71.70	+1	1921111..1922559	-	482	115359660	-	Bamb_4915	-	aldehyde dehydrogenase
1691	 66.06	0	1922607..1923437	-	276	115359661	-	Bamb_4916	-	p-hydroxycinnamoyl CoA hydratase/lyase
1692	 70.63	0	1923662..1924165	-	167	115359662	-	Bamb_4917	-	MarR family transcriptional regulator
1693	 70.67	0	1924338..1925237	-	299	115359663	-	Bamb_4918	-	SMP-30/gluconolaconase/LRE domain-containing protein
1694	 66.08	0	1925283..1926302	-	339	115359664	araH	Bamb_4919	-	L-arabinose transporter permease protein
1695	 70.45	0	1926338..1927897	-	519	115359665	araG	Bamb_4920	-	L-arabinose transporter ATP-binding protein
1696	 68.06	0	1927918..1928922	-	334	115359666	-	Bamb_4921	-	periplasmic binding protein/LacI transcriptional regulator
1697	 71.51	+1	1929004..1929933	-	309	115359667	-	Bamb_4922	-	galactose 1-dehydrogenase
1698	 68.71	0	1929958..1930887	-	309	115359668	-	Bamb_4923	-	dihydrodipicolinate synthetase
1699	 69.83	0	1930940..1932298	-	452	115359669	-	Bamb_4924	-	major facilitator transporter
1700	 68.66	0	1932532..1934283	-	583	115359670	-	Bamb_4925	-	dihydroxy-acid dehydratase
1701	 71.08	+1	1934398..1935348	+	316	115359671	-	Bamb_4926	-	LysR family transcriptional regulator
1702	 65.41	0	1935351..1935827	-	158	115359672	-	Bamb_4927	-	OsmC family protein
1703	 68.61	0	1936235..1938340	+	701	115359673	-	Bamb_4928	-	TonB-dependent siderophore receptor
1704	 71.28	+1	1938456..1939496	-	346	115359674	-	Bamb_4929	-	LacI family transcription regulator
1705	 71.02	0	1939687..1940835	+	382	115359675	-	Bamb_4930	-	ABC transporter related
1706	 70.43	0	1940844..1942835	+	663	115359676	-	Bamb_4931	-	Beta-galactosidase
1707	 65.71	0	1942903..1944162	+	419	115359677	-	Bamb_4932	-	extracellular solute-binding protein
1708	 66.46	0	1944223..1945167	+	314	115359678	-	Bamb_4933	-	binding-protein-dependent transport systems inner membrane component
1709	 62.44	-1	1945185..1946036	+	283	115359679	-	Bamb_4934	-	binding-protein-dependent transport systems inner membrane component
1710	 66.67	0	1946223..1947344	+	373	115359680	-	Bamb_4935	-	filamentation induced by cAMP protein Fic
1711	 69.44	0	1947439..1948917	-	492	115359681	-	Bamb_4936	-	2-nitropropane dioxygenase, NPD
1712	 64.98	0	1949113..1949883	-	256	115359682	-	Bamb_4937	-	DNA-binding transcriptional regulator GlcC
1713	 69.13	0	1950107..1951606	+	499	115359683	-	Bamb_4938	-	glycolate oxidase subunit GlcD
1714	 73.59	+1	1951606..1952688	+	360	115359684	glcE	Bamb_4939	-	glycolate oxidase FAD binding subunit
1715	 71.42	+1	1952713..1953933	+	406	115359685	glcF	Bamb_4940	-	glycolate oxidase iron-sulfur subunit
1716	 69.63	0	1953956..1954360	+	134	115359686	-	Bamb_4941	-	hypothetical protein
1717	 68.41	0	1954397..1956571	+	724	115359687	-	Bamb_4942	-	malate synthase G
1718	 62.32	-1	1956650..1956994	-	114	115359688	-	Bamb_4943	-	hypothetical protein
1719	 67.75	0	1957058..1958620	+	520	115359689	-	Bamb_4944	-	diguanylate cyclase
1720	 69.42	0	1958754..1960133	+	459	115359690	-	Bamb_4945	-	periplasmic sensor signal transduction histidine kinase
1721	 69.15	0	1960165..1960809	+	214	115359691	-	Bamb_4946	-	two component LuxR family transcriptional regulator
1722	 64.06	0	1960920..1961570	-	216	115359692	-	Bamb_4947	-	toluene tolerance family protein
1723	 69.63	0	1961847..1964480	+	877	115359693	-	Bamb_4948	-	RND efflux transporter
1724	 69.45	0	1964473..1965477	+	334	115359694	-	Bamb_4949	-	VacJ family lipoprotein
1725	 76.27	+2	1965589..1966296	-	235	115359695	-	Bamb_4950	-	hypothetical protein
1726	 68.24	0	1966300..1968273	-	657	115359696	-	Bamb_4951	-	squalene-hopene cyclase
1727	 73.44	+1	1968289..1969542	-	417	115359697	-	Bamb_4952	-	amine oxidase
1728	 69.49	0	1969547..1970395	-	282	115359698	-	Bamb_4953	-	squalene/phytoene synthase
1729	 69.07	0	1970656..1970988	-	110	115359699	-	Bamb_4954	-	hypothetical protein
1730	 69.83	0	1971207..1972091	+	294	115359700	-	Bamb_4955	-	esterase
1731	 68.10	0	1972136..1973110	-	324	115359701	-	Bamb_4956	-	diguanylate cyclase with PAS/PAC sensor
1732	 66.04	0	1973107..1973742	-	211	115359702	-	Bamb_4957	-	CheC, inhibitor of MCP methylation
1733	 59.08	-1	1973726..1974094	-	122	115359703	-	Bamb_4958	-	response regulator receiver protein
1734	 67.96	0	1974561..1976801	+	746	115359704	-	Bamb_4959	-	periplasmic sensor hybrid histidine kinase
1735	 65.95	0	1976847..1977401	-	184	115359705	-	Bamb_4960	-	NADPH-dependent FMN reductase
1736	 64.32	0	1977767..1978363	+	198	115359706	-	Bamb_4961	-	RNA polymerase sigma factor
1737	 70.18	0	1978344..1978571	+	75	115359707	-	Bamb_4962	-	hypothetical protein
1738	 74.80	+1	1978605..1978973	+	122	115359708	-	Bamb_4963	-	hypothetical protein
1739	 63.89	0	1979067..1979426	-	119	115359709	-	Bamb_4964	-	arsenate reductase
1740	 60.94	-1	1980429..1981091	+	220	115359710	-	Bamb_4965	-	cobyrinic acid a,c-diamide synthase
1741	 63.09	0	1981115..1982176	+	353	115359711	-	Bamb_4966	-	parB-like partition proteins
1742	 64.41	0	1982267..1983730	-	487	115359712	-	Bamb_4967	-	hypothetical protein
1743	 64.04	0	1985444..1986625	+	393	115359713	-	Bamb_4968	-	hypothetical protein
1744	 65.09	0	1986766..1987779	-	337	115359714	-	Bamb_4969	-	phage integrase family protein
1745	 65.08	0	1987882..1988259	-	125	115359715	-	Bamb_4970	-	hypothetical protein
1746	 69.93	0	1988387..1988998	-	203	115359716	-	Bamb_4971	-	XRE family transcriptional regulator
1747	 67.33	0	1989160..1990359	+	399	115359717	-	Bamb_4972	-	2-amino-3-ketobutyrate coenzyme A ligase
1748	 63.75	0	1990373..1991401	+	342	115359718	tdh	Bamb_4973	-	L-threonine 3-dehydrogenase
1749	 66.83	0	1992128..1992742	+	204	115359719	-	Bamb_4974	-	TetR family transcriptional regulator
1750	 64.58	0	1992798..1993277	+	159	115359720	-	Bamb_4975	-	hypothetical protein
1751	 67.31	0	1993776..1994861	-	361	115359721	-	Bamb_4976	-	tartrate dehydrogenase
1752	 69.37	0	1994979..1995902	+	307	115359722	-	Bamb_4977	-	LysR family transcriptional regulator
1753	 68.25	0	1996062..1997009	-	315	115359723	-	Bamb_4978	-	N-acetyl-gamma-glutamyl-phosphate reductase
1754	 71.07	+1	1997129..1998013	+	294	115359724	-	Bamb_4979	-	LysR family transcriptional regulator
1755	 67.74	0	1998182..1998646	-	154	115359725	-	Bamb_4980	-	hypothetical protein
1756	 66.67	0	1998707..1999924	-	405	115359726	-	Bamb_4981	-	patatin
1757	 64.38	0	2000055..2000840	-	261	115359727	-	Bamb_4982	-	3-hydroxybutyrate dehydrogenase
1758	 62.75	-1	2000892..2001632	-	246	115359728	-	Bamb_4983	-	acetoacetate decarboxylase
1759	 69.59	0	2002079..2002660	+	193	115359729	-	Bamb_4984	-	phosphoesterase, PA-phosphatase related
1760	 62.67	-1	2002699..2002923	-	74	115359730	-	Bamb_4985	-	hypothetical protein
1761	 70.19	0	2003043..2003864	-	273	115359731	-	Bamb_4986	-	FAD-binding 9, siderophore-interacting domain-containing protein
1762	 69.61	0	2003902..2004615	-	237	115359732	-	Bamb_4987	-	PadR-like family transcriptional regulator
1763	 69.76	0	2005426..2006427	+	333	115359733	-	Bamb_4988	-	FHA domain-containing protein
1764	 71.19	+1	2006424..2010470	+	1348	115359734	-	Bamb_4989	-	serine/threonine protein kinase
1765	 58.84	-1	2010504..2010848	+	114	115359735	-	Bamb_4990	-	hypothetical protein
1766	 60.61	-1	2010865..2011227	+	120	115359736	-	Bamb_4991	-	hypothetical protein
1767	 68.72	0	2011322..2013559	+	745	115359737	-	Bamb_4992	-	hypothetical protein
1768	 59.38	-1	2013686..2014261	-	191	115359738	-	Bamb_4993	-	hypothetical protein
1769	 63.64	0	2014542..2014673	+	43	115359739	-	Bamb_4994	-	betaine-aldehyde dehydrogenase
1770	 65.19	0	2014860..2015810	-	316	115359740	-	Bamb_4995	-	AraC family transcriptional regulator
1771	 63.16	0	2015912..2016139	-	75	115359741	-	Bamb_4996	-	hypothetical protein
1772	 67.73	0	2016196..2017794	+	532	115359742	-	Bamb_4997	-	glucose-methanol-choline oxidoreductase
1773	 66.06	0	2017836..2019323	+	495	115359743	-	Bamb_4998	-	aldehyde dehydrogenase
1774	 66.76	0	2019393..2020484	-	363	115359744	-	Bamb_4999	-	outer membrane protein (porin)
1775	 71.32	+1	2020696..2021340	-	214	115359745	-	Bamb_5000	-	dehydrogenases with different specificities-like protein
1776	 71.39	+1	2021395..2022516	-	373	115359746	-	Bamb_5001	-	alcohol dehydrogenase
1777	 69.12	0	2022518..2023819	-	433	115359747	-	Bamb_5002	-	major facilitator transporter
1778	 61.05	-1	2023838..2024371	-	177	115359748	-	Bamb_5003	-	cupin 2 domain-containing protein
1779	 69.05	0	2024559..2025524	+	321	115359749	-	Bamb_5004	-	AraC family transcriptional regulator
1780	 66.88	0	2025787..2026734	-	315	115359750	-	Bamb_5005	-	aldo/keto reductase
1781	 67.31	0	2027109..2027729	-	206	115359751	-	Bamb_5006	-	lysine exporter protein LysE/YggA
1782	 68.90	0	2027836..2028729	+	297	115359752	-	Bamb_5007	-	chromosome replication initiation inhibitor protein
1783	 67.33	0	2028799..2029548	-	249	115359753	-	Bamb_5008	-	Crp/FNR family transcriptional regulator
1784	 67.30	0	2029696..2030166	-	156	115359754	-	Bamb_5009	-	UspA domain-containing protein
1785	 68.61	0	2030770..2031180	-	136	115359755	-	Bamb_5010	-	hypothetical protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.