IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
122	 72.11	+1	133854..134000	+	48	115358092	-	Bamb_3341	-	entericidin EcnAB
123	 63.44	0	134066..134716	+	216	115358093	leuD	Bamb_3342	-	isopropylmalate isomerase small subunit
124	 66.39	0	134792..135859	+	355	115358094	-	Bamb_3343	-	3-isopropylmalate dehydrogenase
125	 64.35	0	136181..137302	+	373	115358095	-	Bamb_3344	-	aspartate-semialdehyde dehydrogenase
126	 73.53	+1	137569..139653	+	694	115358096	-	Bamb_3345	-	hypothetical protein
127	 68.51	0	139653..140465	+	270	115358097	truA	Bamb_3346	-	tRNA pseudouridine synthase A
128	 69.09	0	140462..141163	+	233	115358098	-	Bamb_3347	-	N-(5'-phosphoribosyl)anthranilate isomerase
129	 66.42	0	141220..142413	+	397	115358099	-	Bamb_3348	-	tryptophan synthase subunit beta
130	 65.61	0	142421..143272	+	283	115358100	-	Bamb_3349	-	DNA methylase N-4/N-6 domain-containing protein
131	 69.11	0	143314..144132	+	272	115358101	trpA	Bamb_3350	-	tryptophan synthase subunit alpha
132	 65.86	0	144199..145071	+	290	115358102	-	Bamb_3351	-	acetyl-CoA carboxylase subunit beta
133	 67.51	0	145172..146482	+	436	115358103	-	Bamb_3352	-	FolC bifunctional protein
134	 72.14	+1	146512..147369	+	285	115358104	-	Bamb_3353	-	sporulation domain-containing protein
135	 65.86	0	147376..147870	+	164	115358105	-	Bamb_3354	-	colicin V production protein
136	 64.84	0	147922..149454	+	510	115358106	-	Bamb_3355	-	amidophosphoribosyltransferase
137	 66.67	0	149673..150905	+	410	115358107	-	Bamb_3356	-	O-succinylhomoserine sulfhydrylase
138	 70.69	0	151001..151969	-	322	115358108	-	Bamb_3357	-	NAD-dependent epimerase/dehydratase
139	 65.14	0	151956..153002	-	348	115358109	-	Bamb_3358	-	GDP-mannose 4,6-dehydratase
140	 69.30	0	153038..154102	-	354	115358110	-	Bamb_3359	-	acyltransferase 3
141	 68.74	0	154572..156788	+	738	115358111	-	Bamb_3361	-	hypothetical protein
142	 66.33	0	156830..158296	+	488	115358112	-	Bamb_3362	-	polysaccharide biosynthesis protein
143	 59.83	-1	158310..159362	-	350	115358113	-	Bamb_3363	-	IS605 family transposase OrfB
144	 70.03	0	159479..161947	+	822	115358114	-	Bamb_3364	-	glycosyl transferase, group 1
145	 68.03	0	162364..163539	-	391	115358115	-	Bamb_3365	-	acyltransferase 3
146	 62.50	-1	163753..163896	+	47	115358116	-	Bamb_3366	-	hypothetical protein
147	 64.19	0	164126..165013	+	295	115358117	-	Bamb_3367	-	UTP-glucose-1-phosphate uridylyltransferase
148	 68.57	0	165223..165537	+	104	115358118	-	Bamb_3368	-	hypothetical protein
149	 67.20	0	165501..166619	-	372	115358119	-	Bamb_3369	-	acyltransferase 3
150	 57.14	-2	166646..167107	-	153	115358120	-	Bamb_3370	-	acyltransferase family protein
151	 63.19	0	167138..167425	-	95	115358121	-	Bamb_3371	-	acyltransferase family protein
152	 67.93	0	167797..168192	+	131	115358122	-	Bamb_3372	-	streptomycin 3''-adenylyltransferase
153	 66.46	0	168645..169118	-	157	115358123	-	Bamb_3373	-	3-demethylubiquinone-9 3-methyltransferase
154	 64.51	0	169507..170664	-	385	115358124	-	Bamb_3374	-	porin
155	 67.52	0	171109..172041	-	310	115358125	-	Bamb_3375	-	putative ribonuclease BN
156	 62.77	-1	172181..172771	+	196	115358126	-	Bamb_3376	-	formate dehydrogenase
157	 63.71	0	172784..175252	+	822	115358127	-	Bamb_3377	-	formate dehydrogenase, alpha subunit
158	 65.79	0	175263..176177	+	304	115358128	-	Bamb_3378	-	formate dehydrogenase, beta subunit
159	 63.16	0	176174..176800	+	208	115358129	-	Bamb_3379	-	formate dehydrogenase, gamma subunit
160	 67.26	0	176827..177843	+	338	115358130	-	Bamb_3380	-	formate dehydrogenase accessory protein FdhE
161	 70.08	0	177920..179356	+	478	115358131	-	Bamb_3381	-	selenocysteine synthase
162	 71.13	+1	179357..181282	+	641	115358132	-	Bamb_3382	-	selenocysteine-specific translation elongation factor
163	 63.52	0	181580..182596	-	338	115358133	-	Bamb_3383	-	dTDP-glucose 4,6-dehydratase
164	 69.94	0	182593..183477	-	294	115358134	-	Bamb_3384	-	dTDP-4-dehydrorhamnose reductase
165	 68.38	0	183474..184055	-	193	115358135	-	Bamb_3385	-	dTDP-4-dehydrorhamnose 3,5-epimerase
166	 64.10	0	184052..184948	-	298	115358136	-	Bamb_3386	-	glucose-1-phosphate thymidylyltransferase
167	 69.17	0	185048..186445	-	465	115358137	-	Bamb_3387	-	major facilitator transporter
168	 68.47	0	186442..187161	-	239	115358138	-	Bamb_3388	-	ABC transporter related
169	 69.21	0	187158..187943	-	261	115358139	-	Bamb_3389	-	ABC transporter related
170	 71.85	+1	187940..188827	-	295	115358140	-	Bamb_3390	-	inner-membrane translocator
171	 68.12	0	188820..189713	-	297	115358141	-	Bamb_3391	-	inner-membrane translocator
172	 67.39	0	189749..190849	-	366	115358142	-	Bamb_3392	-	extracellular ligand-binding receptor
173	 64.67	0	191168..191518	+	116	115358143	-	Bamb_3393	-	endoribonuclease L-PSP
174	 66.59	0	191596..192840	+	414	115358144	-	Bamb_3394	-	FAD dependent oxidoreductase
175	 69.00	0	192837..193652	+	271	115358145	-	Bamb_3395	-	Asp/Glu racemase
176	 62.25	-1	193742..194443	+	233	115358146	-	Bamb_3396	-	GntR family transcriptional regulator
177	 65.31	0	194598..195482	+	294	115358147	-	Bamb_3397	-	rhamnosyltransferase
178	 66.88	0	195561..196496	+	311	115358148	-	Bamb_3398	-	dihydrodipicolinate synthetase
179	 65.73	0	196602..197780	+	392	115358149	-	Bamb_3399	-	mandelate racemase/muconate lactonizing protein
180	 67.68	0	197799..198587	+	262	115358150	-	Bamb_3400	-	short-chain dehydrogenase/reductase SDR
181	 61.37	-1	198599..198919	+	106	115358151	-	Bamb_3401	-	L-rhamnose 1-epimerase
182	 66.44	0	199038..199934	+	298	115358152	-	Bamb_3402	-	amidohydrolase 2
183	 69.14	0	199998..200159	-	53	115358153	-	Bamb_3403	-	putative lipoprotein
184	 65.11	0	200225..201382	-	385	115358154	-	Bamb_3404	-	hypothetical protein
185	 59.62	-1	201752..201964	+	70	115358155	-	Bamb_3405	-	hypothetical protein
186	 69.97	0	202016..202318	-	100	115358156	-	Bamb_3406	-	hypothetical protein
187	 65.25	0	202405..202827	-	140	115358157	-	Bamb_3407	-	NUDIX hydrolase
188	 67.53	0	202925..204313	-	462	115358158	-	Bamb_3408	-	uracil-xanthine permease
189	 72.49	+1	204509..205486	-	325	115358159	-	Bamb_3409	-	LysR family transcriptional regulator
190	 67.64	0	205619..206335	+	238	115358160	-	Bamb_3410	-	short-chain dehydrogenase/reductase SDR
191	 65.48	0	206525..206860	+	111	115358161	-	Bamb_3411	-	antibiotic biosynthesis monooxygenase
192	 70.55	0	206857..208014	+	385	115358162	-	Bamb_3412	-	alcohol dehydrogenase
193	 70.77	0	208187..208771	+	194	115358163	-	Bamb_3413	-	hypothetical protein
194	 69.79	0	208792..209784	-	330	115358164	-	Bamb_3414	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
195	 67.16	0	210003..210410	-	135	115358165	-	Bamb_3415	-	hypothetical protein
196	 66.54	0	210851..212437	+	528	115358166	-	Bamb_3416	-	extracellular solute-binding protein
197	 68.65	0	212571..213527	-	318	115358167	-	Bamb_3417	-	taurine dioxygenase
198	 58.89	-1	214248..214427	+	59	115358168	-	Bamb_3418	-	Flp/Fap pilin component
199	 72.92	+1	214516..214995	+	159	115358169	-	Bamb_3419	-	peptidase A24A, prepilin type IV
200	 74.44	+1	215016..216044	+	342	115358170	-	Bamb_3420	-	Flp pilus assembly CpaB
201	 67.68	0	216099..217481	+	460	115358171	-	Bamb_3421	-	type II and III secretion system protein
202	 73.18	+1	217496..217879	+	127	115358172	-	Bamb_3422	-	hypothetical protein
203	 68.22	0	217901..219124	+	407	115358173	-	Bamb_3423	-	response regulator receiver protein
204	 68.50	0	219121..220539	+	472	115358174	-	Bamb_3424	-	type II secretion system protein E
205	 68.71	0	220536..221513	+	325	115358175	-	Bamb_3425	-	type II secretion system protein
206	 70.79	0	221510..222454	+	314	115358176	-	Bamb_3426	-	type II secretion system protein
207	 72.73	+1	222451..223308	+	285	115358177	-	Bamb_3427	-	TPR repeat-containing protein
208	 67.83	0	223305..223733	+	142	115358178	-	Bamb_3428	-	TadE family protein
209	 70.12	0	223726..224766	+	346	115358179	-	Bamb_3429	-	hypothetical protein
210	 70.51	0	224730..226004	-	424	115358180	-	Bamb_3430	-	hypothetical protein
211	 68.06	0	226019..227095	-	358	115358181	-	Bamb_3431	-	glycosyl transferase family protein
212	 71.76	+1	227369..227761	+	130	115358182	-	Bamb_3432	-	hypothetical protein
213	 73.54	+1	227778..228767	-	329	115358183	-	Bamb_3433	-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
214	 72.47	+1	228908..229786	-	292	115358184	-	Bamb_3434	-	LysR family transcriptional regulator
215	 58.97	-1	229906..230958	+	350	115358185	-	Bamb_3435	-	IS605 family transposase OrfB
216	 73.41	+1	231076..232632	+	518	115358186	-	Bamb_3436	-	major facilitator transporter
217	 71.87	+1	232692..233864	-	390	115358187	-	Bamb_3437	-	LysR family transcriptional regulator
218	 69.50	0	233959..235227	+	422	115358188	-	Bamb_3438	-	hypothetical protein
219	 62.99	0	235291..236052	-	253	115358189	-	Bamb_3439	-	hypothetical protein
220	 66.07	0	236595..236927	+	110	115358190	-	Bamb_3440	-	hypothetical protein
221	 72.05	+1	237017..237907	-	296	115358191	-	Bamb_3441	-	3-hydroxyisobutyrate dehydrogenase
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.