IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1614	 69.19	0	1834991..1836181	-	396	115359584	-	Bamb_4839	-	putative AcnD-accessory protein PrpF
1615	 67.44	0	1836208..1838805	-	865	115359585	-	Bamb_4840	-	aconitate hydratase
1616	 65.22	0	1838882..1840054	-	390	115359586	-	Bamb_4841	-	methylcitrate synthase
1617	 66.22	0	1840177..1841070	-	297	115359587	prpB	Bamb_4842	-	2-methylisocitrate lyase
1618	 72.11	+1	1841241..1843223	+	660	115359588	-	Bamb_4843	-	sigma-54 dependent trancsriptional regulator
1619	 67.28	0	1843276..1843923	-	215	115359589	-	Bamb_4844	-	hypothetical protein
1620	 68.75	0	1844023..1844406	+	127	115359590	-	Bamb_4845	-	glyoxalase/bleomycin resistance protein/dioxygenase
1621	 67.14	0	1844602..1845450	-	282	115359591	-	Bamb_4846	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
1622	 67.22	0	1846032..1846934	+	300	115359592	-	Bamb_4847	-	IclR family transcriptional regulator
1623	 62.68	-1	1847023..1847574	+	183	115359593	-	Bamb_4848	-	hypothetical protein
1624	 69.33	0	1848275..1850716	-	813	115359594	-	Bamb_4849	-	GCN5-related N-acetyltransferase
1625	 61.62	-1	1851204..1851500	-	98	115359595	-	Bamb_4850	-	histone family protein nucleoid-structuring protein H-NS
1626	 58.86	-1	1851604..1851936	-	110	115359596	-	Bamb_4851	-	hypothetical protein
1627	 67.05	0	1851950..1852477	-	175	115359597	-	Bamb_4852	-	hypothetical protein
1628	 69.00	0	1852499..1854040	-	513	115359598	-	Bamb_4853	-	sigma-54 dependent trancsriptional regulator
1629	 66.10	0	1854367..1855770	+	467	115359599	-	Bamb_4854	-	citrate transporter
1630	 66.67	0	1856282..1856533	+	83	115359600	-	Bamb_4855	-	hypothetical protein
1631	 70.24	0	1856582..1858177	-	531	115359601	-	Bamb_4856	-	thioredoxin domain-containing protein
1632	 64.27	0	1858511..1859011	-	166	115359602	-	Bamb_4857	-	GCN5-related N-acetyltransferase
1633	 69.81	0	1859563..1861884	+	773	115359603	-	Bamb_4858	-	phospholipase C
1634	 68.15	0	1862123..1862392	+	89	115359604	-	Bamb_4859	-	hypothetical protein
1635	 69.69	0	1862556..1863548	+	330	115359605	-	Bamb_4860	-	rhodanese domain-containing protein
1636	 65.90	0	1863616..1865052	-	478	115359606	-	Bamb_4861	-	outer membrane porin
1637	 70.48	0	1865249..1866271	-	340	115359607	-	Bamb_4862	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1638	 69.39	0	1866268..1867260	-	330	115359608	-	Bamb_4863	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1639	 68.66	0	1867262..1868164	-	300	115359609	-	Bamb_4864	-	binding-protein-dependent transport systems inner membrane component
1640	 66.56	0	1868178..1869116	-	312	115359610	-	Bamb_4865	-	binding-protein-dependent transport systems inner membrane component
1641	 64.37	0	1869128..1870741	-	537	115359611	-	Bamb_4866	-	extracellular solute-binding protein
1642	 62.69	-1	1870919..1871497	-	192	115359612	-	Bamb_4867	-	XRE family transcriptional regulator
1643	 65.88	0	1871994..1873517	+	507	115359613	-	Bamb_4868	-	amino acid/peptide transporter
1644	 69.08	0	1873638..1873844	+	68	115359614	-	Bamb_4869	-	hypothetical protein
1645	 71.73	+1	1873900..1875024	-	374	115359615	-	Bamb_4870	-	hypothetical protein
1646	 71.44	+1	1875431..1876330	-	299	115359616	-	Bamb_4871	-	transporter DMT superfamily protein
1647	 67.30	0	1876343..1876660	-	105	115359617	-	Bamb_4872	-	acylphosphatase
1648	 69.74	0	1876852..1877859	+	335	115359618	-	Bamb_4873	-	NAD-dependent epimerase/dehydratase
1649	 72.17	+1	1877968..1879365	+	465	115359619	-	Bamb_4874	-	hypothetical protein
1650	 70.96	0	1879474..1880661	-	395	115359620	-	Bamb_4875	-	glycosyl transferase family protein
1651	 66.24	0	1881094..1882035	+	313	115359621	ispH	Bamb_4876	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1652	 62.45	-1	1882048..1883208	+	386	115359622	-	Bamb_4877	-	radical SAM domain-containing protein
1653	 64.37	0	1883366..1883626	-	86	115359623	-	Bamb_4878	-	hypothetical protein
1654	 69.79	0	1883808..1884287	-	159	115359624	-	Bamb_4879	-	hypothetical protein
1655	 67.20	0	1884511..1884885	-	124	115359625	-	Bamb_4880	-	hypothetical protein
1656	 64.69	0	1885379..1885732	+	117	115359626	-	Bamb_4881	-	aromatic ring-cleaving dioxygenase-like protein
1657	 66.90	0	1885841..1886272	+	143	115359627	-	Bamb_4882	-	hypothetical protein
1658	 65.22	0	1886306..1886926	-	206	115359628	-	Bamb_4883	-	hemolysin III family channel protein
1659	 66.57	0	1887361..1889439	-	692	115359629	-	Bamb_4884	-	carbon starvation protein CstA
1660	 66.20	0	1889738..1890166	-	142	115359630	-	Bamb_4885	-	PRC-barrel domain-containing protein
1661	 68.35	0	1890599..1891729	-	376	115359631	-	Bamb_4886	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1662	 67.85	0	1891868..1892545	+	225	115359632	-	Bamb_4887	-	hypothetical protein
1663	 60.28	-1	1892574..1892996	+	140	115359633	-	Bamb_4888	-	hypothetical protein
1664	 68.35	0	1893081..1893791	-	236	115359634	-	Bamb_4889	-	hypothetical protein
1665	 71.37	+1	1894209..1894973	+	254	115359635	-	Bamb_4890	-	short chain dehydrogenase
1666	 70.78	0	1894992..1895696	-	234	115359636	-	Bamb_4891	-	MOSC domain-containing protein
1667	 70.35	0	1895693..1896589	-	298	115359637	-	Bamb_4892	-	dihydrodipicolinate synthase
1668	 66.16	0	1896640..1897422	-	260	115359638	-	Bamb_4893	-	hypothetical protein
1669	 64.09	0	1897557..1898099	+	180	115359639	-	Bamb_4894	-	XRE family transcriptional regulator
1670	 67.48	0	1898131..1898868	+	245	115359640	-	Bamb_4895	-	histidine utilization repressor
1671	 67.49	0	1898960..1899808	-	282	115359641	-	Bamb_4896	-	phytanoyl-CoA dioxygenase
1672	 66.04	0	1899857..1900660	-	267	115359642	-	Bamb_4897	-	extracellular solute-binding protein
1673	 68.97	0	1901175..1902041	+	288	115359643	-	Bamb_4898	-	LysR family transcriptional regulator
1674	 66.87	0	1902108..1902596	-	162	115359644	-	Bamb_4899	-	hypothetical protein
1675	 72.32	+1	1902661..1903845	-	394	115359645	-	Bamb_4900	-	cytosine deaminase
1676	 67.09	0	1903856..1904323	+	155	115359646	-	Bamb_4901	-	hypothetical protein
1677	 69.76	0	1904529..1905143	+	204	115359647	-	Bamb_4902	-	17 kDa surface antigen
1678	 67.06	0	1905436..1905942	+	168	115359648	-	Bamb_4903	-	GCN5-related N-acetyltransferase
1679	 68.92	0	1905995..1907992	-	665	115359649	-	Bamb_4904	-	glycoside hydrolase family protein
1680	 66.21	0	1908256..1908915	-	219	115359650	-	Bamb_4905	-	hypothetical protein
1681	 69.32	0	1909307..1910665	+	452	115359651	-	Bamb_4906	-	aminotransferase
1682	 67.85	0	1910843..1912027	-	394	115359652	-	Bamb_4907	-	amidohydrolase
1683	 73.17	+1	1912066..1913310	-	414	115359653	-	Bamb_4908	-	diaminopropionate ammonia-lyase
1684	 64.78	0	1913493..1913969	+	158	115359654	-	Bamb_4909	-	AsnC family transcriptional regulator
1685	 66.83	0	1913972..1914589	-	205	115359655	-	Bamb_4910	-	DNA polymerase III, epsilon subunit
1686	 69.16	0	1914819..1916540	-	573	115359656	-	Bamb_4911	-	feruloyl esterase
1687	 71.98	+1	1916569..1917717	-	382	115359657	-	Bamb_4912	-	porin
1688	 72.14	+1	1917781..1918986	-	401	115359658	-	Bamb_4913	-	putative 3-hydroxyphenylpropionic transporter MhpT
1689	 70.55	0	1919207..1921114	-	635	115359659	-	Bamb_4914	-	feruloyl-CoA synthase
1690	 71.70	+1	1921111..1922559	-	482	115359660	-	Bamb_4915	-	aldehyde dehydrogenase
1691	 66.06	0	1922607..1923437	-	276	115359661	-	Bamb_4916	-	p-hydroxycinnamoyl CoA hydratase/lyase
1692	 70.63	0	1923662..1924165	-	167	115359662	-	Bamb_4917	-	MarR family transcriptional regulator
1693	 70.67	0	1924338..1925237	-	299	115359663	-	Bamb_4918	-	SMP-30/gluconolaconase/LRE domain-containing protein
1694	 66.08	0	1925283..1926302	-	339	115359664	araH	Bamb_4919	-	L-arabinose transporter permease protein
1695	 70.45	0	1926338..1927897	-	519	115359665	araG	Bamb_4920	-	L-arabinose transporter ATP-binding protein
1696	 68.06	0	1927918..1928922	-	334	115359666	-	Bamb_4921	-	periplasmic binding protein/LacI transcriptional regulator
1697	 71.51	+1	1929004..1929933	-	309	115359667	-	Bamb_4922	-	galactose 1-dehydrogenase
1698	 68.71	0	1929958..1930887	-	309	115359668	-	Bamb_4923	-	dihydrodipicolinate synthetase
1699	 69.83	0	1930940..1932298	-	452	115359669	-	Bamb_4924	-	major facilitator transporter
1700	 68.66	0	1932532..1934283	-	583	115359670	-	Bamb_4925	-	dihydroxy-acid dehydratase
1701	 71.08	+1	1934398..1935348	+	316	115359671	-	Bamb_4926	-	LysR family transcriptional regulator
1702	 65.41	0	1935351..1935827	-	158	115359672	-	Bamb_4927	-	OsmC family protein
1703	 68.61	0	1936235..1938340	+	701	115359673	-	Bamb_4928	-	TonB-dependent siderophore receptor
1704	 71.28	+1	1938456..1939496	-	346	115359674	-	Bamb_4929	-	LacI family transcription regulator
1705	 71.02	0	1939687..1940835	+	382	115359675	-	Bamb_4930	-	ABC transporter related
1706	 70.43	0	1940844..1942835	+	663	115359676	-	Bamb_4931	-	Beta-galactosidase
1707	 65.71	0	1942903..1944162	+	419	115359677	-	Bamb_4932	-	extracellular solute-binding protein
1708	 66.46	0	1944223..1945167	+	314	115359678	-	Bamb_4933	-	binding-protein-dependent transport systems inner membrane component
1709	 62.44	-1	1945185..1946036	+	283	115359679	-	Bamb_4934	-	binding-protein-dependent transport systems inner membrane component
1710	 66.67	0	1946223..1947344	+	373	115359680	-	Bamb_4935	-	filamentation induced by cAMP protein Fic
1711	 69.44	0	1947439..1948917	-	492	115359681	-	Bamb_4936	-	2-nitropropane dioxygenase, NPD
1712	 64.98	0	1949113..1949883	-	256	115359682	-	Bamb_4937	-	DNA-binding transcriptional regulator GlcC
1713	 69.13	0	1950107..1951606	+	499	115359683	-	Bamb_4938	-	glycolate oxidase subunit GlcD
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.