IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1564	 68.03	0	1783283..1783942	-	219	115359534	-	Bamb_4789	-	isoprenylcysteine carboxyl methyltransferase
1565	 64.85	0	1784118..1784282	-	54	115359535	-	Bamb_4790	-	hypothetical protein
1566	 69.05	0	1784515..1784934	-	139	115359536	-	Bamb_4791	-	histidine triad (HIT) protein
1567	 70.23	0	1785199..1786602	+	467	115359537	-	Bamb_4792	-	beta-lactamase
1568	 66.51	0	1786677..1787300	-	207	115359538	-	Bamb_4793	-	glutathione S-transferase domain-containing protein
1569	 66.03	0	1787441..1787911	-	156	115359539	-	Bamb_4794	-	integral membrane protein-like protein
1570	 71.29	+1	1787908..1789161	-	417	115359540	-	Bamb_4795	-	NAD-dependent epimerase/dehydratase
1571	 64.79	0	1789303..1789836	-	177	115359541	-	Bamb_4796	-	transcriptional regulators-like protein
1572	 63.92	0	1790042..1791244	+	400	115359542	-	Bamb_4797	-	trans-2-enoyl-CoA reductase
1573	 70.50	0	1791299..1792003	-	234	115359543	-	Bamb_4798	-	short chain dehydrogenase
1574	 70.92	0	1792300..1792887	+	195	115359544	-	Bamb_4799	-	TetR family transcriptional regulator
1575	 69.60	0	1792919..1793497	-	192	115359545	-	Bamb_4800	-	hypothetical protein
1576	 69.49	0	1793646..1794176	-	176	115359546	-	Bamb_4801	-	GCN5-related N-acetyltransferase
1577	 69.55	0	1794383..1794868	+	161	115359547	-	Bamb_4802	-	activator of Hsp90 ATPase 1 family protein
1578	 69.18	0	1794990..1795466	+	158	115359548	-	Bamb_4803	-	activator of Hsp90 ATPase 1 family protein
1579	 66.31	0	1795492..1796616	-	374	115359549	-	Bamb_4804	-	amidohydrolase 2
1580	 68.50	0	1796618..1797925	-	435	115359550	-	Bamb_4805	-	major facilitator transporter
1581	 68.95	0	1798017..1799330	-	437	115359551	-	Bamb_4806	-	L-carnitine dehydratase/bile acid-inducible protein F
1582	 70.62	0	1799327..1800313	-	328	115359552	-	Bamb_4807	-	pyruvate carboxyltransferase
1583	 71.29	+1	1800488..1801309	+	273	115359553	-	Bamb_4808	-	IclR family transcriptional regulator
1584	 68.54	0	1801462..1802100	+	212	115359554	-	Bamb_4809	-	DSBA oxidoreductase
1585	 70.53	0	1802119..1803102	-	327	115359555	-	Bamb_4810	-	LysR family transcriptional regulator
1586	 74.05	+1	1803203..1804435	+	410	115359556	-	Bamb_4811	-	major facilitator transporter
1587	 65.01	0	1804832..1805557	+	241	115359557	-	Bamb_4812	-	phosphoesterase, PA-phosphatase related
1588	 67.12	0	1805694..1806353	-	219	115359558	-	Bamb_4813	-	glutathione S-transferase domain-containing protein
1589	 71.62	+1	1806480..1807550	-	356	115359559	-	Bamb_4814	-	beta-lactamase domain-containing protein
1590	 71.63	+1	1807787..1808692	+	301	115359560	-	Bamb_4815	-	chromosome replication initiation inhibitor protein
1591	 65.73	0	1808852..1809064	+	70	115359561	-	Bamb_4816	-	hypothetical protein
1592	 68.05	0	1809162..1810175	-	337	115359562	-	Bamb_4817	-	threonine aldolase
1593	 64.91	0	1810561..1811982	+	473	115359563	-	Bamb_4818	-	cytochrome bd ubiquinol oxidase, subunit I
1594	 65.38	0	1812012..1813019	+	335	115359564	-	Bamb_4819	-	cytochrome d ubiquinol oxidase, subunit II
1595	 62.78	-1	1812991..1813170	+	59	115359565	-	Bamb_4820	-	hypothetical protein
1596	 61.82	-1	1813262..1813591	-	109	115359566	-	Bamb_4821	-	hypothetical protein
1597	 63.08	0	1813706..1813900	-	64	115359567	-	Bamb_4822	-	hypothetical protein
1598	 67.02	0	1814059..1815735	-	558	115359568	-	Bamb_4823	-	type I phosphodiesterase/nucleotide pyrophosphatase
1599	 63.06	0	1815998..1816219	+	73	115359569	-	Bamb_4824	-	hypothetical protein
1600	 68.06	0	1816288..1820094	-	1268	115359570	-	Bamb_4825	-	hypothetical protein
1601	 72.29	+1	1820246..1821685	-	479	115359571	-	Bamb_4826	-	hypothetical protein
1602	 72.33	+1	1822078..1824918	+	946	115359572	-	Bamb_4827	-	heavy metal translocating P-type ATPase
1603	 54.43	-2	1824973..1825209	-	78	115359573	-	Bamb_4828	-	hypothetical protein
1604	 69.38	0	1825924..1826403	-	159	115359574	-	Bamb_4829	-	GCN5-related N-acetyltransferase
1605	 60.90	-1	1826627..1826782	-	51	115359575	-	Bamb_4830	-	hypothetical protein
1606	 71.88	+1	1826956..1828470	-	504	115359576	-	Bamb_4831	-	hypothetical protein
1607	 68.96	0	1828574..1829272	-	232	115359577	-	Bamb_4832	-	MgtC/SapB transporter
1608	 71.22	+1	1829309..1830493	+	394	115359578	-	Bamb_4833	-	N-acylglucosamine 2-epimerase
1609	 70.79	0	1830466..1832091	-	541	115359579	-	Bamb_4834	-	methyl-accepting chemotaxis sensory transducer
1610	 66.67	0	1832352..1832795	+	147	115359580	-	Bamb_4835	-	hypothetical protein
1611	 58.87	-1	1832918..1833199	-	93	115359581	-	Bamb_4836	-	addiction module antitoxin
1612	 55.82	-2	1833189..1833437	-	82	115359582	-	Bamb_4837	-	prevent-host-death family protein
1613	 72.17	+1	1833580..1834632	-	350	115359583	-	Bamb_4838	-	L-carnitine dehydratase/bile acid-inducible protein F
1614	 69.19	0	1834991..1836181	-	396	115359584	-	Bamb_4839	-	putative AcnD-accessory protein PrpF
1615	 67.44	0	1836208..1838805	-	865	115359585	-	Bamb_4840	-	aconitate hydratase
1616	 65.22	0	1838882..1840054	-	390	115359586	-	Bamb_4841	-	methylcitrate synthase
1617	 66.22	0	1840177..1841070	-	297	115359587	prpB	Bamb_4842	-	2-methylisocitrate lyase
1618	 72.11	+1	1841241..1843223	+	660	115359588	-	Bamb_4843	-	sigma-54 dependent trancsriptional regulator
1619	 67.28	0	1843276..1843923	-	215	115359589	-	Bamb_4844	-	hypothetical protein
1620	 68.75	0	1844023..1844406	+	127	115359590	-	Bamb_4845	-	glyoxalase/bleomycin resistance protein/dioxygenase
1621	 67.14	0	1844602..1845450	-	282	115359591	-	Bamb_4846	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
1622	 67.22	0	1846032..1846934	+	300	115359592	-	Bamb_4847	-	IclR family transcriptional regulator
1623	 62.68	-1	1847023..1847574	+	183	115359593	-	Bamb_4848	-	hypothetical protein
1624	 69.33	0	1848275..1850716	-	813	115359594	-	Bamb_4849	-	GCN5-related N-acetyltransferase
1625	 61.62	-1	1851204..1851500	-	98	115359595	-	Bamb_4850	-	histone family protein nucleoid-structuring protein H-NS
1626	 58.86	-1	1851604..1851936	-	110	115359596	-	Bamb_4851	-	hypothetical protein
1627	 67.05	0	1851950..1852477	-	175	115359597	-	Bamb_4852	-	hypothetical protein
1628	 69.00	0	1852499..1854040	-	513	115359598	-	Bamb_4853	-	sigma-54 dependent trancsriptional regulator
1629	 66.10	0	1854367..1855770	+	467	115359599	-	Bamb_4854	-	citrate transporter
1630	 66.67	0	1856282..1856533	+	83	115359600	-	Bamb_4855	-	hypothetical protein
1631	 70.24	0	1856582..1858177	-	531	115359601	-	Bamb_4856	-	thioredoxin domain-containing protein
1632	 64.27	0	1858511..1859011	-	166	115359602	-	Bamb_4857	-	GCN5-related N-acetyltransferase
1633	 69.81	0	1859563..1861884	+	773	115359603	-	Bamb_4858	-	phospholipase C
1634	 68.15	0	1862123..1862392	+	89	115359604	-	Bamb_4859	-	hypothetical protein
1635	 69.69	0	1862556..1863548	+	330	115359605	-	Bamb_4860	-	rhodanese domain-containing protein
1636	 65.90	0	1863616..1865052	-	478	115359606	-	Bamb_4861	-	outer membrane porin
1637	 70.48	0	1865249..1866271	-	340	115359607	-	Bamb_4862	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1638	 69.39	0	1866268..1867260	-	330	115359608	-	Bamb_4863	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1639	 68.66	0	1867262..1868164	-	300	115359609	-	Bamb_4864	-	binding-protein-dependent transport systems inner membrane component
1640	 66.56	0	1868178..1869116	-	312	115359610	-	Bamb_4865	-	binding-protein-dependent transport systems inner membrane component
1641	 64.37	0	1869128..1870741	-	537	115359611	-	Bamb_4866	-	extracellular solute-binding protein
1642	 62.69	-1	1870919..1871497	-	192	115359612	-	Bamb_4867	-	XRE family transcriptional regulator
1643	 65.88	0	1871994..1873517	+	507	115359613	-	Bamb_4868	-	amino acid/peptide transporter
1644	 69.08	0	1873638..1873844	+	68	115359614	-	Bamb_4869	-	hypothetical protein
1645	 71.73	+1	1873900..1875024	-	374	115359615	-	Bamb_4870	-	hypothetical protein
1646	 71.44	+1	1875431..1876330	-	299	115359616	-	Bamb_4871	-	transporter DMT superfamily protein
1647	 67.30	0	1876343..1876660	-	105	115359617	-	Bamb_4872	-	acylphosphatase
1648	 69.74	0	1876852..1877859	+	335	115359618	-	Bamb_4873	-	NAD-dependent epimerase/dehydratase
1649	 72.17	+1	1877968..1879365	+	465	115359619	-	Bamb_4874	-	hypothetical protein
1650	 70.96	0	1879474..1880661	-	395	115359620	-	Bamb_4875	-	glycosyl transferase family protein
1651	 66.24	0	1881094..1882035	+	313	115359621	ispH	Bamb_4876	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1652	 62.45	-1	1882048..1883208	+	386	115359622	-	Bamb_4877	-	radical SAM domain-containing protein
1653	 64.37	0	1883366..1883626	-	86	115359623	-	Bamb_4878	-	hypothetical protein
1654	 69.79	0	1883808..1884287	-	159	115359624	-	Bamb_4879	-	hypothetical protein
1655	 67.20	0	1884511..1884885	-	124	115359625	-	Bamb_4880	-	hypothetical protein
1656	 64.69	0	1885379..1885732	+	117	115359626	-	Bamb_4881	-	aromatic ring-cleaving dioxygenase-like protein
1657	 66.90	0	1885841..1886272	+	143	115359627	-	Bamb_4882	-	hypothetical protein
1658	 65.22	0	1886306..1886926	-	206	115359628	-	Bamb_4883	-	hemolysin III family channel protein
1659	 66.57	0	1887361..1889439	-	692	115359629	-	Bamb_4884	-	carbon starvation protein CstA
1660	 66.20	0	1889738..1890166	-	142	115359630	-	Bamb_4885	-	PRC-barrel domain-containing protein
1661	 68.35	0	1890599..1891729	-	376	115359631	-	Bamb_4886	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1662	 67.85	0	1891868..1892545	+	225	115359632	-	Bamb_4887	-	hypothetical protein
1663	 60.28	-1	1892574..1892996	+	140	115359633	-	Bamb_4888	-	hypothetical protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.