IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1490	 66.85	0	1704378..1705985	-	535	115359460	-	Bamb_4714	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1491	 68.67	0	1706196..1707740	-	514	115359461	-	Bamb_4715	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1492	 70.29	0	1708109..1708633	+	174	115359462	-	Bamb_4716	-	hypothetical protein
1493	 69.21	0	1708737..1709957	-	406	115359463	-	Bamb_4717	-	beta-ketoadipyl CoA thiolase
1494	 67.27	0	1710128..1710955	+	275	115359464	-	Bamb_4718	-	IclR family transcriptional regulator
1495	 73.96	+1	1711223..1711318	-	31	115359465	-	Bamb_4719	-	succinylglutamate desuccinylase/aspartoacylase
1496	 68.47	0	1711487..1712818	-	443	115359466	-	Bamb_4720	-	major facilitator transporter
1497	 68.51	0	1712882..1714072	-	396	115359467	-	Bamb_4721	-	amidohydrolase
1498	 64.43	0	1714447..1715517	-	356	115359468	-	Bamb_4722	-	NADH:flavin oxidoreductase/NADH oxidase
1499	 61.11	-1	1715573..1716148	-	191	115359469	-	Bamb_4723	-	isochorismatase hydrolase
1500	 62.92	0	1716179..1717033	-	284	115359470	-	Bamb_4724	-	pirin domain-containing protein
1501	 59.98	-1	1717254..1718135	+	293	115359471	-	Bamb_4725	-	LysR family transcriptional regulator
1502	 64.50	0	1718841..1720457	+	538	115359472	-	Bamb_4726	-	tryptophan halogenase
1503	 70.90	0	1720457..1721542	+	361	115359473	-	Bamb_4727	-	prnB; PrnB
1504	 64.32	0	1721587..1723287	+	566	115359474	-	Bamb_4728	-	FAD dependent oxidoreductase
1505	 67.57	0	1723312..1724424	+	370	115359475	-	Bamb_4729	-	Rieske (2Fe-2S) domain-containing protein
1506	 57.69	-2	1724476..1725522	-	348	115359476	-	Bamb_4730	-	alcohol dehydrogenase
1507	 61.11	-1	1725544..1726407	-	287	115359477	-	Bamb_4731	-	alpha/beta hydrolase fold
1508	 63.95	0	1726555..1727805	-	416	115359478	-	Bamb_4732	-	NADH:flavin oxidoreductase/NADH oxidase
1509	 59.40	-1	1727812..1728210	-	132	115359479	-	Bamb_4733	-	hypothetical protein
1510	 61.07	-1	1728265..1729122	-	285	115359480	-	Bamb_4734	-	alpha/beta hydrolase fold
1511	 65.53	0	1729151..1729939	-	262	115359481	-	Bamb_4735	-	short-chain dehydrogenase/reductase SDR
1512	 65.19	0	1729997..1731079	-	360	115359482	-	Bamb_4736	-	NADH:flavin oxidoreductase/NADH oxidase
1513	 66.19	0	1731211..1731840	+	209	115359483	-	Bamb_4737	-	TetR family transcriptional regulator
1514	 63.08	0	1731919..1732839	-	306	115359484	-	Bamb_4738	-	LysR family transcriptional regulator
1515	 65.72	0	1732950..1733687	+	245	115359485	-	Bamb_4739	-	short-chain dehydrogenase/reductase SDR
1516	 63.72	0	1733742..1734827	+	361	115359486	-	Bamb_4740	-	NADH:flavin oxidoreductase/NADH oxidase
1517	 63.95	0	1734911..1735168	-	85	115359487	-	Bamb_4741	-	hypothetical protein
1518	 61.29	-1	1735190..1736026	+	278	115359488	-	Bamb_4742	-	alpha/beta hydrolase fold
1519	 67.92	0	1736335..1736973	+	212	115359489	-	Bamb_4743	-	TetR family transcriptional regulator
1520	 70.63	0	1737019..1738002	+	327	115359490	-	Bamb_4744	-	alcohol dehydrogenase
1521	 63.90	0	1738082..1738660	+	192	115359491	-	Bamb_4745	-	uncharacterized peroxidase-related enzyme
1522	 70.98	0	1738780..1739661	-	293	115359492	-	Bamb_4746	-	short-chain dehydrogenase/reductase SDR
1523	 71.50	+1	1739835..1740413	-	192	115359493	-	Bamb_4747	-	TetR family transcriptional regulator
1524	 67.28	0	1740617..1742092	+	491	115359494	-	Bamb_4748	-	glucose-6-phosphate 1-dehydrogenase
1525	 68.78	0	1742215..1743159	-	314	115359495	-	Bamb_4749	-	LysR family transcriptional regulator
1526	 70.41	0	1743270..1744472	+	400	115359496	-	Bamb_4750	-	major facilitator transporter
1527	 66.67	0	1744502..1744825	+	107	115359497	-	Bamb_4751	-	hypothetical protein
1528	 70.77	0	1744842..1745792	+	316	115359498	-	Bamb_4752	-	luciferase family protein
1529	 66.42	0	1745926..1746732	+	268	115359499	dkgB	Bamb_4753	-	2,5-diketo-D-gluconate reductase B
1530	 70.16	0	1746798..1747913	+	371	115359500	-	Bamb_4754	-	NADH:flavin oxidoreductase/NADH oxidase
1531	 70.45	0	1747945..1748949	+	334	115359501	-	Bamb_4755	-	aldo/keto reductase
1532	 72.07	+1	1749139..1749675	+	178	115359502	-	Bamb_4756	-	hypothetical protein
1533	 65.29	0	1749781..1750506	-	241	115359503	-	Bamb_4757	-	O-methyltransferase family protein
1534	 67.93	0	1750540..1751172	+	210	115359504	-	Bamb_4758	-	TetR family transcriptional regulator
1535	 68.39	0	1751676..1753064	+	462	115359505	-	Bamb_4759	-	xanthine/uracil/vitamin C permease
1536	 68.79	0	1753237..1753896	+	219	115359506	-	Bamb_4760	-	hypothetical protein
1537	 68.41	0	1753901..1754302	-	133	115359507	-	Bamb_4761	-	hypothetical protein
1538	 67.64	0	1754299..1754607	-	102	115359508	-	Bamb_4762	-	hypothetical protein
1539	 72.57	+1	1754716..1755663	+	315	115359509	-	Bamb_4763	-	AraC family transcriptional regulator
1540	 70.03	0	1755717..1756637	+	306	115359510	-	Bamb_4764	-	LysR family transcriptional regulator
1541	 63.09	0	1756864..1757646	+	260	115359511	-	Bamb_4765	-	cationic amino acid ABC transporter, periplasmic binding protein
1542	 68.01	0	1757905..1759020	+	371	115359512	-	Bamb_4766	-	succinylglutamate desuccinylase/aspartoacylase
1543	 66.54	0	1759190..1759996	-	268	115359513	-	Bamb_4767	-	YaeC family lipoprotein
1544	 64.76	0	1760305..1761459	+	384	115359514	-	Bamb_4768	-	porin
1545	 67.43	0	1761668..1761928	+	86	115359515	-	Bamb_4769	-	hypothetical protein
1546	 68.49	0	1762052..1762435	+	127	115359516	-	Bamb_4770	-	hypothetical protein
1547	 65.35	0	1762507..1762734	+	75	115359517	-	Bamb_4771	-	hypothetical protein
1548	 67.58	0	1762968..1765277	+	769	115359518	-	Bamb_4772	-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor
1549	 69.23	0	1765327..1766418	+	363	115359519	-	Bamb_4773	-	hemin-degrading family protein
1550	 75.58	+2	1766415..1767323	+	302	115359520	-	Bamb_4774	-	periplasmic binding protein
1551	 74.41	+1	1767339..1768436	+	365	115359521	-	Bamb_4775	-	transport system permease protein
1552	 69.59	0	1768456..1769277	+	273	115359522	-	Bamb_4776	-	hemin importer ATP-binding subunit
1553	 63.54	0	1769375..1769758	+	127	115359523	-	Bamb_4777	-	hypothetical protein
1554	 67.65	0	1769790..1770401	-	203	115359524	-	Bamb_4778	-	hypothetical protein
1555	 70.87	0	1770410..1772527	-	705	115359525	-	Bamb_4779	-	1A family penicillin-binding protein
1556	 70.47	0	1772671..1773537	+	288	115359526	-	Bamb_4780	-	aminoglycoside/hydroxyurea antibiotic resistance kinase
1557	 58.09	-2	1773757..1774269	+	170	115359527	-	Bamb_4781	-	hypothetical protein
1558	 52.12	-2	1775377..1775706	+	109	115359528	-	Bamb_4783	-	hypothetical protein
1559	 49.77	-2	1776714..1777376	+	220	115359529	-	Bamb_4784	-	hypothetical protein
1560	 50.48	-2	1777709..1778437	+	242	115359530	-	Bamb_4785	-	hypothetical protein
1561	 49.90	-2	1778997..1780004	+	335	115359531	-	Bamb_4786	-	hypothetical protein
1562	 64.16	0	1780977..1781813	-	278	115359532	-	Bamb_4787	-	hypothetical protein
1563	 74.20	+1	1782477..1782914	-	145	115359533	-	Bamb_4788	-	17 kDa surface antigen
1564	 68.03	0	1783283..1783942	-	219	115359534	-	Bamb_4789	-	isoprenylcysteine carboxyl methyltransferase
1565	 64.85	0	1784118..1784282	-	54	115359535	-	Bamb_4790	-	hypothetical protein
1566	 69.05	0	1784515..1784934	-	139	115359536	-	Bamb_4791	-	histidine triad (HIT) protein
1567	 70.23	0	1785199..1786602	+	467	115359537	-	Bamb_4792	-	beta-lactamase
1568	 66.51	0	1786677..1787300	-	207	115359538	-	Bamb_4793	-	glutathione S-transferase domain-containing protein
1569	 66.03	0	1787441..1787911	-	156	115359539	-	Bamb_4794	-	integral membrane protein-like protein
1570	 71.29	+1	1787908..1789161	-	417	115359540	-	Bamb_4795	-	NAD-dependent epimerase/dehydratase
1571	 64.79	0	1789303..1789836	-	177	115359541	-	Bamb_4796	-	transcriptional regulators-like protein
1572	 63.92	0	1790042..1791244	+	400	115359542	-	Bamb_4797	-	trans-2-enoyl-CoA reductase
1573	 70.50	0	1791299..1792003	-	234	115359543	-	Bamb_4798	-	short chain dehydrogenase
1574	 70.92	0	1792300..1792887	+	195	115359544	-	Bamb_4799	-	TetR family transcriptional regulator
1575	 69.60	0	1792919..1793497	-	192	115359545	-	Bamb_4800	-	hypothetical protein
1576	 69.49	0	1793646..1794176	-	176	115359546	-	Bamb_4801	-	GCN5-related N-acetyltransferase
1577	 69.55	0	1794383..1794868	+	161	115359547	-	Bamb_4802	-	activator of Hsp90 ATPase 1 family protein
1578	 69.18	0	1794990..1795466	+	158	115359548	-	Bamb_4803	-	activator of Hsp90 ATPase 1 family protein
1579	 66.31	0	1795492..1796616	-	374	115359549	-	Bamb_4804	-	amidohydrolase 2
1580	 68.50	0	1796618..1797925	-	435	115359550	-	Bamb_4805	-	major facilitator transporter
1581	 68.95	0	1798017..1799330	-	437	115359551	-	Bamb_4806	-	L-carnitine dehydratase/bile acid-inducible protein F
1582	 70.62	0	1799327..1800313	-	328	115359552	-	Bamb_4807	-	pyruvate carboxyltransferase
1583	 71.29	+1	1800488..1801309	+	273	115359553	-	Bamb_4808	-	IclR family transcriptional regulator
1584	 68.54	0	1801462..1802100	+	212	115359554	-	Bamb_4809	-	DSBA oxidoreductase
1585	 70.53	0	1802119..1803102	-	327	115359555	-	Bamb_4810	-	LysR family transcriptional regulator
1586	 74.05	+1	1803203..1804435	+	410	115359556	-	Bamb_4811	-	major facilitator transporter
1587	 65.01	0	1804832..1805557	+	241	115359557	-	Bamb_4812	-	phosphoesterase, PA-phosphatase related
1588	 67.12	0	1805694..1806353	-	219	115359558	-	Bamb_4813	-	glutathione S-transferase domain-containing protein
1589	 71.62	+1	1806480..1807550	-	356	115359559	-	Bamb_4814	-	beta-lactamase domain-containing protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.