IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1363	 67.54	0	1548926..1550533	-	535	115359333	-	Bamb_4587	-	propionyl-CoA carboxylase
1364	 65.40	0	1550565..1551746	-	393	115359334	-	Bamb_4588	-	acyl-CoA dehydrogenase domain-containing protein
1365	 69.08	0	1551918..1552664	+	248	115359335	-	Bamb_4589	-	TetR family transcriptional regulator
1366	 65.95	0	1552737..1553294	-	185	115359336	-	Bamb_4590	-	MarR family transcriptional regulator
1367	 67.29	0	1553381..1554502	+	373	115359337	-	Bamb_4591	-	vanillate monooxygenase
1368	 68.32	0	1554499..1555464	+	321	115359338	-	Bamb_4592	-	ferredoxin
1369	 65.91	0	1555513..1556574	+	353	115359339	-	Bamb_4593	-	Rieske (2Fe-2S) domain-containing protein
1370	 69.64	0	1556705..1558048	+	447	115359340	-	Bamb_4594	-	major facilitator transporter
1371	 68.04	0	1558153..1559247	+	364	115359341	-	Bamb_4595	-	outer membrane protein (porin)
1372	 66.89	0	1559309..1559755	-	148	115359342	-	Bamb_4596	-	hypothetical protein
1373	 68.55	0	1560143..1562320	+	725	115359343	-	Bamb_4597	-	TonB-dependent siderophore receptor
1374	 68.51	0	1562399..1563430	-	343	115359344	-	Bamb_4598	-	putative dehydrogenase
1375	 69.07	0	1563460..1564668	-	402	115359345	-	Bamb_4599	-	mandelate racemase/muconate lactonizing protein
1376	 68.02	0	1564697..1565434	-	245	115359346	-	Bamb_4600	-	GntR family transcriptional regulator
1377	 71.93	+1	1565591..1567054	+	487	115359347	-	Bamb_4601	-	mannitol dehydrogenase domain-containing protein
1378	 69.06	0	1567191..1568483	+	430	115359348	-	Bamb_4602	-	major facilitator transporter
1379	 68.69	0	1568700..1569491	+	263	115359349	-	Bamb_4603	-	hypothetical protein
1380	 67.61	0	1569500..1570564	+	354	115359350	-	Bamb_4604	-	ABC transporter, periplasmic ligand binding protein
1381	 73.94	+1	1570611..1571297	+	228	115359351	-	Bamb_4605	-	cytochrome c, class I
1382	 70.54	0	1571294..1572223	+	309	115359352	-	Bamb_4606	-	cytochrome c, class I
1383	 65.78	0	1572249..1574171	-	640	115359353	-	Bamb_4607	-	hypothetical protein
1384	 67.84	0	1574700..1575893	-	397	115359354	-	Bamb_4608	-	porin
1385	 65.92	0	1575929..1576195	-	88	115359355	-	Bamb_4609	-	hypothetical protein
1386	 69.35	0	1576210..1576842	+	210	115359356	-	Bamb_4610	-	lysine exporter protein LysE/YggA
1387	 68.72	0	1576885..1577421	+	178	115359357	-	Bamb_4611	-	GCN5-related N-acetyltransferase
1388	 69.12	0	1577537..1578271	+	244	115359358	-	Bamb_4612	-	metallophosphoesterase
1389	 71.58	+1	1578518..1579840	-	440	115359359	-	Bamb_4613	-	periplasmic sensor signal transduction histidine kinase
1390	 68.96	0	1579837..1580577	-	246	115359360	-	Bamb_4614	-	two component transcriptional regulator
1391	 66.33	0	1580806..1581399	+	197	115359361	-	Bamb_4615	-	redoxin domain-containing protein
1392	 68.86	0	1581446..1582084	-	212	115359362	-	Bamb_4616	-	negative transcriptional regulator
1393	 72.79	+1	1582213..1583763	+	516	115359363	-	Bamb_4617	-	GntR family transcriptional regulator
1394	 69.59	0	1583872..1586058	+	728	115359364	-	Bamb_4618	-	glycosyl transferase family protein
1395	 69.44	0	1586080..1587990	-	636	115359365	-	Bamb_4619	-	hypothetical protein
1396	 69.50	0	1588071..1588493	-	140	115359366	-	Bamb_4620	-	hypothetical protein
1397	 66.94	0	1588772..1589872	-	366	115359367	-	Bamb_4621	-	adenosine deaminase
1398	 68.89	0	1589919..1591268	-	449	115359368	-	Bamb_4622	-	xanthine/uracil/vitamin C permease
1399	 70.39	0	1591362..1592273	+	303	115359369	-	Bamb_4623	-	LysR family transcriptional regulator
1400	 71.13	+1	1592316..1593368	-	350	115359370	-	Bamb_4624	-	inosine/uridine-preferring nucleoside hydrolase
1401	 63.97	0	1593379..1594491	-	370	115359371	-	Bamb_4625	-	porin
1402	 69.06	0	1594655..1596157	-	500	115359372	-	Bamb_4626	-	hypothetical protein
1403	 66.60	0	1596442..1597869	-	475	115359373	-	Bamb_4627	-	major facilitator transporter
1404	 63.08	0	1597940..1598329	-	129	115359374	-	Bamb_4628	-	hypothetical protein
1405	 68.11	0	1598333..1600831	+	832	115359375	-	Bamb_4629	-	MscS mechanosensitive ion channel
1406	 67.79	0	1600929..1602440	-	503	115359376	-	Bamb_4630	-	aldehyde dehydrogenase
1407	 66.67	0	1603075..1604655	+	526	115359377	-	Bamb_4631	-	amino acid permease-associated region
1408	 71.63	+1	1604818..1606086	+	422	115359378	-	Bamb_4632	-	FAD dependent oxidoreductase
1409	 64.00	0	1606205..1606879	+	224	115359379	-	Bamb_4633	-	TetR family transcriptional regulator
1410	 69.30	0	1607008..1608789	-	593	115359380	-	Bamb_4634	-	phospholipase D/transphosphatidylase
1411	 70.16	0	1608901..1609701	-	266	115359381	-	Bamb_4635	-	DeoR family transcriptional regulator
1412	 63.44	0	1609865..1610050	+	61	115359382	-	Bamb_4636	-	hypothetical protein
1413	 72.87	+1	1610413..1611282	+	289	115359383	-	Bamb_4637	-	hypothetical protein
1414	 68.24	0	1611461..1612348	+	295	115359384	nadE	Bamb_4638	-	NAD synthetase
1415	 65.12	0	1612421..1614097	-	558	115359385	-	Bamb_4639	-	peptidase S10, serine carboxypeptidase
1416	 70.44	0	1614171..1615760	-	529	115359386	-	Bamb_4640	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1417	 68.43	0	1616043..1616666	-	207	115359387	-	Bamb_4641	-	lysine exporter protein LysE/YggA
1418	 68.17	0	1616801..1617265	+	154	115359388	-	Bamb_4642	-	AsnC family transcriptional regulator
1419	 69.08	0	1617391..1618302	-	303	115359389	-	Bamb_4643	-	LysR family transcriptional regulator
1420	 67.68	0	1618406..1619395	+	329	115359390	-	Bamb_4644	-	putative agmatinase
1421	 67.72	0	1619449..1620774	+	441	115359391	-	Bamb_4645	-	major facilitator transporter
1422	 66.06	0	1620886..1623180	-	764	115359392	-	Bamb_4646	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1423	 66.23	0	1623309..1624217	+	302	115359393	-	Bamb_4647	-	LysR family transcriptional regulator
1424	 67.08	0	1624240..1624959	-	239	115359394	-	Bamb_4648	-	hypothetical protein
1425	 65.24	0	1624973..1625182	-	69	115359395	-	Bamb_4649	-	hypothetical protein
1426	 71.77	+1	1625402..1625989	+	195	115359396	-	Bamb_4650	-	phosphoglycerate mutase
1427	 66.16	0	1626129..1627721	+	530	115359397	-	Bamb_4651	-	phosphate transporter
1428	 58.18	-2	1627804..1628121	-	105	115359398	-	Bamb_4652	-	transposase mutator family protein
1429	 65.28	0	1628527..1629318	+	263	115359399	-	Bamb_4653	-	hypothetical protein
1430	 65.68	0	1629886..1631310	-	474	115359400	-	Bamb_4654	-	EmrB/QacA family drug resistance transporter
1431	 65.94	0	1637826..1638377	-	183	115359401	-	Bamb_4655	-	HD phosphohydrolase-like protein
1432	 66.39	0	1638382..1639836	-	484	115359402	-	Bamb_4656	-	aldehyde dehydrogenase
1433	 69.87	0	1639833..1641143	-	436	115359403	-	Bamb_4657	-	phosphonoacetate hydrolase
1434	 72.24	+1	1641140..1642000	-	286	115359404	-	Bamb_4658	-	binding-protein-dependent transport systems inner membrane component
1435	 69.82	0	1641990..1642910	-	306	115359405	-	Bamb_4659	-	binding-protein-dependent transport systems inner membrane component
1436	 70.74	0	1642888..1643991	-	367	115359406	-	Bamb_4660	-	ABC transporter related
1437	 64.55	0	1644026..1645114	-	362	115359407	-	Bamb_4661	-	ABC transporter periplasmic-binding protein
1438	 69.73	0	1645368..1646477	+	369	115359408	-	Bamb_4662	-	2-aminoethylphosphonate--pyruvate transaminase
1439	 66.08	0	1646580..1647947	-	455	115359409	-	Bamb_4663	-	major facilitator transporter
1440	 69.36	0	1647982..1648836	-	284	115359410	-	Bamb_4664	-	shikimate 5-dehydrogenase
1441	 65.79	0	1648833..1649288	-	151	115359411	-	Bamb_4665	-	3-dehydroquinate dehydratase
1442	 68.89	0	1649545..1651437	+	630	115359412	-	Bamb_4666	-	4-hydroxyphenylpyruvate dioxygenase
1443	 66.29	0	1651724..1651987	+	87	115359413	-	Bamb_4667	-	hypothetical protein
1444	 66.29	0	1652063..1652857	-	264	115359414	-	Bamb_4668	-	AraC family transcriptional regulator
1445	 66.05	0	1653478..1654614	+	378	115359415	-	Bamb_4669	-	extracellular ligand-binding receptor
1446	 67.66	0	1654935..1656245	+	436	115359416	-	Bamb_4670	-	major facilitator transporter
1447	 64.38	0	1656377..1656814	-	145	115359417	-	Bamb_4671	-	DoxX family protein
1448	 69.08	0	1657039..1657494	-	151	115359418	-	Bamb_4672	-	RbsD or FucU transport
1449	 67.94	0	1657574..1657966	-	130	115359419	-	Bamb_4673	-	hypothetical protein
1450	 70.58	0	1658139..1658624	+	161	115359420	-	Bamb_4674	-	hypothetical protein
1451	 69.18	0	1658693..1660246	-	517	115359421	-	Bamb_4675	-	galactarate dehydratase
1452	 66.12	0	1660485..1661399	+	304	115359422	-	Bamb_4676	-	5-dehydro-4-deoxyglucarate dehydratase
1453	 66.49	0	1661535..1662086	-	183	115359423	-	Bamb_4677	-	hypothetical protein
1454	 63.29	0	1662224..1662460	+	78	115359424	-	Bamb_4678	-	hypothetical protein
1455	 71.93	+1	1662619..1664196	-	525	115359425	-	Bamb_4679	-	aldehyde dehydrogenase
1456	 66.80	0	1664391..1665848	+	485	115359426	-	Bamb_4680	-	d-galactonate transporter
1457	 67.91	0	1665910..1666635	-	241	115359427	-	Bamb_4681	-	peptidase M50
1458	 68.45	0	1666632..1667585	-	317	115359428	-	Bamb_4682	-	uncharacterized membrane-anchored protein
1459	 71.50	+1	1667841..1668689	+	282	115359429	-	Bamb_4683	-	XRE family transcriptional regulator
1460	 71.45	+1	1668708..1669919	-	403	115359430	-	Bamb_4684	-	acyl-CoA dehydrogenase type 2
1461	 67.02	0	1669916..1670773	-	285	115359431	-	Bamb_4685	-	hypothetical protein
1462	 69.25	0	1670830..1671486	-	218	115359432	-	Bamb_4686	-	binding-protein-dependent transport systems inner membrane component
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.