IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1309	 63.39	0	1486565..1486900	+	111	115359279	-	Bamb_4533	-	hypothetical protein
1310	 68.92	0	1486917..1487849	-	310	115359280	-	Bamb_4534	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1311	 65.69	0	1488016..1488936	+	306	115359281	-	Bamb_4535	-	substrate-binding region of ABC-type glycine betaine transport system
1312	 72.01	+1	1488933..1490111	+	392	115359282	-	Bamb_4536	-	binding-protein-dependent transport systems inner membrane component
1313	 70.50	0	1490108..1491046	+	312	115359283	-	Bamb_4537	-	ABC transporter related
1314	 72.40	+1	1491043..1491810	+	255	115359284	-	Bamb_4538	-	binding-protein-dependent transport systems inner membrane component
1315	 66.37	0	1492030..1492704	+	224	115359285	-	Bamb_4539	-	lytic transglycosylase, catalytic
1316	 63.56	0	1492900..1494252	-	450	115359286	-	Bamb_4540	-	HipA domain-containing protein
1317	 67.28	0	1494252..1494578	-	108	115359287	-	Bamb_4541	-	XRE family transcriptional regulator
1318	 69.35	0	1494822..1495268	-	148	115359288	-	Bamb_4542	-	dihydroneopterin aldolase
1319	 68.57	0	1495265..1495894	-	209	115359289	-	Bamb_4543	-	sarcosine oxidase, gamma subunit
1320	 67.23	0	1495884..1498895	-	1003	115359290	-	Bamb_4544	-	sarcosine oxidase alpha subunit family protein
1321	 64.74	0	1498892..1499203	-	103	115359291	-	Bamb_4545	-	sarcosine oxidase, delta subunit, heterotetrameric
1322	 65.62	0	1499229..1500473	-	414	115359292	-	Bamb_4546	-	sarcosine oxidase beta subunit family protein
1323	 66.67	0	1500489..1501874	-	461	115359293	-	Bamb_4547	-	L-serine dehydratase 1
1324	 68.99	0	1502137..1503210	+	357	115359294	-	Bamb_4548	-	AraC family transcriptional regulator
1325	 69.08	0	1503416..1504120	+	234	115359295	-	Bamb_4549	-	GntR domain-containing protein
1326	 70.37	0	1504191..1505081	+	296	115359296	-	Bamb_4550	-	3-hydroxyisobutyrate dehydrogenase
1327	 70.52	0	1505101..1506399	+	432	115359297	-	Bamb_4551	-	type III effector Hrp-dependent outers
1328	 70.25	0	1506396..1507037	+	213	115359298	-	Bamb_4552	-	putative aldolase
1329	 65.01	0	1507177..1508502	+	441	115359299	-	Bamb_4553	-	major facilitator transporter
1330	 67.82	0	1508567..1509343	+	258	115359300	-	Bamb_4554	-	hydroxypyruvate isomerase
1331	 69.03	0	1509372..1510343	+	323	115359301	-	Bamb_4555	-	NAD-dependent epimerase/dehydratase
1332	 70.59	0	1510340..1510594	+	84	115359302	-	Bamb_4556	-	hypothetical protein
1333	 64.52	0	1510569..1510847	-	92	115359303	-	Bamb_4557	-	hypothetical protein
1334	 68.99	0	1510919..1511263	-	114	115359304	-	Bamb_4558	-	hypothetical protein
1335	 67.25	0	1511468..1512157	+	229	115359305	-	Bamb_4559	-	aspartyl/asparaginyl beta-hydroxylase
1336	 67.52	0	1512186..1513127	-	313	115359306	-	Bamb_4560	-	LysR family transcriptional regulator
1337	 60.90	-1	1513204..1513602	+	132	115359307	-	Bamb_4561	-	hypothetical protein
1338	 66.67	0	1513744..1514013	+	89	115359308	-	Bamb_4562	-	thiamineS protein
1339	 69.89	0	1514067..1515215	+	382	115359309	-	Bamb_4563	-	glycosyl hydrolase
1340	 63.50	0	1515317..1516264	-	315	115359310	-	Bamb_4564	-	substrate-binding region of ABC-type glycine betaine transport system
1341	 66.57	0	1516375..1517373	-	332	115359311	-	Bamb_4565	-	AraC family transcriptional regulator
1342	 64.77	0	1517492..1518388	-	298	115359312	-	Bamb_4566	-	binding-protein-dependent transport systems inner membrane component
1343	 65.98	0	1518381..1519550	-	389	115359313	-	Bamb_4567	-	glycine betaine/L-proline ABC transporter, ATPase subunit
1344	 70.94	0	1520164..1523583	+	1139	115359314	-	Bamb_4568	-	membrane protein-like protein
1345	 73.17	+1	1523580..1524917	+	445	115359315	-	Bamb_4569	-	hypothetical protein
1346	 71.74	+1	1525075..1525863	-	262	115359316	-	Bamb_4570	-	GCN5-related N-acetyltransferase
1347	 61.11	-1	1526122..1526427	+	101	115359317	-	Bamb_4571	-	NIPSNAP family protein
1348	 67.60	0	1526521..1527378	+	285	115359318	-	Bamb_4572	-	NADPH-dependent FMN reductase
1349	 67.12	0	1527601..1527819	+	72	115359319	-	Bamb_4573	-	hypothetical protein
1350	 66.78	0	1527911..1528813	+	300	115359320	-	Bamb_4574	-	hypothetical protein
1351	 65.13	0	1529890..1537371	+	2493	115359321	-	Bamb_4575	-	hemagluttinin domain-containing protein
1352	 70.52	0	1537495..1538169	+	224	115359322	-	Bamb_4576	-	OmpA/MotB domain-containing protein
1353	 64.73	0	1538488..1539675	+	395	115359323	-	Bamb_4577	-	hypothetical protein
1354	 62.68	-1	1539690..1540844	+	384	115359324	-	Bamb_4578	-	hypothetical protein
1355	 67.74	0	1540877..1541344	+	155	115359325	-	Bamb_4579	-	hypothetical protein
1356	 70.69	0	1541549..1541995	-	148	115359326	-	Bamb_4580	-	hypothetical protein
1357	 68.53	0	1542058..1542861	-	267	115359327	-	Bamb_4581	-	diguanylate phosphodiesterase
1358	 64.48	0	1543594..1544736	-	380	115359328	-	Bamb_4582	-	hypothetical protein
1359	 52.45	-2	1544887..1545315	-	142	115359329	-	Bamb_4583	-	hypothetical protein
1360	 55.14	-2	1545646..1545888	+	80	115359330	-	Bamb_4584	-	hypothetical protein
1361	 70.16	0	1546084..1548084	-	666	115359331	-	Bamb_4585	-	carbamoyl-phosphate synthase L chain, ATP-binding
1362	 71.63	+1	1548121..1548906	-	261	115359332	-	Bamb_4586	-	enoyl-CoA hydratase
1363	 67.54	0	1548926..1550533	-	535	115359333	-	Bamb_4587	-	propionyl-CoA carboxylase
1364	 65.40	0	1550565..1551746	-	393	115359334	-	Bamb_4588	-	acyl-CoA dehydrogenase domain-containing protein
1365	 69.08	0	1551918..1552664	+	248	115359335	-	Bamb_4589	-	TetR family transcriptional regulator
1366	 65.95	0	1552737..1553294	-	185	115359336	-	Bamb_4590	-	MarR family transcriptional regulator
1367	 67.29	0	1553381..1554502	+	373	115359337	-	Bamb_4591	-	vanillate monooxygenase
1368	 68.32	0	1554499..1555464	+	321	115359338	-	Bamb_4592	-	ferredoxin
1369	 65.91	0	1555513..1556574	+	353	115359339	-	Bamb_4593	-	Rieske (2Fe-2S) domain-containing protein
1370	 69.64	0	1556705..1558048	+	447	115359340	-	Bamb_4594	-	major facilitator transporter
1371	 68.04	0	1558153..1559247	+	364	115359341	-	Bamb_4595	-	outer membrane protein (porin)
1372	 66.89	0	1559309..1559755	-	148	115359342	-	Bamb_4596	-	hypothetical protein
1373	 68.55	0	1560143..1562320	+	725	115359343	-	Bamb_4597	-	TonB-dependent siderophore receptor
1374	 68.51	0	1562399..1563430	-	343	115359344	-	Bamb_4598	-	putative dehydrogenase
1375	 69.07	0	1563460..1564668	-	402	115359345	-	Bamb_4599	-	mandelate racemase/muconate lactonizing protein
1376	 68.02	0	1564697..1565434	-	245	115359346	-	Bamb_4600	-	GntR family transcriptional regulator
1377	 71.93	+1	1565591..1567054	+	487	115359347	-	Bamb_4601	-	mannitol dehydrogenase domain-containing protein
1378	 69.06	0	1567191..1568483	+	430	115359348	-	Bamb_4602	-	major facilitator transporter
1379	 68.69	0	1568700..1569491	+	263	115359349	-	Bamb_4603	-	hypothetical protein
1380	 67.61	0	1569500..1570564	+	354	115359350	-	Bamb_4604	-	ABC transporter, periplasmic ligand binding protein
1381	 73.94	+1	1570611..1571297	+	228	115359351	-	Bamb_4605	-	cytochrome c, class I
1382	 70.54	0	1571294..1572223	+	309	115359352	-	Bamb_4606	-	cytochrome c, class I
1383	 65.78	0	1572249..1574171	-	640	115359353	-	Bamb_4607	-	hypothetical protein
1384	 67.84	0	1574700..1575893	-	397	115359354	-	Bamb_4608	-	porin
1385	 65.92	0	1575929..1576195	-	88	115359355	-	Bamb_4609	-	hypothetical protein
1386	 69.35	0	1576210..1576842	+	210	115359356	-	Bamb_4610	-	lysine exporter protein LysE/YggA
1387	 68.72	0	1576885..1577421	+	178	115359357	-	Bamb_4611	-	GCN5-related N-acetyltransferase
1388	 69.12	0	1577537..1578271	+	244	115359358	-	Bamb_4612	-	metallophosphoesterase
1389	 71.58	+1	1578518..1579840	-	440	115359359	-	Bamb_4613	-	periplasmic sensor signal transduction histidine kinase
1390	 68.96	0	1579837..1580577	-	246	115359360	-	Bamb_4614	-	two component transcriptional regulator
1391	 66.33	0	1580806..1581399	+	197	115359361	-	Bamb_4615	-	redoxin domain-containing protein
1392	 68.86	0	1581446..1582084	-	212	115359362	-	Bamb_4616	-	negative transcriptional regulator
1393	 72.79	+1	1582213..1583763	+	516	115359363	-	Bamb_4617	-	GntR family transcriptional regulator
1394	 69.59	0	1583872..1586058	+	728	115359364	-	Bamb_4618	-	glycosyl transferase family protein
1395	 69.44	0	1586080..1587990	-	636	115359365	-	Bamb_4619	-	hypothetical protein
1396	 69.50	0	1588071..1588493	-	140	115359366	-	Bamb_4620	-	hypothetical protein
1397	 66.94	0	1588772..1589872	-	366	115359367	-	Bamb_4621	-	adenosine deaminase
1398	 68.89	0	1589919..1591268	-	449	115359368	-	Bamb_4622	-	xanthine/uracil/vitamin C permease
1399	 70.39	0	1591362..1592273	+	303	115359369	-	Bamb_4623	-	LysR family transcriptional regulator
1400	 71.13	+1	1592316..1593368	-	350	115359370	-	Bamb_4624	-	inosine/uridine-preferring nucleoside hydrolase
1401	 63.97	0	1593379..1594491	-	370	115359371	-	Bamb_4625	-	porin
1402	 69.06	0	1594655..1596157	-	500	115359372	-	Bamb_4626	-	hypothetical protein
1403	 66.60	0	1596442..1597869	-	475	115359373	-	Bamb_4627	-	major facilitator transporter
1404	 63.08	0	1597940..1598329	-	129	115359374	-	Bamb_4628	-	hypothetical protein
1405	 68.11	0	1598333..1600831	+	832	115359375	-	Bamb_4629	-	MscS mechanosensitive ion channel
1406	 67.79	0	1600929..1602440	-	503	115359376	-	Bamb_4630	-	aldehyde dehydrogenase
1407	 66.67	0	1603075..1604655	+	526	115359377	-	Bamb_4631	-	amino acid permease-associated region
1408	 71.63	+1	1604818..1606086	+	422	115359378	-	Bamb_4632	-	FAD dependent oxidoreductase
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.