IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1283	 72.51	+1	1459171..1460454	-	427	115359253	-	Bamb_4507	-	glycosyl transferase family protein
1284	 68.25	0	1460474..1461043	-	189	115359254	-	Bamb_4508	-	isoprenylcysteine carboxyl methyltransferase
1285	 68.44	0	1461095..1461997	-	300	115359255	-	Bamb_4509	-	alpha/beta hydrolase fold
1286	 68.72	0	1462721..1463305	+	194	115359256	-	Bamb_4510	-	transcriptional regulator BetI
1287	 67.62	0	1463337..1464806	+	489	115359257	-	Bamb_4511	-	betaine aldehyde dehydrogenase
1288	 67.61	0	1464829..1466529	+	566	115359258	-	Bamb_4512	-	choline dehydrogenase
1289	 71.56	+1	1466611..1467735	-	374	115359259	-	Bamb_4513	-	hypothetical protein
1290	 64.68	0	1467966..1468469	-	167	115359260	-	Bamb_4514	-	hypothetical protein
1291	 65.21	0	1468593..1469417	-	274	115359261	-	Bamb_4515	-	OmpW family protein
1292	 68.26	0	1469492..1470745	-	417	115359262	-	Bamb_4516	-	hypothetical protein
1293	 65.73	0	1470817..1472415	-	532	115359263	-	Bamb_4517	-	hypothetical protein
1294	 70.18	0	1472415..1472699	-	94	115359264	-	Bamb_4518	-	hypothetical protein
1295	 53.25	-2	1472930..1473175	-	81	115359265	-	Bamb_4519	-	hypothetical protein
1296	 66.35	0	1473278..1474222	+	314	115359266	-	Bamb_4520	-	ABC transporter related
1297	 63.29	0	1474228..1474998	+	256	115359267	-	Bamb_4521	-	ABC-2 type transporter
1298	 67.94	0	1475167..1475871	+	234	115359268	-	Bamb_4522	-	beta-lactamase domain-containing protein
1299	 66.23	0	1475920..1476150	-	76	115359269	-	Bamb_4523	-	hypothetical protein
1300	 68.98	0	1476304..1478073	+	589	115359270	-	Bamb_4524	-	PAS/PAC sensor hybrid histidine kinase
1301	 63.19	0	1478332..1478763	+	143	115359271	-	Bamb_4525	-	DGPFAETKE family protein
1302	 68.29	0	1478973..1479833	+	286	115359272	-	Bamb_4526	-	putative esterase
1303	 68.90	0	1479949..1480887	+	312	115359273	-	Bamb_4527	-	LysR family transcriptional regulator
1304	 67.26	0	1480999..1482006	+	335	115359274	-	Bamb_4528	-	aldo/keto reductase
1305	 64.07	0	1482126..1482356	-	76	115359275	-	Bamb_4529	-	hypothetical protein
1306	 70.65	0	1482634..1483536	-	300	115359276	-	Bamb_4530	-	hypothetical protein
1307	 64.66	0	1483606..1483953	+	115	115359277	-	Bamb_4531	-	hypothetical protein
1308	 70.65	0	1484562..1486517	+	651	115359278	-	Bamb_4532	-	x-prolyl-dipeptidyl aminopeptidase
1309	 63.39	0	1486565..1486900	+	111	115359279	-	Bamb_4533	-	hypothetical protein
1310	 68.92	0	1486917..1487849	-	310	115359280	-	Bamb_4534	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1311	 65.69	0	1488016..1488936	+	306	115359281	-	Bamb_4535	-	substrate-binding region of ABC-type glycine betaine transport system
1312	 72.01	+1	1488933..1490111	+	392	115359282	-	Bamb_4536	-	binding-protein-dependent transport systems inner membrane component
1313	 70.50	0	1490108..1491046	+	312	115359283	-	Bamb_4537	-	ABC transporter related
1314	 72.40	+1	1491043..1491810	+	255	115359284	-	Bamb_4538	-	binding-protein-dependent transport systems inner membrane component
1315	 66.37	0	1492030..1492704	+	224	115359285	-	Bamb_4539	-	lytic transglycosylase, catalytic
1316	 63.56	0	1492900..1494252	-	450	115359286	-	Bamb_4540	-	HipA domain-containing protein
1317	 67.28	0	1494252..1494578	-	108	115359287	-	Bamb_4541	-	XRE family transcriptional regulator
1318	 69.35	0	1494822..1495268	-	148	115359288	-	Bamb_4542	-	dihydroneopterin aldolase
1319	 68.57	0	1495265..1495894	-	209	115359289	-	Bamb_4543	-	sarcosine oxidase, gamma subunit
1320	 67.23	0	1495884..1498895	-	1003	115359290	-	Bamb_4544	-	sarcosine oxidase alpha subunit family protein
1321	 64.74	0	1498892..1499203	-	103	115359291	-	Bamb_4545	-	sarcosine oxidase, delta subunit, heterotetrameric
1322	 65.62	0	1499229..1500473	-	414	115359292	-	Bamb_4546	-	sarcosine oxidase beta subunit family protein
1323	 66.67	0	1500489..1501874	-	461	115359293	-	Bamb_4547	-	L-serine dehydratase 1
1324	 68.99	0	1502137..1503210	+	357	115359294	-	Bamb_4548	-	AraC family transcriptional regulator
1325	 69.08	0	1503416..1504120	+	234	115359295	-	Bamb_4549	-	GntR domain-containing protein
1326	 70.37	0	1504191..1505081	+	296	115359296	-	Bamb_4550	-	3-hydroxyisobutyrate dehydrogenase
1327	 70.52	0	1505101..1506399	+	432	115359297	-	Bamb_4551	-	type III effector Hrp-dependent outers
1328	 70.25	0	1506396..1507037	+	213	115359298	-	Bamb_4552	-	putative aldolase
1329	 65.01	0	1507177..1508502	+	441	115359299	-	Bamb_4553	-	major facilitator transporter
1330	 67.82	0	1508567..1509343	+	258	115359300	-	Bamb_4554	-	hydroxypyruvate isomerase
1331	 69.03	0	1509372..1510343	+	323	115359301	-	Bamb_4555	-	NAD-dependent epimerase/dehydratase
1332	 70.59	0	1510340..1510594	+	84	115359302	-	Bamb_4556	-	hypothetical protein
1333	 64.52	0	1510569..1510847	-	92	115359303	-	Bamb_4557	-	hypothetical protein
1334	 68.99	0	1510919..1511263	-	114	115359304	-	Bamb_4558	-	hypothetical protein
1335	 67.25	0	1511468..1512157	+	229	115359305	-	Bamb_4559	-	aspartyl/asparaginyl beta-hydroxylase
1336	 67.52	0	1512186..1513127	-	313	115359306	-	Bamb_4560	-	LysR family transcriptional regulator
1337	 60.90	-1	1513204..1513602	+	132	115359307	-	Bamb_4561	-	hypothetical protein
1338	 66.67	0	1513744..1514013	+	89	115359308	-	Bamb_4562	-	thiamineS protein
1339	 69.89	0	1514067..1515215	+	382	115359309	-	Bamb_4563	-	glycosyl hydrolase
1340	 63.50	0	1515317..1516264	-	315	115359310	-	Bamb_4564	-	substrate-binding region of ABC-type glycine betaine transport system
1341	 66.57	0	1516375..1517373	-	332	115359311	-	Bamb_4565	-	AraC family transcriptional regulator
1342	 64.77	0	1517492..1518388	-	298	115359312	-	Bamb_4566	-	binding-protein-dependent transport systems inner membrane component
1343	 65.98	0	1518381..1519550	-	389	115359313	-	Bamb_4567	-	glycine betaine/L-proline ABC transporter, ATPase subunit
1344	 70.94	0	1520164..1523583	+	1139	115359314	-	Bamb_4568	-	membrane protein-like protein
1345	 73.17	+1	1523580..1524917	+	445	115359315	-	Bamb_4569	-	hypothetical protein
1346	 71.74	+1	1525075..1525863	-	262	115359316	-	Bamb_4570	-	GCN5-related N-acetyltransferase
1347	 61.11	-1	1526122..1526427	+	101	115359317	-	Bamb_4571	-	NIPSNAP family protein
1348	 67.60	0	1526521..1527378	+	285	115359318	-	Bamb_4572	-	NADPH-dependent FMN reductase
1349	 67.12	0	1527601..1527819	+	72	115359319	-	Bamb_4573	-	hypothetical protein
1350	 66.78	0	1527911..1528813	+	300	115359320	-	Bamb_4574	-	hypothetical protein
1351	 65.13	0	1529890..1537371	+	2493	115359321	-	Bamb_4575	-	hemagluttinin domain-containing protein
1352	 70.52	0	1537495..1538169	+	224	115359322	-	Bamb_4576	-	OmpA/MotB domain-containing protein
1353	 64.73	0	1538488..1539675	+	395	115359323	-	Bamb_4577	-	hypothetical protein
1354	 62.68	-1	1539690..1540844	+	384	115359324	-	Bamb_4578	-	hypothetical protein
1355	 67.74	0	1540877..1541344	+	155	115359325	-	Bamb_4579	-	hypothetical protein
1356	 70.69	0	1541549..1541995	-	148	115359326	-	Bamb_4580	-	hypothetical protein
1357	 68.53	0	1542058..1542861	-	267	115359327	-	Bamb_4581	-	diguanylate phosphodiesterase
1358	 64.48	0	1543594..1544736	-	380	115359328	-	Bamb_4582	-	hypothetical protein
1359	 52.45	-2	1544887..1545315	-	142	115359329	-	Bamb_4583	-	hypothetical protein
1360	 55.14	-2	1545646..1545888	+	80	115359330	-	Bamb_4584	-	hypothetical protein
1361	 70.16	0	1546084..1548084	-	666	115359331	-	Bamb_4585	-	carbamoyl-phosphate synthase L chain, ATP-binding
1362	 71.63	+1	1548121..1548906	-	261	115359332	-	Bamb_4586	-	enoyl-CoA hydratase
1363	 67.54	0	1548926..1550533	-	535	115359333	-	Bamb_4587	-	propionyl-CoA carboxylase
1364	 65.40	0	1550565..1551746	-	393	115359334	-	Bamb_4588	-	acyl-CoA dehydrogenase domain-containing protein
1365	 69.08	0	1551918..1552664	+	248	115359335	-	Bamb_4589	-	TetR family transcriptional regulator
1366	 65.95	0	1552737..1553294	-	185	115359336	-	Bamb_4590	-	MarR family transcriptional regulator
1367	 67.29	0	1553381..1554502	+	373	115359337	-	Bamb_4591	-	vanillate monooxygenase
1368	 68.32	0	1554499..1555464	+	321	115359338	-	Bamb_4592	-	ferredoxin
1369	 65.91	0	1555513..1556574	+	353	115359339	-	Bamb_4593	-	Rieske (2Fe-2S) domain-containing protein
1370	 69.64	0	1556705..1558048	+	447	115359340	-	Bamb_4594	-	major facilitator transporter
1371	 68.04	0	1558153..1559247	+	364	115359341	-	Bamb_4595	-	outer membrane protein (porin)
1372	 66.89	0	1559309..1559755	-	148	115359342	-	Bamb_4596	-	hypothetical protein
1373	 68.55	0	1560143..1562320	+	725	115359343	-	Bamb_4597	-	TonB-dependent siderophore receptor
1374	 68.51	0	1562399..1563430	-	343	115359344	-	Bamb_4598	-	putative dehydrogenase
1375	 69.07	0	1563460..1564668	-	402	115359345	-	Bamb_4599	-	mandelate racemase/muconate lactonizing protein
1376	 68.02	0	1564697..1565434	-	245	115359346	-	Bamb_4600	-	GntR family transcriptional regulator
1377	 71.93	+1	1565591..1567054	+	487	115359347	-	Bamb_4601	-	mannitol dehydrogenase domain-containing protein
1378	 69.06	0	1567191..1568483	+	430	115359348	-	Bamb_4602	-	major facilitator transporter
1379	 68.69	0	1568700..1569491	+	263	115359349	-	Bamb_4603	-	hypothetical protein
1380	 67.61	0	1569500..1570564	+	354	115359350	-	Bamb_4604	-	ABC transporter, periplasmic ligand binding protein
1381	 73.94	+1	1570611..1571297	+	228	115359351	-	Bamb_4605	-	cytochrome c, class I
1382	 70.54	0	1571294..1572223	+	309	115359352	-	Bamb_4606	-	cytochrome c, class I
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.