IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1177	 63.91	0	1338609..1338935	+	108	115359147	-	Bamb_4399	-	hypothetical protein
1178	 67.01	0	1338939..1339802	+	287	115359148	-	Bamb_4400	-	beta-lactamase domain-containing protein
1179	 63.19	0	1339948..1340235	-	95	115359149	-	Bamb_4401	-	hypothetical protein
1180	 63.77	0	1340481..1340756	-	91	115359150	-	Bamb_4402	-	hypothetical protein
1181	 70.75	0	1341099..1342985	+	628	115359151	-	Bamb_4403	-	Fis family GAF modulated sigma54 specific transcriptional regulator
1182	 67.66	0	1343127..1343429	+	100	115359152	-	Bamb_4404	-	ferredoxin
1183	 63.23	0	1343486..1343980	+	164	115359153	-	Bamb_4405	-	hypothetical protein
1184	 70.11	0	1344082..1344459	+	125	115359154	-	Bamb_4406	-	hypothetical protein
1185	 64.48	0	1344684..1345049	+	121	115359155	-	Bamb_4407	-	copper resistance protein CopC
1186	 66.00	0	1345102..1345548	+	148	115359156	-	Bamb_4408	-	hypothetical protein
1187	 68.07	0	1345666..1345950	-	94	115359157	-	Bamb_4409	-	hypothetical protein
1188	 69.50	0	1345963..1347372	-	469	115359158	-	Bamb_4410	-	serine/threonine protein kinase
1189	 64.36	0	1347610..1348608	-	332	115359159	-	Bamb_4411	-	transketolase, central region
1190	 64.18	0	1348605..1349450	-	281	115359160	-	Bamb_4412	-	transketolase domain-containing protein
1191	 65.91	0	1349488..1350813	-	441	115359161	-	Bamb_4413	-	major facilitator transporter
1192	 67.73	0	1350888..1351637	-	249	115359162	-	Bamb_4414	-	short-chain dehydrogenase/reductase SDR
1193	 64.44	0	1351800..1352699	-	299	115359163	-	Bamb_4415	-	LysR family transcriptional regulator
1194	 63.59	0	1352949..1353371	+	140	115359164	-	Bamb_4416	-	glyoxalase/bleomycin resistance protein/dioxygenase
1195	 68.25	0	1353409..1354293	-	294	115359165	-	Bamb_4417	-	LysR family transcriptional regulator
1196	 68.51	0	1354371..1355672	+	433	115359166	-	Bamb_4418	-	aminotransferase class-III
1197	 69.20	0	1355748..1356497	-	249	115359167	-	Bamb_4419	-	short-chain dehydrogenase/reductase SDR
1198	 68.00	0	1356543..1357520	+	325	115359168	-	Bamb_4420	-	AraC family transcriptional regulator
1199	 70.62	0	1357594..1358454	+	286	115359169	-	Bamb_4421	-	AraC family transcriptional regulator
1200	 65.93	0	1358499..1358906	+	135	115359170	-	Bamb_4422	-	hypothetical protein
1201	 66.56	0	1359083..1360006	-	307	115359171	-	Bamb_4424	-	hypothetical protein
1202	 65.75	0	1360020..1361006	-	328	115359172	-	Bamb_4425	-	hypothetical protein
1203	 61.25	-1	1361036..1362013	-	325	115359173	-	Bamb_4426	-	hypothetical protein
1204	 65.02	0	1362146..1362997	+	283	115359174	-	Bamb_4427	-	LysR family transcriptional regulator
1205	 67.09	0	1363089..1363790	-	233	115359175	-	Bamb_4428	-	ABC transporter related
1206	 66.54	0	1363790..1364563	-	257	115359176	livG	Bamb_4429	-	leucine/isoleucine/valine transporter ATP-binding subunit
1207	 66.51	0	1364560..1365831	-	423	115359177	livM	Bamb_4430	-	leucine/isoleucine/valine transporter permease subunit
1208	 65.05	0	1365843..1366769	-	308	115359178	-	Bamb_4431	-	inner-membrane translocator
1209	 64.43	0	1366942..1368060	-	372	115359179	-	Bamb_4432	-	extracellular ligand-binding receptor
1210	 61.46	-1	1368822..1369493	+	223	115359180	-	Bamb_4433	-	hypothetical protein
1211	 46.69	-2	1370047..1371603	+	518	115359181	-	Bamb_4434	-	hypothetical protein
1212	 65.89	0	1371940..1372452	-	170	115359182	-	Bamb_4435	-	OmpA/MotB domain-containing protein
1213	 68.09	0	1372537..1373805	-	422	115359183	-	Bamb_4436	-	diguanylate cyclase
1214	 69.92	0	1373802..1374509	-	235	115359184	-	Bamb_4437	-	hypothetical protein
1215	 64.30	0	1374957..1375844	+	295	115359185	-	Bamb_4438	-	LysR family transcriptional regulator
1216	 68.89	0	1376006..1377442	+	478	115359186	-	Bamb_4439	-	N-acyl-D-amino-acid deacylase
1217	 66.82	0	1377533..1378873	+	446	115359187	-	Bamb_4440	-	major facilitator transporter
1218	 71.07	+1	1378888..1380228	+	446	115359188	-	Bamb_4441	-	amidase
1219	 70.13	0	1380345..1381586	+	413	115359189	-	Bamb_4442	-	D-amino-acid dehydrogenase
1220	 66.80	0	1381597..1382358	-	253	115359190	-	Bamb_4443	-	GntR domain-containing protein
1221	 70.59	0	1382430..1383320	-	296	115359191	-	Bamb_4444	-	amidohydrolase 2
1222	 64.65	0	1383364..1384305	-	313	115359192	-	Bamb_4445	-	periplasmic binding protein/LacI transcriptional regulator
1223	 67.05	0	1384383..1385420	-	345	115359193	-	Bamb_4446	-	inner-membrane translocator
1224	 67.83	0	1385437..1386978	-	513	115359194	-	Bamb_4447	-	ABC transporter related
1225	 68.34	0	1386991..1387767	-	258	115359195	-	Bamb_4448	-	short chain dehydrogenase
1226	 67.37	0	1387821..1389098	-	425	115359196	-	Bamb_4449	-	mandelate racemase/muconate lactonizing protein
1227	 68.09	0	1389122..1389964	-	280	115359197	-	Bamb_4450	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
1228	 70.07	0	1390018..1390782	-	254	115359198	-	Bamb_4451	-	short-chain dehydrogenase/reductase SDR
1229	 70.10	0	1391456..1391746	+	96	115359199	-	Bamb_4452	-	hypothetical protein
1230	 65.02	0	1393112..1393414	+	100	115359200	-	Bamb_4454	-	hypothetical protein
1231	 68.50	0	1393607..1394803	-	398	115359201	-	Bamb_4455	-	gamma-butyrobetaine dioxygenase
1232	 71.47	+1	1394826..1395782	-	318	115359202	-	Bamb_4456	-	alpha/beta hydrolase domain-containing protein
1233	 68.51	0	1395808..1396296	-	162	115359203	-	Bamb_4457	-	thioesterase-like protein
1234	 68.63	0	1396303..1397268	-	321	115359204	-	Bamb_4458	-	3-hydroxybutyryl-CoA dehydrogenase
1235	 68.60	0	1397358..1398287	-	309	115359205	-	Bamb_4459	-	hypothetical protein
1236	 64.57	0	1398390..1399343	-	317	115359206	-	Bamb_4460	-	substrate-binding region of ABC-type glycine betaine transport system
1237	 66.46	0	1399653..1400624	-	323	115359207	-	Bamb_4461	-	LysR family transcriptional regulator
1238	 65.84	0	1400758..1403058	+	766	115359208	-	Bamb_4462	-	malic enzyme
1239	 57.67	-2	1403548..1404747	+	399	115359209	-	Bamb_4463	-	major facilitator transporter
1240	 62.42	-1	1405028..1406182	-	384	115359210	-	Bamb_4464	-	aminotransferase, class V
1241	 67.57	0	1406483..1408255	+	590	115359211	-	Bamb_4465	-	sulfate transporter
1242	 65.36	0	1408399..1409925	+	508	115359212	-	Bamb_4466	-	CHAD domain-containing protein
1243	 69.76	0	1409954..1410502	-	182	115359213	-	Bamb_4467	-	cytochrome c, class I
1244	 66.27	0	1410499..1410999	-	166	115359214	-	Bamb_4468	-	cytochrome c, class I
1245	 64.29	0	1410996..1411541	-	181	115359215	-	Bamb_4469	-	amine dehydrogenase
1246	 66.04	0	1411581..1412216	-	211	115359216	-	Bamb_4470	-	methylamine dehydrogenase accessory protein MauD
1247	 69.73	0	1412213..1412767	-	184	115359217	-	Bamb_4471	-	hypothetical protein
1248	 65.98	0	1412775..1413932	-	385	115359218	-	Bamb_4472	-	amine dehydrogenase
1249	 68.12	0	1414175..1415137	+	320	115359219	-	Bamb_4473	-	AraC family transcriptional regulator
1250	 68.68	0	1415271..1416215	+	314	115359220	-	Bamb_4474	-	AraC family transcriptional regulator
1251	 68.30	0	1416694..1418412	+	572	115359221	-	Bamb_4475	-	propeptide, peptidase M4 and M36
1252	 66.43	0	1418489..1419742	+	417	115359222	-	Bamb_4476	-	leucyl aminopeptidase
1253	 66.67	0	1419852..1420220	+	122	115359223	-	Bamb_4477	-	hypothetical protein
1254	 68.61	0	1420242..1420961	-	239	115359224	-	Bamb_4478	-	PepSY-associated TM helix domain-containing protein
1255	 66.37	0	1420958..1421641	-	227	115359225	-	Bamb_4479	-	putative hydroxylase
1256	 65.58	0	1421686..1423890	-	734	115359226	-	Bamb_4480	-	TonB-dependent siderophore receptor
1257	 70.26	0	1424412..1425662	-	416	115359227	-	Bamb_4481	-	major facilitator transporter
1258	 63.86	0	1425899..1427038	-	379	115359228	-	Bamb_4482	-	porin
1259	 68.32	0	1427295..1428263	-	322	115359229	-	Bamb_4483	-	substrate-binding region of ABC-type glycine betaine transport system
1260	 69.99	0	1428308..1429843	-	511	115359230	-	Bamb_4484	-	sulfatase
1261	 72.17	+1	1430045..1430971	+	308	115359231	-	Bamb_4485	-	LysR family transcriptional regulator
1262	 65.54	0	1431169..1432053	+	294	115359232	-	Bamb_4486	-	formyltetrahydrofolate deformylase
1263	 64.07	0	1432214..1433869	-	551	115359233	-	Bamb_4487	-	amino acid permease-associated region
1264	 63.77	0	1434048..1434911	-	287	115359234	-	Bamb_4488	-	substrate-binding region of ABC-type glycine betaine transport system
1265	 65.71	0	1435045..1436193	-	382	115359235	-	Bamb_4489	-	oxidoreductase FAD-binding subunit
1266	 63.12	0	1436306..1437547	-	413	115359236	-	Bamb_4490	-	Rieske (2Fe-2S) domain-containing protein
1267	 70.74	0	1437601..1438386	-	261	115359237	-	Bamb_4491	-	electron transfer flavoprotein beta-subunit
1268	 71.20	+1	1438383..1439552	-	389	115359238	-	Bamb_4492	-	electron transfer flavoprotein, alpha subunit
1269	 69.99	0	1439557..1441482	-	641	115359239	-	Bamb_4493	-	hypothetical protein
1270	 66.28	0	1441485..1443548	-	687	115359240	-	Bamb_4494	-	NADH:flavin oxidoreductase/NADH oxidase
1271	 64.79	0	1443623..1444156	-	177	115359241	-	Bamb_4495	-	4-vinyl reductase, 4VR
1272	 61.21	-1	1444290..1445261	-	323	115359242	-	Bamb_4496	-	membrane dipeptidase
1273	 67.84	0	1445304..1446578	-	424	115359243	-	Bamb_4497	-	serine hydroxymethyltransferase
1274	 66.86	0	1447026..1448048	+	340	115359244	-	Bamb_4498	-	AraC family transcriptional regulator
1275	 65.11	0	1448104..1449516	-	470	115359245	-	Bamb_4499	-	coagulation factor 5/8 type domain-containing protein
1276	 68.22	0	1449802..1451220	+	472	115359246	-	Bamb_4500	-	GntR family transcriptional regulator
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.