IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1097	 70.03	0	1244240..1245427	-	395	115359067	-	Bamb_4319	-	glycine betaine/L-proline ABC transporter, ATPase subunit
1098	 69.92	0	1245433..1245801	-	122	115359068	-	Bamb_4320	-	NIPSNAP family protein
1099	 71.17	+1	1245798..1246640	-	280	115359069	-	Bamb_4321	-	alpha/beta hydrolase fold
1100	 68.25	0	1246644..1247720	-	358	115359070	-	Bamb_4322	-	luciferase family protein
1101	 68.19	0	1247752..1249263	-	503	115359071	-	Bamb_4323	-	aldehyde dehydrogenase
1102	 69.92	0	1249292..1250275	-	327	115359072	-	Bamb_4324	-	flavin reductase domain-containing protein
1103	 70.48	0	1250740..1252548	-	602	115359073	-	Bamb_4325	-	hypothetical protein
1104	 69.47	0	1252693..1253298	+	201	115359074	-	Bamb_4326	-	hypothetical protein
1105	 72.59	+1	1253400..1254344	+	314	115359075	-	Bamb_4327	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1106	 67.01	0	1254476..1255651	+	391	115359076	-	Bamb_4328	-	porin
1107	 56.28	-2	1255784..1256746	-	320	115359077	-	Bamb_4329	-	ferredoxin
1108	 55.31	-2	1256786..1257886	-	366	115359078	-	Bamb_4330	-	vanillate monooxygenase
1109	 55.30	-2	1258653..1259549	-	298	115359079	-	Bamb_4331	-	LysR family transcriptional regulator
1110	 65.01	0	1260053..1260415	-	120	115359080	-	Bamb_4332	-	hypothetical protein
1111	 62.93	0	1260449..1260769	+	106	115359081	-	Bamb_4333	-	hypothetical protein
1112	 60.06	-1	1260797..1261870	+	357	115359082	-	Bamb_4334	-	hypothetical protein
1113	 58.99	-1	1261946..1262362	+	138	115359083	-	Bamb_4335	-	hypothetical protein
1114	 60.53	-1	1262854..1263081	+	75	115359084	-	Bamb_4336	-	hypothetical protein
1115	 65.63	0	1263078..1263656	+	192	115359085	-	Bamb_4337	-	hypothetical protein
1116	 68.97	0	1263870..1264607	+	245	115359086	-	Bamb_4338	-	hypothetical protein
1117	 67.36	0	1264734..1265312	-	192	115359087	-	Bamb_4339	-	NnrU family protein
1118	 70.09	0	1265549..1265986	-	145	115359088	-	Bamb_4340	-	TfoX domain-containing protein
1119	 71.62	+1	1265983..1267092	-	369	115359089	-	Bamb_4341	-	hypothetical protein
1120	 69.55	0	1267163..1268617	-	484	115359090	-	Bamb_4342	-	peptidase M20
1121	 74.46	+1	1268768..1269832	-	354	115359091	-	Bamb_4343	-	2-nitropropane dioxygenase, NPD
1122	 67.26	0	1270277..1271803	+	508	115359092	-	Bamb_4344	-	arginine:agmatin antiporter
1123	 67.35	0	1271806..1274145	+	779	115359093	-	Bamb_4345	-	lysine decarboxylase
1124	 67.04	0	1274215..1275009	-	264	115359094	-	Bamb_4346	-	hypothetical protein
1125	 61.48	-1	1275276..1276181	+	301	115359095	-	Bamb_4347	-	hypothetical protein
1126	 72.00	+1	1276201..1277175	-	324	115359096	ftrA	Bamb_4348	-	transcriptional activator FtrA
1127	 70.00	0	1277287..1277706	+	139	115359097	-	Bamb_4349	-	rhodanese domain-containing protein
1128	 64.22	0	1277797..1278123	+	108	115359098	-	Bamb_4350	-	hypothetical protein
1129	 72.84	+1	1278139..1279320	-	393	115359099	-	Bamb_4351	-	cytochrome P450-like protein
1130	 65.53	0	1279485..1279748	-	87	115359100	-	Bamb_4352	-	hypothetical protein
1131	 71.20	+1	1280081..1280941	-	286	115359101	-	Bamb_4353	-	PEP phosphonomutase
1132	 67.83	0	1281342..1282202	-	286	115359102	-	Bamb_4354	-	RpiR family transcriptional regulator
1133	 64.69	0	1282258..1282611	-	117	115359103	-	Bamb_4355	-	hypothetical protein
1134	 68.02	0	1282837..1283499	+	220	115359104	-	Bamb_4356	-	two component transcriptional regulator
1135	 70.66	0	1283496..1284872	+	458	115359105	-	Bamb_4357	-	periplasmic sensor signal transduction histidine kinase
1136	 67.11	0	1285083..1285529	+	148	115359106	-	Bamb_4358	-	MarR family transcriptional regulator
1137	 61.79	-1	1285568..1285936	+	122	115359107	-	Bamb_4359	-	antibiotic biosynthesis monooxygenase
1138	 71.48	+1	1286725..1287618	-	297	115359108	-	Bamb_4360	-	Beta-lactamase
1139	 70.15	0	1287735..1288625	+	296	115359109	-	Bamb_4361	-	LysR family transcriptional regulator
1140	 67.06	0	1289122..1289373	-	83	115359110	-	Bamb_4362	-	hypothetical protein
1141	 71.38	+1	1289472..1291697	-	741	115359111	-	Bamb_4363	-	Amylo-alpha-1,6-glucosidase
1142	 71.51	+1	1291854..1298969	-	2371	115359112	-	Bamb_4364	-	outer membrane autotransporter
1143	 68.09	0	1299703..1300335	-	210	115359113	-	Bamb_4365	-	hypothetical protein
1144	 71.21	+1	1300568..1301602	-	344	115359114	-	Bamb_4366	-	cell shape determining protein MreB
1145	 69.26	0	1301859..1304249	+	796	115359115	-	Bamb_4367	-	patatin
1146	 68.08	0	1304328..1305458	-	376	115359116	-	Bamb_4368	-	periplasmic sensor signal transduction histidine kinase
1147	 67.08	0	1305523..1306251	-	242	115359117	-	Bamb_4369	-	two component transcriptional regulator
1148	 65.77	0	1306365..1307366	+	333	115359118	-	Bamb_4370	-	glutaminase
1149	 64.39	0	1307534..1308454	+	306	115359119	-	Bamb_4371	-	LysR family transcriptional regulator
1150	 65.25	0	1308584..1309219	+	211	115359120	-	Bamb_4372	-	isochorismatase hydrolase
1151	 64.89	0	1309288..1310019	-	243	115359121	-	Bamb_4373	-	ribonuclease T2
1152	 68.38	0	1310201..1311604	-	467	115359122	-	Bamb_4374	-	hypothetical protein
1153	 64.97	0	1311967..1312614	+	215	115359123	-	Bamb_4375	-	hypothetical protein
1154	 71.51	+1	1312686..1313243	+	185	115359124	-	Bamb_4376	-	XRE family transcriptional regulator
1155	 67.53	0	1313352..1313933	+	193	115359125	-	Bamb_4377	-	metal-dependent phosphohydrolase
1156	 70.89	0	1314013..1315551	-	512	115359126	-	Bamb_4378	-	major facilitator transporter
1157	 67.66	0	1315729..1316634	+	301	115359127	-	Bamb_4379	-	LysR family transcriptional regulator
1158	 68.95	0	1316696..1317835	-	379	115359128	-	Bamb_4380	-	enoyl-CoA hydratase/isomerase
1159	 72.10	+1	1317832..1318623	-	263	115359129	-	Bamb_4381	-	enoyl-CoA hydratase
1160	 69.88	0	1318620..1319522	-	300	115359130	-	Bamb_4382	-	3-hydroxyisobutyrate dehydrogenase
1161	 67.45	0	1319541..1321070	-	509	115359131	-	Bamb_4383	-	methylmalonate-semialdehyde dehydrogenase
1162	 67.72	0	1321178..1322884	-	568	115359132	-	Bamb_4384	-	AMP-dependent synthetase and ligase
1163	 67.99	0	1323069..1324202	-	377	115359133	-	Bamb_4385	-	acyl-CoA dehydrogenase domain-containing protein
1164	 70.43	0	1324340..1325374	+	344	115359134	-	Bamb_4386	-	AraC family transcriptional regulator
1165	 73.89	+1	1325497..1327074	+	525	115359135	-	Bamb_4387	-	hypothetical protein
1166	 65.12	0	1327071..1327844	+	257	115359136	-	Bamb_4388	-	band 7 protein
1167	 64.08	0	1327919..1329196	-	425	115359137	-	Bamb_4389	-	phosphoserine phosphatase
1168	 69.72	0	1329619..1330602	+	327	115359138	-	Bamb_4390	-	hypothetical protein
1169	 71.19	+1	1330599..1332455	+	618	115359139	-	Bamb_4391	-	short chain dehydrogenase
1170	 65.45	0	1332490..1333395	+	301	115359140	-	Bamb_4392	-	metal-dependent hydrolase
1171	 64.93	0	1333498..1333785	+	95	115359141	-	Bamb_4393	-	hypothetical protein
1172	 69.53	0	1334037..1334420	+	127	115359142	-	Bamb_4394	-	hypothetical protein
1173	 62.72	-1	1334602..1334880	-	92	115359143	-	Bamb_4395	-	hypothetical protein
1174	 65.98	0	1335638..1336939	+	433	115359144	-	Bamb_4396	-	xanthine/uracil/vitamin C permease
1175	 68.69	0	1337012..1337899	-	295	115359145	-	Bamb_4397	-	LysR family transcriptional regulator
1176	 67.42	0	1338065..1338595	+	176	115359146	-	Bamb_4398	-	hypothetical protein
1177	 63.91	0	1338609..1338935	+	108	115359147	-	Bamb_4399	-	hypothetical protein
1178	 67.01	0	1338939..1339802	+	287	115359148	-	Bamb_4400	-	beta-lactamase domain-containing protein
1179	 63.19	0	1339948..1340235	-	95	115359149	-	Bamb_4401	-	hypothetical protein
1180	 63.77	0	1340481..1340756	-	91	115359150	-	Bamb_4402	-	hypothetical protein
1181	 70.75	0	1341099..1342985	+	628	115359151	-	Bamb_4403	-	Fis family GAF modulated sigma54 specific transcriptional regulator
1182	 67.66	0	1343127..1343429	+	100	115359152	-	Bamb_4404	-	ferredoxin
1183	 63.23	0	1343486..1343980	+	164	115359153	-	Bamb_4405	-	hypothetical protein
1184	 70.11	0	1344082..1344459	+	125	115359154	-	Bamb_4406	-	hypothetical protein
1185	 64.48	0	1344684..1345049	+	121	115359155	-	Bamb_4407	-	copper resistance protein CopC
1186	 66.00	0	1345102..1345548	+	148	115359156	-	Bamb_4408	-	hypothetical protein
1187	 68.07	0	1345666..1345950	-	94	115359157	-	Bamb_4409	-	hypothetical protein
1188	 69.50	0	1345963..1347372	-	469	115359158	-	Bamb_4410	-	serine/threonine protein kinase
1189	 64.36	0	1347610..1348608	-	332	115359159	-	Bamb_4411	-	transketolase, central region
1190	 64.18	0	1348605..1349450	-	281	115359160	-	Bamb_4412	-	transketolase domain-containing protein
1191	 65.91	0	1349488..1350813	-	441	115359161	-	Bamb_4413	-	major facilitator transporter
1192	 67.73	0	1350888..1351637	-	249	115359162	-	Bamb_4414	-	short-chain dehydrogenase/reductase SDR
1193	 64.44	0	1351800..1352699	-	299	115359163	-	Bamb_4415	-	LysR family transcriptional regulator
1194	 63.59	0	1352949..1353371	+	140	115359164	-	Bamb_4416	-	glyoxalase/bleomycin resistance protein/dioxygenase
1195	 68.25	0	1353409..1354293	-	294	115359165	-	Bamb_4417	-	LysR family transcriptional regulator
1196	 68.51	0	1354371..1355672	+	433	115359166	-	Bamb_4418	-	aminotransferase class-III
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.