IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
55	 70.56	0	61569..63056	-	495	115358025	-	Bamb_3274	-	RND efflux system outer membrane lipoprotein
56	 67.55	0	63070..64656	-	528	115358026	-	Bamb_3275	-	EmrB/QacA family drug resistance transporter
57	 71.22	+1	64649..65767	-	372	115358027	-	Bamb_3276	-	secretion protein HlyD family protein
58	 69.08	0	65860..66687	+	275	115358028	-	Bamb_3277	-	TetR family transcriptional regulator
59	 70.02	0	66701..69295	-	864	115358029	-	Bamb_3278	-	MscS mechanosensitive ion channel
60	 70.39	0	69333..70298	-	321	115358030	-	Bamb_3279	-	luciferase family protein
61	 67.65	0	70347..70652	-	101	115358031	-	Bamb_3280	-	hypothetical protein
62	 62.80	-1	70649..71062	-	137	115358032	-	Bamb_3281	-	hypothetical protein
63	 65.22	0	71189..71395	+	68	115358033	-	Bamb_3282	-	hypothetical protein
64	 70.90	0	71392..72288	+	298	115358034	-	Bamb_3283	-	NAD-dependent deacetylase
65	 72.74	+1	72285..72926	+	213	115358035	-	Bamb_3284	-	hypothetical protein
66	 66.17	0	73024..74436	+	470	115358036	-	Bamb_3285	-	6-phosphogluconate dehydrogenase
67	 66.38	0	74635..74979	+	114	115358037	-	Bamb_3286	-	hypothetical protein
68	 70.09	0	75091..75411	-	106	115358038	-	Bamb_3287	-	hypothetical protein
69	 72.27	+1	75826..76557	+	243	115358039	-	Bamb_3288	-	peptidase M23B
70	 65.26	0	76606..77316	-	236	115358040	-	Bamb_3289	-	hypothetical protein
71	 62.94	0	77476..78012	+	178	115358041	-	Bamb_3290	-	cytochrome B561
72	 71.00	0	78169..78537	+	122	115358042	-	Bamb_3291	-	hypothetical protein
73	 68.83	0	78621..80750	+	709	115358043	-	Bamb_3292	-	TonB-dependent copper receptor
74	 66.85	0	80980..82074	+	364	115358044	-	Bamb_3293	-	triacylglycerol lipase
75	 74.30	+1	82078..83112	+	344	115358045	-	Bamb_3294	-	lipase chaperone
76	 69.55	0	83152..84675	-	507	115358046	-	Bamb_3295	-	GntR family transcriptional regulator
77	 66.39	0	84784..85878	+	364	115358047	-	Bamb_3296	-	spermidine/putrescine ABC transporter ATPase subunit
78	 64.47	0	85956..87002	+	348	115358048	-	Bamb_3297	-	extracellular solute-binding protein
79	 68.17	0	87105..88367	+	420	115358049	-	Bamb_3298	-	binding-protein-dependent transport systems inner membrane component
80	 67.50	0	88405..89241	+	278	115358050	-	Bamb_3299	-	binding-protein-dependent transport systems inner membrane component
81	 71.95	+1	89371..90864	+	497	115358051	-	Bamb_3300	-	major facilitator transporter
82	 67.59	0	90937..92676	-	579	115358052	-	Bamb_3301	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
83	 65.12	0	93377..93700	+	107	115358053	-	Bamb_3302	-	ArsR family transcriptional regulator
84	 65.05	0	93697..94128	+	143	115358054	-	Bamb_3303	-	activator of Hsp90 ATPase 1 family protein
85	 68.71	0	94125..94565	+	146	115358055	-	Bamb_3304	-	hypothetical protein
86	 64.42	0	94709..97426	-	905	115358056	acnA	Bamb_3305	-	aconitate hydratase
87	 67.01	0	97479..98930	-	483	115358057	prpD	Bamb_3306	-	2-methylcitrate dehydratase
88	 65.88	0	98962..99471	-	169	115358058	-	Bamb_3307	-	hypothetical protein
89	 72.14	+1	99695..100699	-	334	115358059	-	Bamb_3308	-	HpcH/HpaI aldolase
90	 65.65	0	100886..101872	-	328	115358060	-	Bamb_3309	-	malate dehydrogenase
91	 66.79	0	102161..102985	+	274	115358061	-	Bamb_3310	-	GntR family transcriptional regulator
92	 58.27	-2	103155..103571	+	138	115358062	-	Bamb_3311	-	succinate dehydrogenase, cytochrome b subunit
93	 62.33	-1	103576..103944	+	122	115358063	-	Bamb_3312	-	succinate dehydrogenase, cytochrome b subunit
94	 65.32	0	103948..105723	+	591	115358064	sdhA	Bamb_3313	-	succinate dehydrogenase flavoprotein subunit
95	 62.54	-1	105745..106446	+	233	115358065	sdhB	Bamb_3314	-	succinate dehydrogenase iron-sulfur subunit
96	 60.81	-1	106453..106725	+	90	115358066	-	Bamb_3315	-	hypothetical protein
97	 60.75	-1	106792..108093	+	433	115358067	gltA	Bamb_3316	-	type II citrate synthase
98	 72.76	+1	108183..109166	-	327	115358068	-	Bamb_3317	-	AraC family transcriptional regulator
99	 68.21	0	109238..109627	+	129	115358069	-	Bamb_3318	-	glyoxalase/bleomycin resistance protein/dioxygenase
100	 70.10	0	109739..110992	+	417	115358070	-	Bamb_3319	-	hypothetical protein
101	 69.13	0	111217..111987	+	256	115358071	-	Bamb_3320	-	dimethylargininase
102	 64.09	0	112089..112553	+	154	115358072	-	Bamb_3321	-	AsnC family transcriptional regulator
103	 66.54	0	112694..114229	+	511	115358073	-	Bamb_3322	-	amino acid permease-associated region
104	 65.43	0	114431..115156	-	241	115358074	-	Bamb_3323	-	glutathione S-transferase domain-containing protein
105	 67.57	0	115284..115616	-	110	115358075	-	Bamb_3324	-	cupin 2 domain-containing protein
106	 58.83	-1	115836..116882	-	348	115358076	-	Bamb_3325	-	hypothetical protein
107	 57.66	-2	117318..118172	-	284	115358077	-	Bamb_3326	-	xylose isomerase domain-containing protein
108	 59.01	-1	118514..119479	+	321	115358078	-	Bamb_3327	-	periplasmic binding protein/LacI transcriptional regulator
109	 61.02	-1	119611..120690	+	359	115358079	-	Bamb_3328	-	oxidoreductase domain-containing protein
110	 59.60	-1	121149..122732	+	527	115358080	-	Bamb_3329	-	ABC transporter related
111	 61.33	-1	122725..123735	+	336	115358081	-	Bamb_3330	-	inner-membrane translocator
112	 59.08	-1	123750..124724	+	324	115358082	-	Bamb_3331	-	inner-membrane translocator
113	 58.01	-2	124976..125899	-	307	115358083	-	Bamb_3332	-	LysR family transcriptional regulator
114	 58.73	-2	126199..127080	+	293	115358084	-	Bamb_3333	-	catechol 1,2-dioxygenase
115	 55.56	-2	127077..127427	+	116	115358085	-	Bamb_3334	-	stress responsive alpha-beta barrel domain-containing protein
116	 62.67	-1	127414..128490	+	358	115358086	-	Bamb_3335	-	iron-containing alcohol dehydrogenase
117	 53.68	-2	128535..128819	+	94	115358087	-	Bamb_3336	-	YciI-like protein
118	 60.57	-1	128973..129776	+	267	115358088	-	Bamb_3337	-	short-chain dehydrogenase/reductase SDR
119	 60.22	-1	130208..131200	+	330	115358089	-	Bamb_3338	-	inositol 2-dehydrogenase
120	 59.74	-1	131309..132217	+	302	115358090	-	Bamb_3339	-	LysR family transcriptional regulator
121	 66.45	0	132441..133850	+	469	115358091	-	Bamb_3340	-	isopropylmalate isomerase large subunit
122	 72.11	+1	133854..134000	+	48	115358092	-	Bamb_3341	-	entericidin EcnAB
123	 63.44	0	134066..134716	+	216	115358093	leuD	Bamb_3342	-	isopropylmalate isomerase small subunit
124	 66.39	0	134792..135859	+	355	115358094	-	Bamb_3343	-	3-isopropylmalate dehydrogenase
125	 64.35	0	136181..137302	+	373	115358095	-	Bamb_3344	-	aspartate-semialdehyde dehydrogenase
126	 73.53	+1	137569..139653	+	694	115358096	-	Bamb_3345	-	hypothetical protein
127	 68.51	0	139653..140465	+	270	115358097	truA	Bamb_3346	-	tRNA pseudouridine synthase A
128	 69.09	0	140462..141163	+	233	115358098	-	Bamb_3347	-	N-(5'-phosphoribosyl)anthranilate isomerase
129	 66.42	0	141220..142413	+	397	115358099	-	Bamb_3348	-	tryptophan synthase subunit beta
130	 65.61	0	142421..143272	+	283	115358100	-	Bamb_3349	-	DNA methylase N-4/N-6 domain-containing protein
131	 69.11	0	143314..144132	+	272	115358101	trpA	Bamb_3350	-	tryptophan synthase subunit alpha
132	 65.86	0	144199..145071	+	290	115358102	-	Bamb_3351	-	acetyl-CoA carboxylase subunit beta
133	 67.51	0	145172..146482	+	436	115358103	-	Bamb_3352	-	FolC bifunctional protein
134	 72.14	+1	146512..147369	+	285	115358104	-	Bamb_3353	-	sporulation domain-containing protein
135	 65.86	0	147376..147870	+	164	115358105	-	Bamb_3354	-	colicin V production protein
136	 64.84	0	147922..149454	+	510	115358106	-	Bamb_3355	-	amidophosphoribosyltransferase
137	 66.67	0	149673..150905	+	410	115358107	-	Bamb_3356	-	O-succinylhomoserine sulfhydrylase
138	 70.69	0	151001..151969	-	322	115358108	-	Bamb_3357	-	NAD-dependent epimerase/dehydratase
139	 65.14	0	151956..153002	-	348	115358109	-	Bamb_3358	-	GDP-mannose 4,6-dehydratase
140	 69.30	0	153038..154102	-	354	115358110	-	Bamb_3359	-	acyltransferase 3
141	 68.74	0	154572..156788	+	738	115358111	-	Bamb_3361	-	hypothetical protein
142	 66.33	0	156830..158296	+	488	115358112	-	Bamb_3362	-	polysaccharide biosynthesis protein
143	 59.83	-1	158310..159362	-	350	115358113	-	Bamb_3363	-	IS605 family transposase OrfB
144	 70.03	0	159479..161947	+	822	115358114	-	Bamb_3364	-	glycosyl transferase, group 1
145	 68.03	0	162364..163539	-	391	115358115	-	Bamb_3365	-	acyltransferase 3
146	 62.50	-1	163753..163896	+	47	115358116	-	Bamb_3366	-	hypothetical protein
147	 64.19	0	164126..165013	+	295	115358117	-	Bamb_3367	-	UTP-glucose-1-phosphate uridylyltransferase
148	 68.57	0	165223..165537	+	104	115358118	-	Bamb_3368	-	hypothetical protein
149	 67.20	0	165501..166619	-	372	115358119	-	Bamb_3369	-	acyltransferase 3
150	 57.14	-2	166646..167107	-	153	115358120	-	Bamb_3370	-	acyltransferase family protein
151	 63.19	0	167138..167425	-	95	115358121	-	Bamb_3371	-	acyltransferase family protein
152	 67.93	0	167797..168192	+	131	115358122	-	Bamb_3372	-	streptomycin 3''-adenylyltransferase
153	 66.46	0	168645..169118	-	157	115358123	-	Bamb_3373	-	3-demethylubiquinone-9 3-methyltransferase
154	 64.51	0	169507..170664	-	385	115358124	-	Bamb_3374	-	porin
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.