IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
977	 65.93	0	1116870..1117958	-	362	115358947	-	Bamb_4198	-	alcohol dehydrogenase
978	 66.37	0	1118008..1119021	-	337	115358948	-	Bamb_4199	-	inner-membrane translocator
979	 67.04	0	1119008..1120594	-	528	115358949	-	Bamb_4200	-	ABC transporter related
980	 67.19	0	1120591..1121544	-	317	115358950	-	Bamb_4201	-	periplasmic binding protein/LacI transcriptional regulator
981	 67.40	0	1121661..1122620	-	319	115358951	-	Bamb_4202	-	AraC family transcriptional regulator
982	 71.52	+1	1122871..1123818	-	315	115358952	-	Bamb_4203	-	2-dehydropantoate 2-reductase
983	 67.25	0	1124075..1125628	+	517	115358953	-	Bamb_4204	-	methyl-accepting chemotaxis sensory transducer
984	 66.67	0	1125904..1126581	-	225	115358954	-	Bamb_4205	-	two component LuxR family transcriptional regulator
985	 66.26	0	1126942..1127433	+	163	115358955	-	Bamb_4206	-	hypothetical protein
986	 68.27	0	1127803..1129236	-	477	115358956	-	Bamb_4207	-	sigma-54 dependent trancsriptional regulator
987	 60.82	-1	1129605..1130117	+	170	115358957	-	Bamb_4208	-	hypothetical protein
988	 68.72	0	1130185..1131111	-	308	115358958	-	Bamb_4209	-	AraC family transcriptional regulator
989	 68.83	0	1131293..1131754	+	153	115358959	-	Bamb_4210	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
990	 70.51	0	1131757..1133967	+	736	115358960	-	Bamb_4211	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
991	 59.84	-1	1134076..1135350	-	424	115358961	-	Bamb_4212	-	filamentation induced by cAMP protein Fic
992	 61.40	-1	1135718..1136116	+	132	115358962	-	Bamb_4213	-	response regulator receiver protein
993	 74.52	+1	1136505..1137650	+	381	115358963	-	Bamb_4214	-	type III secretion system apparatus protein YscQ/HrcQ
994	 65.48	0	1137654..1138328	+	224	115358964	-	Bamb_4215	-	type III secretion system protein
995	 72.01	+1	1138325..1139128	+	267	115358965	-	Bamb_4216	-	lytic transglycosylase, catalytic
996	 70.12	0	1139201..1141168	-	655	115358966	-	Bamb_4217	-	asparagine synthase (glutamine-hydrolyzing)
997	 60.08	-1	1141178..1141435	-	85	115358967	-	Bamb_4218	-	hypothetical protein
998	 67.73	0	1141414..1142445	-	343	115358968	-	Bamb_4219	-	type III secretion exporter
999	 67.28	0	1142470..1143279	-	269	115358969	-	Bamb_4220	-	type III secretion protein SpaR/YscT/HrcT
1000	 74.30	+1	1143273..1143953	-	226	115358970	-	Bamb_4221	-	hypothetical protein
1001	 69.84	0	1143946..1145331	-	461	115358971	-	Bamb_4222	-	type III secretion apparatus H+-transporting two-sector ATPase
1002	 70.00	0	1145328..1145957	-	209	115358972	-	Bamb_4223	-	HrpE/YscL family type III secretion apparatus protein
1003	 72.20	+1	1145939..1146679	-	246	115358973	-	Bamb_4224	-	hypothetical protein
1004	 71.94	+1	1146676..1147605	-	309	115358974	-	Bamb_4225	-	YscJ/HrcJ family type III secretion apparatus lipoprotein
1005	 68.55	0	1147684..1148214	-	176	115358975	-	Bamb_4226	-	hypothetical protein
1006	 72.99	+1	1148661..1150019	-	452	115358976	-	Bamb_4227	-	YscD/HrpQ family type III secretion apparatus protein
1007	 67.45	0	1150000..1152045	-	681	115358977	-	Bamb_4228	-	YscC/HrcC family type III secretion outer membrane protein
1008	 65.23	0	1152045..1152323	-	92	115358978	-	Bamb_4229	-	HrpO family type III secretion protein
1009	 69.73	0	1152320..1154569	-	749	115358979	-	Bamb_4230	-	type III secretion FHIPEP protein
1010	 64.63	0	1154763..1155596	-	277	115358980	-	Bamb_4231	-	LuxR family transcriptional regulator
1011	 66.67	0	1155876..1156781	+	301	115358981	-	Bamb_4232	-	LuxR family transcriptional regulator
1012	 67.09	0	1156860..1158506	-	548	115358982	-	Bamb_4233	-	natural resistance-associated macrophage protein
1013	 66.32	0	1158545..1158832	+	95	115358983	-	Bamb_4234	-	hypothetical protein
1014	 71.06	+1	1159810..1160082	+	90	115358984	-	Bamb_4235	-	hypothetical protein
1015	 69.57	0	1160194..1161672	+	492	115358985	-	Bamb_4236	-	carbohydrate-selective porin OprB
1016	 68.32	0	1161766..1163520	-	584	115358986	-	Bamb_4237	-	Alpha,alpha-trehalase
1017	 67.66	0	1163813..1165228	+	471	115358987	-	Bamb_4238	-	major facilitator transporter
1018	 68.56	0	1165577..1166788	+	403	115358988	-	Bamb_4239	-	hypothetical protein
1019	 61.64	-1	1166891..1167109	-	72	115358989	-	Bamb_4240	-	hypothetical protein
1020	 66.44	0	1167165..1167608	-	147	115358990	-	Bamb_4241	-	GCN5-related N-acetyltransferase
1021	 67.44	0	1167736..1168380	+	214	115358991	-	Bamb_4242	-	hydrolase
1022	 65.97	0	1168793..1169365	+	190	115358992	-	Bamb_4243	-	hypothetical protein
1023	 64.00	0	1169483..1170082	-	199	115358993	-	Bamb_4244	-	GCN5-related N-acetyltransferase
1024	 70.16	0	1170193..1171107	-	304	115358994	-	Bamb_4245	-	DNA-binding transcriptional regulator LysR
1025	 67.47	0	1171217..1172455	+	412	115358995	-	Bamb_4246	-	diaminopimelate decarboxylase
1026	 59.45	-1	1172822..1173874	-	350	115358996	-	Bamb_4247	-	IS605 family transposase OrfB
1027	 65.67	0	1174202..1175002	+	266	115358997	-	Bamb_4248	-	extracellular solute-binding protein
1028	 67.27	0	1175077..1175736	+	219	115358998	-	Bamb_4249	-	polar amino acid ABC transporter, inner membrane subunit
1029	 63.70	0	1175733..1176506	+	257	115358999	-	Bamb_4250	-	ABC transporter related
1030	 69.53	0	1176556..1177743	+	395	115359000	-	Bamb_4251	-	cystathionine beta-lyase
1031	 66.67	0	1177822..1178166	+	114	115359001	-	Bamb_4252	-	hypothetical protein
1032	 68.12	0	1178599..1178943	+	114	115359002	-	Bamb_4253	-	hypothetical protein
1033	 73.39	+1	1178945..1179985	+	346	115359003	-	Bamb_4254	-	hypothetical protein
1034	 69.30	0	1180036..1180719	-	227	115359004	-	Bamb_4255	-	LuxR family transcriptional regulator
1035	 66.09	0	1181002..1181694	+	230	115359005	-	Bamb_4256	-	hypothetical protein
1036	 70.76	0	1182124..1182612	+	162	115359006	-	Bamb_4257	-	hypothetical protein
1037	 70.02	0	1182596..1183042	+	148	115359007	-	Bamb_4258	-	lysozyme
1038	 69.35	0	1183374..1184342	+	322	115359008	-	Bamb_4259	-	poly (3-hydroxybutyrate) depolymerase
1039	 73.11	+1	1184398..1184940	+	180	115359009	-	Bamb_4260	-	hypothetical protein
1040	 69.57	0	1184937..1185557	+	206	115359010	-	Bamb_4261	-	LigA
1041	 64.72	0	1185670..1186287	+	205	115359011	-	Bamb_4262	-	hypothetical protein
1042	 63.92	0	1186358..1186975	+	205	115359012	-	Bamb_4263	-	hypothetical protein
1043	 70.61	0	1187034..1187921	-	295	115359013	-	Bamb_4264	-	hypothetical protein
1044	 71.95	+1	1188049..1189506	+	485	115359014	-	Bamb_4265	-	GntR family transcriptional regulator
1045	 66.60	0	1189549..1190982	-	477	115359015	-	Bamb_4266	-	putative nicotinate phosphoribosyltransferase
1046	 65.99	0	1191057..1192097	-	346	115359016	-	Bamb_4267	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
1047	 66.23	0	1192283..1192735	+	150	115359017	-	Bamb_4268	-	hypothetical protein
1048	 72.22	+1	1192743..1193120	-	125	115359018	-	Bamb_4269	-	S-adenosylmethionine decarboxylase related
1049	 68.90	0	1193263..1194783	-	506	115359019	-	Bamb_4270	-	hypothetical protein
1050	 68.07	0	1194793..1195863	-	356	115359020	-	Bamb_4271	-	putative virion core protein
1051	 62.27	-1	1195890..1196276	-	128	115359021	-	Bamb_4272	-	hypothetical protein
1052	 66.73	0	1196413..1197927	+	504	115359022	-	Bamb_4273	-	spermidine synthase
1053	 71.42	+1	1197927..1199546	+	539	115359023	-	Bamb_4274	-	hypothetical protein
1054	 69.69	0	1199695..1200456	+	253	115359024	-	Bamb_4275	-	cell wall hydrolase/autolysin
1055	 64.36	0	1200506..1200895	+	129	115359025	-	Bamb_4276	-	hypothetical protein
1056	 65.90	0	1200974..1201498	+	174	115359026	-	Bamb_4277	-	GCN5-related N-acetyltransferase
1057	 67.11	0	1201846..1203192	-	448	115359027	-	Bamb_4278	-	glutamine synthetase, catalytic region
1058	 66.31	0	1203339..1203896	-	185	115359028	-	Bamb_4279	-	XRE family transcriptional regulator
1059	 70.89	0	1203922..1205247	-	441	115359029	-	Bamb_4280	-	FAD dependent oxidoreductase
1060	 62.33	-1	1205501..1205938	-	145	115359030	-	Bamb_4281	-	AsnC family transcriptional regulator
1061	 68.60	0	1205935..1206864	-	309	115359031	-	Bamb_4282	-	homocysteine S-methyltransferase
1062	 64.62	0	1206968..1208137	-	389	115359032	-	Bamb_4283	-	cystathionine gamma-synthase
1063	 64.66	0	1208182..1208877	-	231	115359033	-	Bamb_4284	-	polar amino acid ABC transporter, inner membrane subunit
1064	 62.83	-1	1208891..1209568	-	225	115359034	-	Bamb_4285	-	polar amino acid ABC transporter, inner membrane subunit
1065	 63.46	0	1209640..1210419	-	259	115359035	-	Bamb_4286	-	extracellular solute-binding protein
1066	 63.16	0	1210451..1211248	-	265	115359036	-	Bamb_4287	-	ABC transporter related
1067	 67.71	0	1211329..1212759	-	476	115359037	-	Bamb_4288	-	aldehyde dehydrogenase
1068	 66.49	0	1212756..1213880	-	374	115359038	-	Bamb_4289	-	homoserine dehydrogenase
1069	 61.85	-1	1213987..1214484	-	165	115359039	-	Bamb_4290	-	AsnC family transcriptional regulator
1070	 67.65	0	1214516..1215226	-	236	115359040	-	Bamb_4291	-	hypothetical protein
1071	 59.13	-1	1215720..1216064	-	114	115359041	-	Bamb_4292	-	small multidrug resistance protein
1072	 60.21	-1	1216126..1217829	-	567	115359042	-	Bamb_4293	-	glucose-methanol-choline oxidoreductase
1073	 57.86	-2	1217923..1218762	-	279	115359043	-	Bamb_4294	-	binding-protein-dependent transport systems inner membrane component
1074	 59.62	-1	1218767..1220029	-	420	115359044	-	Bamb_4295	-	binding-protein-dependent transport systems inner membrane component
1075	 58.96	-1	1220047..1221084	-	345	115359045	-	Bamb_4296	-	ABC spermidine/putrescine transporter, periplasmic ligand binding protein
1076	 57.08	-2	1221119..1222213	-	364	115359046	-	Bamb_4297	-	spermidine/putrescine ABC transporter ATPase subunit
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.