IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.92   STD DEV: 4.28
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545
3213 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
911	 70.01	0	1003850..1004566	-	238	115350967	-	Bamb_0913	-	phosphoglycolate phosphatase
912	 65.52	0	1004580..1005278	-	232	115350968	-	Bamb_0914	-	3-demethylubiquinone-9 3-methyltransferase
913	 61.73	-1	1005433..1006101	-	222	115350969	-	Bamb_0915	-	OmpA/MotB domain-containing protein
914	 64.48	0	1006639..1009242	+	867	115350970	-	Bamb_0916	-	DNA gyrase subunit A
915	 61.86	-1	1009323..1009925	+	200	115350971	-	Bamb_0917	-	hypothetical protein
916	 65.47	0	1010087..1011169	+	360	115350972	-	Bamb_0918	-	phosphoserine aminotransferase
917	 68.33	0	1011204..1012286	+	360	115350973	-	Bamb_0919	-	chorismate mutase
918	 71.31	+1	1012410..1013399	+	329	115350974	-	Bamb_0920	-	prephenate dehydrogenase
919	 67.97	0	1013413..1014717	+	434	115350975	-	Bamb_0921	-	3-phosphoshikimate 1-carboxyvinyltransferase
920	 66.81	0	1014731..1015417	+	228	115350976	-	Bamb_0922	-	cytidylate kinase
921	 60.31	-1	1015542..1017272	+	576	115350977	rpsA	Bamb_0923	-	30S ribosomal protein S1
922	 61.73	-1	1017295..1017618	+	107	115350978	ihfB	Bamb_0924	-	integration host factor subunit beta
923	 63.61	0	1017829..1018122	+	97	115350979	-	Bamb_0925	-	hypothetical protein
924	 64.11	0	1018176..1019348	+	390	115350980	-	Bamb_0926	-	hypothetical protein
925	 65.88	0	1019439..1020839	+	466	115350981	-	Bamb_0927	-	UDP-glucose 6-dehydrogenase
926	 67.72	0	1020847..1021797	+	316	115350982	-	Bamb_0928	-	rfaE bifunctional protein
927	 63.65	0	1021853..1022845	+	330	115350983	-	Bamb_0929	-	ADP-L-glycero-D-manno-heptose-6-epimerase
928	 68.12	0	1022919..1023263	+	114	115350984	-	Bamb_0930	-	helix-hairpin-helix DNA-binding motif-containing protein
929	 64.89	0	1023449..1024351	+	300	115350985	cysM	Bamb_0931	-	cysteine synthase B
930	 66.00	0	1024428..1025774	-	448	115350986	-	Bamb_0932	-	lytic murein transglycosylase B
931	 66.56	0	1025818..1026741	+	307	115350987	-	Bamb_0933	-	histone deacetylase superfamily protein
932	 71.34	+1	1026768..1027730	-	320	115350988	-	Bamb_0934	-	alpha/beta hydrolase fold
933	 67.05	0	1027904..1028938	+	344	115350989	-	Bamb_0935	-	ABC transporter related
934	 66.97	0	1028928..1029581	+	217	115350990	-	Bamb_0936	-	binding-protein-dependent transport systems inner membrane component
935	 65.66	0	1029610..1030404	+	264	115350991	-	Bamb_0937	-	YaeC family lipoprotein
936	 64.00	0	1030634..1031383	+	249	115350992	-	Bamb_0938	-	electron transfer flavoprotein beta-subunit
937	 65.06	0	1031400..1032335	+	311	115350993	-	Bamb_0939	-	electron transfer flavoprotein, alpha subunit
938	 67.29	0	1032668..1033954	-	428	115350994	-	Bamb_0940	-	D-amino acid dehydrogenase small subunit
939	 58.65	-1	1034040..1034588	+	182	115350995	-	Bamb_0941	-	AsnC family transcriptional regulator
940	 67.43	0	1034698..1035876	+	392	115350996	-	Bamb_0942	-	radical SAM domain-containing protein
941	 66.48	0	1035893..1036429	-	178	115350997	-	Bamb_0943	-	hypothetical protein
942	 69.82	0	1036470..1037609	-	379	115350998	-	Bamb_0944	-	glucose/sorbosone dehydrogenases-like protein
943	 61.57	-1	1037763..1038017	+	84	115350999	rpsP	Bamb_0945	-	30S ribosomal protein S16
944	 65.27	0	1038027..1038740	+	237	115351000	rimM	Bamb_0946	-	16S rRNA-processing protein
945	 65.03	0	1038737..1039531	+	264	115351001	trmD	Bamb_0947	-	tRNA (guanine-N(1)-)-methyltransferase
946	 59.29	-1	1039665..1040057	+	130	115351002	rplS	Bamb_0948	-	50S ribosomal protein L19
947	 67.10	0	1040144..1040830	+	228	115351003	-	Bamb_0949	-	NUDIX hydrolase
948	 64.00	0	1040951..1041889	+	312	115351004	-	Bamb_0950	-	adenosylcobinamide-phosphate synthase
949	 71.07	0	1041975..1042292	-	105	115351005	-	Bamb_0951	-	hypothetical protein
950	 68.26	0	1042345..1043286	-	313	115351006	-	Bamb_0952	-	ribosome-associated GTPase
951	 66.43	0	1043283..1044542	-	419	115351007	-	Bamb_0953	-	Ste24 endopeptidase
952	 65.86	0	1044642..1045262	+	206	115351008	-	Bamb_0954	-	oligoribonuclease
953	 69.79	0	1045297..1045905	-	202	115351009	mogA	Bamb_0955	-	molybdenum cofactor biosynthesis protein
954	 67.48	0	1045889..1046500	-	203	115351010	-	Bamb_0956	-	hypothetical protein
955	 68.78	0	1046622..1047992	+	456	115351011	-	Bamb_0957	-	peptidase U62, modulator of DNA gyrase
956	 68.71	0	1048080..1048667	-	195	115351012	-	Bamb_0958	-	dihydrofolate reductase
957	 62.24	-1	1048863..1049246	-	127	115351013	-	Bamb_0959	-	hypothetical protein
958	 67.53	0	1049696..1051093	+	465	115351014	-	Bamb_0960	-	sigma-54 dependent trancsriptional regulator
959	 66.26	0	1051136..1052107	+	323	115351015	-	Bamb_0961	-	thymidylate synthase
960	 72.77	+1	1052216..1054786	-	856	115351016	-	Bamb_0962	-	hypothetical protein
961	 74.15	+1	1054949..1055656	-	235	115351017	-	Bamb_0963	-	ArsR family transcriptional regulator
962	 70.76	0	1055803..1055973	+	56	115351018	-	Bamb_0964	-	hypothetical protein
963	 66.28	0	1056118..1056630	+	170	115351019	-	Bamb_0965	-	thioesterase superfamily protein
964	 67.96	0	1056686..1058080	-	464	115351020	fumC	Bamb_0966	-	fumarate hydratase
965	 71.06	0	1058237..1059625	-	462	115351021	-	Bamb_0967	-	MATE efflux family protein
966	 63.64	0	1059754..1060017	-	87	115351022	-	Bamb_0968	-	hypothetical protein
967	 70.56	0	1060260..1060670	+	136	115351023	-	Bamb_0969	-	hypothetical protein
968	 67.57	0	1060786..1061562	-	258	115351024	-	Bamb_0970	-	hypothetical protein
969	 69.91	0	1061720..1062058	-	112	115351025	-	Bamb_0971	-	branched-chain amino acid transport
970	 70.41	0	1062055..1062828	-	257	115351026	-	Bamb_0972	-	AzlC family protein
971	 70.87	0	1062951..1063853	-	300	115351027	-	Bamb_0973	-	AraC family transcriptional regulator
972	 66.87	0	1063915..1064400	-	161	115351028	-	Bamb_0974	-	CreA family protein
973	 61.11	-1	1064836..1065159	-	107	115351029	-	Bamb_0975	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
974	 63.42	0	1065447..1066646	+	399	115351030	-	Bamb_0976	-	nicotinate phosphoribosyltransferase
975	 72.10	+1	1066733..1067395	+	220	115351031	-	Bamb_0977	-	hypothetical protein
976	 67.30	0	1067448..1068878	+	476	115351032	-	Bamb_0978	-	Na+/H+ antiporter NhaD and related arsenite permeases-like protein
977	 69.29	0	1068960..1069949	+	329	115351033	-	Bamb_0979	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
978	 68.82	0	1069946..1071433	+	495	115351034	-	Bamb_0980	-	hypothetical protein
979	 68.11	0	1071528..1072013	-	161	115351035	-	Bamb_0981	-	GCN5-related N-acetyltransferase
980	 63.41	0	1072010..1072285	-	91	115351036	-	Bamb_0982	-	hypothetical protein
981	 72.53	+1	1072323..1073618	-	431	115351037	-	Bamb_0983	-	molybdenum cofactor synthesis domain-containing protein
982	 71.52	+1	1073724..1074341	-	205	115351038	mobA	Bamb_0984	-	molybdopterin-guanine dinucleotide biosynthesis protein A
983	 69.72	0	1074370..1075482	-	370	115351039	moaA	Bamb_0985	-	molybdenum cofactor biosynthesis protein A
984	 69.66	0	1075614..1078820	-	1068	115351040	-	Bamb_0986	-	ribonuclease
985	 62.45	-1	1079179..1079415	+	78	115351041	-	Bamb_0987	-	ribosomal large subunit pseudouridine synthase C
986	 66.17	0	1079542..1080546	+	334	115351042	-	Bamb_0988	-	RluA family pseudouridine synthase
987	 68.31	0	1080543..1081211	+	222	115351043	-	Bamb_0989	-	HAD family hydrolase
988	 71.78	+1	1081208..1081618	+	136	115351044	-	Bamb_0990	-	Rieske (2Fe-2S) domain-containing protein
989	 66.77	0	1081631..1082623	+	330	115351045	-	Bamb_0991	-	peptidase S49
990	 68.33	0	1082694..1083416	-	240	115351046	-	Bamb_0992	-	uroporphyrin-III C/tetrapyrrole methyltransferase
991	 69.84	0	1083413..1084042	-	209	115351047	-	Bamb_0993	-	Maf-like protein
992	 61.79	-1	1084285..1084920	+	211	115351048	-	Bamb_0994	-	hypothetical protein
993	 58.33	-2	1085019..1085198	+	59	115351049	rpmF	Bamb_0995	-	50S ribosomal protein L32
994	 64.68	0	1085328..1086434	+	368	115351050	-	Bamb_0996	-	putative glycerol-3-phosphate acyltransferase PlsX
995	 66.77	0	1086435..1087424	+	329	115351051	-	Bamb_0997	-	3-oxoacyl-(acyl carrier protein) synthase III
996	 68.70	0	1087510..1088442	+	310	115351052	-	Bamb_0998	-	malonyl CoA-acyl carrier protein transacylase
997	 68.27	0	1088479..1089228	+	249	115351053	fabG	Bamb_0999	-	3-ketoacyl-(acyl-carrier-protein) reductase
998	 54.58	-2	1089373..1089612	+	79	115351054	acpP	Bamb_1000	-	acyl carrier protein
999	 65.17	0	1089742..1091007	+	421	115351055	-	Bamb_1001	-	3-oxoacyl-(acyl carrier protein) synthase II
1000	 74.41	+1	1091020..1091484	+	154	115351056	-	Bamb_1002	-	hypothetical protein
1001	 60.17	-1	1091576..1092175	+	199	115351057	-	Bamb_1003	-	RNA polymerase sigma factor RpoE
1002	 69.68	0	1092251..1092880	+	209	115351058	-	Bamb_1004	-	anti sigma-E protein, RseA
1003	 68.00	0	1092886..1093938	+	350	115351059	-	Bamb_1005	-	sigma E regulatory protein, MucB/RseB
1004	 68.13	0	1093955..1095454	+	499	115351060	-	Bamb_1006	-	protease Do
1005	 69.62	0	1095462..1095698	+	78	115351061	-	Bamb_1007	-	glutaredoxin 2
1006	 62.99	0	1095912..1097705	+	597	115351062	-	Bamb_1008	-	GTP-binding protein LepA
1007	 61.19	-1	1097722..1098615	+	297	115351063	-	Bamb_1009	-	signal peptidase I
1008	 69.25	0	1098776..1100053	+	425	115351064	-	Bamb_1010	-	ribonuclease III
1009	 64.00	0	1100114..1101013	+	299	115351065	era	Bamb_1011	-	GTP-binding protein Era
1010	 67.98	0	1101000..1101839	+	279	115351066	recO	Bamb_1012	-	DNA repair protein RecO
66.92	MEAN

4.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.