IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.92   STD DEV: 4.28
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545
3213 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
41	 72.37	+1	51405..52193	-	262	115350097	-	Bamb_0041	-	hypothetical protein
42	 69.43	0	52225..52731	-	168	115350098	-	Bamb_0042	-	general secretion pathway M protein
43	 73.45	+1	52728..54098	-	456	115350099	-	Bamb_0043	-	general secretion pathway protein L
44	 71.03	0	54123..55244	-	373	115350100	-	Bamb_0044	-	general secretion pathway protein K
45	 70.64	0	55247..55951	-	234	115350101	-	Bamb_0045	-	putative general secretion pathway protein J
46	 68.16	0	55929..56330	-	133	115350102	-	Bamb_0046	-	general secretion pathway protein I
47	 72.68	+1	56333..56881	-	182	115350103	-	Bamb_0047	-	general secretion pathway protein H
48	 62.91	0	56925..57377	-	150	115350104	-	Bamb_0048	-	general secretion pathway protein G
49	 70.80	0	57555..57965	+	136	115350105	-	Bamb_0049	-	general secretion pathway protein C
50	 68.47	0	57996..59213	-	405	115350106	-	Bamb_0050	-	general secretion pathway protein F
51	 68.67	0	59218..60717	-	499	115350107	-	Bamb_0051	-	general secretory pathway protein E
52	 67.18	0	60714..63047	-	777	115350108	-	Bamb_0052	-	general secretion pathway protein D
53	 61.88	-1	63387..63866	+	159	115350109	-	Bamb_0053	-	lytic transglycosylase, catalytic
54	 65.90	0	64066..65376	+	436	115350110	-	Bamb_0054	-	cobalamin synthesis protein, P47K
55	 61.29	-1	65512..65790	-	92	115350111	-	Bamb_0055	-	histone family protein DNA-binding protein
56	 71.52	+1	66181..68139	+	652	115350112	mnmC	Bamb_0056	-	5-methylaminomethyl-2-thiouridine methyltransferase
57	 60.00	-1	68442..68771	+	109	115350113	-	Bamb_0057	-	hypothetical protein
58	 64.86	0	68815..70029	+	404	115350114	-	Bamb_0058	-	sodium/hydrogen exchanger
59	 63.71	0	70044..71159	+	371	115350115	-	Bamb_0059	-	carboxylate-amine ligase
60	 56.51	-2	71169..71483	+	104	115350116	-	Bamb_0060	-	hypothetical protein
61	 67.14	0	71665..72303	+	212	115350117	-	Bamb_0061	-	MarR family transcriptional regulator
62	 70.60	0	72332..73042	+	236	115350118	-	Bamb_0062	-	glutamine amidotransferase
63	 69.90	0	73256..74368	+	370	115350119	-	Bamb_0063	-	NADH:flavin oxidoreductase/NADH oxidase
64	 61.82	-1	74549..75085	+	178	115350120	-	Bamb_0064	-	nuclear protein SET
65	 70.03	0	75176..76660	-	494	115350121	-	Bamb_0065	-	periplasmic sensor signal transduction histidine kinase
66	 66.23	0	76777..77469	-	230	115350122	-	Bamb_0066	-	two component transcriptional regulator
67	 59.39	-1	77562..77822	+	86	115350123	-	Bamb_0067	-	hypothetical protein
68	 62.78	0	77913..78221	-	102	115350124	phhB	Bamb_0068	-	pterin-4-alpha-carbinolamine dehydratase
69	 67.96	0	78400..79326	-	308	115350125	phhA	Bamb_0069	-	phenylalanine 4-monooxygenase
70	 66.87	0	79433..79918	+	161	115350126	-	Bamb_0070	-	AsnC family transcriptional regulator
71	 67.04	0	79973..80506	-	177	115350127	-	Bamb_0071	-	adenylate cyclase
72	 70.61	0	80702..81640	-	312	115350128	-	Bamb_0072	-	LysR family transcriptional regulator
73	 68.62	0	81776..83461	+	561	115350129	-	Bamb_0073	-	glucose-methanol-choline oxidoreductase
74	 64.74	0	83884..84663	+	259	115350130	-	Bamb_0074	-	ABC transporter related
75	 67.33	0	84660..85415	+	251	115350131	-	Bamb_0075	-	ABC transporter related
76	 64.25	0	85493..86692	+	399	115350132	-	Bamb_0076	-	extracellular ligand-binding receptor
77	 64.86	0	86812..87696	+	294	115350133	-	Bamb_0077	-	inner-membrane translocator
78	 67.38	0	87696..88670	+	324	115350134	-	Bamb_0078	-	inner-membrane translocator
79	 66.03	0	89193..89660	-	155	115350135	-	Bamb_0079	-	hypothetical protein
80	 66.32	0	89778..90935	+	385	115350136	-	Bamb_0080	-	extracellular ligand-binding receptor
81	 66.10	0	91137..92192	+	351	115350137	-	Bamb_0081	-	inner-membrane translocator
82	 67.28	0	92197..93981	+	594	115350138	-	Bamb_0082	-	ABC transporter related
83	 66.93	0	93981..94739	+	252	115350139	-	Bamb_0083	-	ABC transporter related
84	 64.64	0	95245..97215	+	656	115350140	-	Bamb_0084	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
85	 61.72	-1	97212..97898	+	228	115350141	-	Bamb_0085	-	methyltransferase GidB
86	 63.46	0	97950..98729	+	259	115350142	-	Bamb_0086	-	cobyrinic acid a,c-diamide synthase
87	 66.67	0	98737..99654	+	305	115350143	-	Bamb_0087	-	parB-like partition proteins
88	 66.75	0	99665..100798	+	377	115350144	-	Bamb_0088	-	citrate transporter
89	 58.28	-2	100817..101305	+	162	115350145	-	Bamb_0089	-	hypothetical protein
90	 65.56	0	101356..101898	+	180	115350146	-	Bamb_0090	-	F0F1-type ATP synthase subunit I-like protein
91	 60.90	-1	102009..102857	+	282	115350147	-	Bamb_0091	-	F0F1 ATP synthase subunit A
92	 58.89	-1	102933..103202	+	89	115350148	-	Bamb_0092	-	F0F1 ATP synthase subunit C
93	 63.48	0	103331..103801	+	156	115350149	-	Bamb_0093	-	F0F1 ATP synthase subunit B
94	 65.00	0	103804..104343	+	179	115350150	-	Bamb_0094	-	F0F1 ATP synthase subunit delta
95	 63.16	0	104388..105929	+	513	115350151	-	Bamb_0095	-	F0F1 ATP synthase subunit alpha
96	 62.21	-1	105999..106874	+	291	115350152	-	Bamb_0096	-	F0F1 ATP synthase subunit gamma
97	 61.36	-1	106941..108335	+	464	115350153	-	Bamb_0097	-	F0F1 ATP synthase subunit beta
98	 65.26	0	108580..109005	+	141	115350154	atpC	Bamb_0098	-	F0F1 ATP synthase subunit epsilon
99	 66.78	0	109263..110990	+	575	115350155	-	Bamb_0099	-	acyl-CoA synthetase
100	 65.44	0	111705..112517	-	270	115350156	-	Bamb_0100	-	prephenate dehydratase
101	 69.30	0	112583..113761	+	392	115350157	hemE	Bamb_0101	-	uroporphyrinogen decarboxylase
102	 72.41	+1	114210..116471	+	753	115350158	-	Bamb_0102	-	primosome assembly protein PriA
103	 69.95	0	116822..120754	+	1310	115350159	putA	Bamb_0103	-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
104	 63.86	0	120839..121978	+	379	115350160	-	Bamb_0104	-	extracellular ligand-binding receptor
105	 62.33	-1	122160..122828	-	222	115350161	-	Bamb_0105	-	(Acyl-carrier-protein) phosphodiesterase
106	 68.08	0	122942..123793	+	283	115350162	-	Bamb_0106	-	LysR family transcriptional regulator
107	 71.63	+1	123828..125480	-	550	115350163	-	Bamb_0107	-	acyl-CoA dehydrogenase domain-containing protein
108	 73.24	+1	125600..126268	+	222	115350164	-	Bamb_0108	-	TetR family transcriptional regulator
109	 67.62	0	126501..127655	+	384	115350165	-	Bamb_0109	-	putative aminotransferase
110	 66.90	0	127715..128560	+	281	115350166	-	Bamb_0110	-	extracellular solute-binding protein
111	 70.18	0	128572..129993	+	473	115350167	-	Bamb_0111	-	FAD linked oxidase domain-containing protein
112	 69.11	0	130020..130592	-	190	115350168	-	Bamb_0112	-	PadR-like family transcriptional regulator
113	 65.74	0	130661..131092	-	143	115350169	-	Bamb_0113	-	MerR family transcriptional regulator
114	 70.59	0	131738..133852	+	704	115350170	-	Bamb_0114	-	heavy metal translocating P-type ATPase
115	 73.70	+1	133863..134246	+	127	115350171	-	Bamb_0115	-	hypothetical protein
116	 67.71	0	134492..134971	-	159	115350172	-	Bamb_0116	-	transcription activator, effector binding
117	 67.96	0	135390..136853	+	487	115350173	-	Bamb_0117	-	TM helix repeat-containing protein
118	 67.02	0	137066..138478	+	470	115350174	-	Bamb_0118	-	ethanolamine transproter
119	 68.38	0	138590..139987	+	465	115350175	-	Bamb_0119	-	ethanolamine ammonia lyase large subunit
120	 73.33	+1	139984..140778	+	264	115350176	-	Bamb_0120	-	ethanolamine ammonia-lyase small subunit
121	 68.69	0	140809..141699	-	296	115350177	-	Bamb_0121	-	LysR family transcriptional regulator
122	 74.15	+1	141848..143464	+	538	115350178	-	Bamb_0122	-	major facilitator transporter
123	 68.07	0	143663..144091	-	142	115350179	-	Bamb_0123	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
124	 65.88	0	144409..145935	+	508	115350180	-	Bamb_0124	-	aldehyde dehydrogenase
125	 71.25	+1	146231..146776	+	181	115350181	-	Bamb_0125	-	hypothetical protein
126	 72.66	+1	146962..147996	+	344	115350182	-	Bamb_0126	-	AraC family transcriptional regulator
127	 72.24	+1	148060..149154	-	364	115350183	-	Bamb_0127	-	hypothetical protein
128	 71.42	+1	149151..150854	-	567	115350184	-	Bamb_0128	-	acetolactate synthase 2 catalytic subunit
129	 69.04	0	151019..152407	-	462	115350185	-	Bamb_0129	-	L-serine dehydratase 1
130	 69.83	0	152438..153574	-	378	115350186	-	Bamb_0130	-	hypothetical protein
131	 69.13	0	153727..156654	-	975	115350187	-	Bamb_0131	-	glycine dehydrogenase
132	 63.42	0	156720..157181	-	153	115350188	-	Bamb_0132	-	glycine cleavage system H protein
133	 67.46	0	157215..158348	-	377	115350189	gcvT	Bamb_0133	-	glycine cleavage system aminomethyltransferase T
134	 70.19	0	158800..159168	-	122	115350190	-	Bamb_0134	-	hypothetical protein
135	 70.47	0	159394..160446	-	350	115350191	-	Bamb_0135	-	oxidoreductase domain-containing protein
136	 76.90	+2	160670..161392	-	240	115350192	-	Bamb_0136	-	hypothetical protein
137	 65.61	0	161674..163761	+	695	115350193	-	Bamb_0137	-	UvrD/REP helicase
138	 68.87	0	163850..164758	-	302	115350194	-	Bamb_0138	-	cytochrome c, class I
139	 60.70	-1	165180..165464	-	94	115350195	-	Bamb_0139	-	XRE family transcriptional regulator
140	 55.24	-2	165457..165771	-	104	115350196	-	Bamb_0140	-	hypothetical protein
66.92	MEAN

4.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.