IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.92   STD DEV: 4.28
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545
3213 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
838	 70.68	0	928175..928423	+	82	115350894	-	Bamb_0840	-	putative methyl-accepting chemotaxis sensory transducer
839	 66.06	0	928460..929620	-	386	115350895	-	Bamb_0841	-	alkane 1-monooxygenase
840	 66.67	0	930295..930810	+	171	115350896	-	Bamb_0842	-	GCN5-related N-acetyltransferase
841	 64.97	0	930967..931731	+	254	115350897	-	Bamb_0843	-	septum formation inhibitor
842	 63.60	0	931791..932606	+	271	115350898	-	Bamb_0844	-	septum site-determining protein MinD
843	 61.57	-1	932619..932873	+	84	115350899	-	Bamb_0845	-	cell division topological specificity factor MinE
844	 69.90	0	933042..933443	+	133	115350900	-	Bamb_0846	-	hypothetical protein
845	 63.96	0	933456..933566	+	36	115350901	-	Bamb_0847	-	hypothetical protein
846	 70.56	0	933560..935125	-	521	115350902	-	Bamb_0848	-	Cl- channel, voltage-gated family protein
847	 70.77	0	935296..936294	+	332	115350903	-	Bamb_0849	-	lipopolysaccharide heptosyltransferase I
848	 68.89	0	936343..936522	-	59	115350904	-	Bamb_0850	-	hypothetical protein
849	 69.18	0	936627..937940	-	437	115350905	-	Bamb_0851	-	general substrate transporter
850	 69.44	0	938252..938755	-	167	115350906	-	Bamb_0852	-	TonB family protein
851	 64.29	0	938984..939277	-	97	115350907	-	Bamb_0853	-	hypothetical protein
852	 66.92	0	939435..939836	-	133	115350908	-	Bamb_0854	-	hypothetical protein
853	 66.83	0	940125..941339	-	404	115350909	-	Bamb_0855	-	coproporphyrinogen III oxidase
854	 70.00	0	941374..942003	-	209	115350910	-	Bamb_0856	-	putative deoxyribonucleotide triphosphate pyrophosphatase
855	 68.56	0	941996..942736	-	246	115350911	rph	Bamb_0857	-	ribonuclease PH
856	 66.56	0	942911..943834	+	307	115350912	-	Bamb_0858	-	hypothetical protein
857	 64.77	0	943916..944599	+	227	115350913	gmk	Bamb_0859	-	guanylate kinase
858	 63.24	0	944658..944861	+	67	115350914	-	Bamb_0860	-	DNA-directed RNA polymerase subunit omega
859	 65.15	0	944925..947291	+	788	115350915	-	Bamb_0861	-	(p)ppGpp synthetase I, SpoT/RelA
860	 65.78	0	947976..948539	+	187	115350916	greB	Bamb_0862	-	transcription elongation factor GreB
861	 65.00	0	948642..949784	-	380	115350917	-	Bamb_0863	-	porin
862	 65.53	0	950292..950555	-	87	115350918	-	Bamb_0864	-	hypothetical protein
863	 49.02	-2	950946..951149	+	67	115350919	-	Bamb_0865	-	cold-shock DNA-binding domain-containing protein
864	 69.33	0	951312..952439	+	375	115350920	-	Bamb_0866	-	DNA polymerase III, epsilon subunit
865	 71.04	0	952476..953069	-	197	115350921	-	Bamb_0867	-	chorismate mutase
866	 61.90	-1	953290..953436	-	48	115350922	-	Bamb_0868	-	hypothetical protein
867	 67.95	0	953556..954023	+	155	115350923	-	Bamb_0869	-	hypothetical protein
868	 68.79	0	954151..956505	+	784	115350924	-	Bamb_0870	-	TonB-dependent receptor
869	 70.48	0	956493..957752	+	419	115350925	-	Bamb_0871	-	hypothetical protein
870	 69.77	0	957749..958231	+	160	115350926	-	Bamb_0872	-	hypothetical protein
871	 64.31	0	958314..958568	-	84	115350927	-	Bamb_0873	-	transglycosylase-associated protein
872	 66.20	0	958830..959042	-	70	115350928	-	Bamb_0874	-	hypothetical protein
873	 68.10	0	959039..960784	-	581	115350929	-	Bamb_0875	-	hypothetical protein
874	 68.52	0	960959..961768	-	269	115350930	-	Bamb_0876	-	LuxR family transcriptional regulator
875	 64.71	0	962241..963260	-	339	115350931	-	Bamb_0877	-	fructose-1,6-bisphosphatase
876	 68.41	0	963549..966242	-	897	115350932	-	Bamb_0878	-	aminopeptidase N
877	 70.66	0	966430..967131	+	233	115350933	-	Bamb_0879	-	hypothetical protein
878	 66.97	0	967204..967860	-	218	115350934	-	Bamb_0880	-	hypothetical protein
879	 69.55	0	968099..969415	-	438	115350935	-	Bamb_0881	-	guanine deaminase
880	 72.90	+1	969412..969732	-	106	115350936	-	Bamb_0882	-	hypothetical protein
881	 65.98	0	969823..970848	-	341	115350937	-	Bamb_0883	-	adenosine deaminase
882	 70.75	0	970867..971871	-	334	115350938	-	Bamb_0884	-	hypothetical protein
883	 66.86	0	972506..973018	-	170	115350939	-	Bamb_0885	-	disulfide bond formation protein B
884	 73.42	+1	973162..974538	-	458	115350940	-	Bamb_0886	-	amidase
885	 67.82	0	974546..975322	-	258	115350941	-	Bamb_0887	-	GntR family transcriptional regulator
886	 69.00	0	975445..976728	+	427	115350942	-	Bamb_0888	-	peptidase C26
887	 68.20	0	976893..977543	+	216	115350943	-	Bamb_0889	-	hypothetical protein
888	 69.82	0	977621..978604	-	327	115350944	-	Bamb_0890	-	hypothetical protein
889	 65.90	0	978824..980119	+	431	115350945	-	Bamb_0891	-	general substrate transporter
890	 71.38	+1	980194..982104	-	636	115350946	-	Bamb_0892	-	TPR repeat-containing protein
891	 71.45	+1	982163..983815	+	550	115350947	-	Bamb_0893	-	monooxygenase, FAD-binding
892	 67.86	0	983824..984075	-	83	115350948	-	Bamb_0894	-	formate dehydrogenase, delta subunit
893	 67.28	0	984083..987034	-	983	115350949	-	Bamb_0895	-	formate dehydrogenase, alpha subunit
894	 70.09	0	987052..988629	-	525	115350950	-	Bamb_0896	-	NADH dehydrogenase (quinone)
895	 72.46	+1	988626..989126	-	166	115350951	-	Bamb_0897	-	NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
896	 70.73	0	989258..990364	+	368	115350952	-	Bamb_0898	-	molybdate metabolism transcriptional regulator
897	 64.44	0	990465..990734	+	89	115350953	-	Bamb_0899	-	hypothetical protein
898	 67.80	0	991060..991413	+	117	115350954	-	Bamb_0900	-	hypothetical protein
899	 52.07	-2	991833..992990	-	385	115350955	-	Bamb_0901	-	hypothetical protein
900	 60.55	-1	993180..993866	-	228	115350956	-	Bamb_0902	-	hypothetical protein
901	 59.81	-1	993916..994644	+	242	115350957	-	Bamb_0903	-	hypothetical protein
902	 61.90	-1	994686..994979	+	97	115350958	-	Bamb_0904	-	hypothetical protein
903	 58.76	-1	994982..995272	+	96	115350959	-	Bamb_0905	-	hypothetical protein
904	 55.94	-2	995527..995787	+	86	115350960	-	Bamb_0906	-	hypothetical protein
905	 59.58	-1	996458..997798	-	446	115350961	-	Bamb_0907	-	hypothetical protein
906	 64.47	0	999170..999670	+	166	115350962	-	Bamb_0908	-	hypothetical protein
907	 64.14	0	999675..999872	+	65	115350963	-	Bamb_0909	-	phage transcriptional regulator, AlpA
908	 55.36	-2	1000007..1000519	-	170	115350964	-	Bamb_0910	-	hypothetical protein
909	 54.59	-2	1000780..1001541	-	253	115350965	-	Bamb_0911	-	hypothetical protein
910	 64.90	0	1002058..1003299	-	413	115350966	-	Bamb_0912	-	phage integrase family protein
911	 70.01	0	1003850..1004566	-	238	115350967	-	Bamb_0913	-	phosphoglycolate phosphatase
912	 65.52	0	1004580..1005278	-	232	115350968	-	Bamb_0914	-	3-demethylubiquinone-9 3-methyltransferase
913	 61.73	-1	1005433..1006101	-	222	115350969	-	Bamb_0915	-	OmpA/MotB domain-containing protein
914	 64.48	0	1006639..1009242	+	867	115350970	-	Bamb_0916	-	DNA gyrase subunit A
915	 61.86	-1	1009323..1009925	+	200	115350971	-	Bamb_0917	-	hypothetical protein
916	 65.47	0	1010087..1011169	+	360	115350972	-	Bamb_0918	-	phosphoserine aminotransferase
917	 68.33	0	1011204..1012286	+	360	115350973	-	Bamb_0919	-	chorismate mutase
918	 71.31	+1	1012410..1013399	+	329	115350974	-	Bamb_0920	-	prephenate dehydrogenase
919	 67.97	0	1013413..1014717	+	434	115350975	-	Bamb_0921	-	3-phosphoshikimate 1-carboxyvinyltransferase
920	 66.81	0	1014731..1015417	+	228	115350976	-	Bamb_0922	-	cytidylate kinase
921	 60.31	-1	1015542..1017272	+	576	115350977	rpsA	Bamb_0923	-	30S ribosomal protein S1
922	 61.73	-1	1017295..1017618	+	107	115350978	ihfB	Bamb_0924	-	integration host factor subunit beta
923	 63.61	0	1017829..1018122	+	97	115350979	-	Bamb_0925	-	hypothetical protein
924	 64.11	0	1018176..1019348	+	390	115350980	-	Bamb_0926	-	hypothetical protein
925	 65.88	0	1019439..1020839	+	466	115350981	-	Bamb_0927	-	UDP-glucose 6-dehydrogenase
926	 67.72	0	1020847..1021797	+	316	115350982	-	Bamb_0928	-	rfaE bifunctional protein
927	 63.65	0	1021853..1022845	+	330	115350983	-	Bamb_0929	-	ADP-L-glycero-D-manno-heptose-6-epimerase
928	 68.12	0	1022919..1023263	+	114	115350984	-	Bamb_0930	-	helix-hairpin-helix DNA-binding motif-containing protein
929	 64.89	0	1023449..1024351	+	300	115350985	cysM	Bamb_0931	-	cysteine synthase B
930	 66.00	0	1024428..1025774	-	448	115350986	-	Bamb_0932	-	lytic murein transglycosylase B
931	 66.56	0	1025818..1026741	+	307	115350987	-	Bamb_0933	-	histone deacetylase superfamily protein
932	 71.34	+1	1026768..1027730	-	320	115350988	-	Bamb_0934	-	alpha/beta hydrolase fold
933	 67.05	0	1027904..1028938	+	344	115350989	-	Bamb_0935	-	ABC transporter related
934	 66.97	0	1028928..1029581	+	217	115350990	-	Bamb_0936	-	binding-protein-dependent transport systems inner membrane component
935	 65.66	0	1029610..1030404	+	264	115350991	-	Bamb_0937	-	YaeC family lipoprotein
936	 64.00	0	1030634..1031383	+	249	115350992	-	Bamb_0938	-	electron transfer flavoprotein beta-subunit
937	 65.06	0	1031400..1032335	+	311	115350993	-	Bamb_0939	-	electron transfer flavoprotein, alpha subunit
66.92	MEAN

4.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.