IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.92   STD DEV: 4.28
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545
3213 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
711	 72.85	+1	794518..795180	+	220	115350767	-	Bamb_0713	-	xanthine and Co dehydrogenase maturation factor
712	 69.40	0	795277..795678	+	133	115350768	-	Bamb_0714	-	hypothetical protein
713	 69.20	0	795721..796668	-	315	115350769	-	Bamb_0715	-	LysR family transcriptional regulator
714	 66.20	0	796737..797375	-	212	115350770	-	Bamb_0716	-	DSBA oxidoreductase
715	 71.62	+1	797467..798939	-	490	115350771	-	Bamb_0717	-	TRAP-type uncharacterized transport system periplasmic component-like protein
716	 66.94	0	799404..799769	+	121	115350772	-	Bamb_0718	-	transport-associated
717	 71.65	+1	800018..802105	+	695	115350773	-	Bamb_0719	-	hypothetical protein
718	 72.37	+1	802323..803111	-	262	115350774	-	Bamb_0720	-	hypothetical protein
719	 72.65	+1	803458..804192	-	244	115350775	-	Bamb_0721	-	DSBA oxidoreductase
720	 67.04	0	804286..805080	-	264	115350776	-	Bamb_0722	-	YheO domain-containing protein
721	 73.73	+1	805077..806039	-	320	115350777	-	Bamb_0723	-	ornithine cyclodeaminase/mu-crystallin
722	 67.31	0	806420..807199	+	259	115350778	-	Bamb_0724	-	extracellular solute-binding protein
723	 72.45	+1	807267..808511	+	414	115350779	-	Bamb_0725	-	D-amino-acid dehydrogenase
724	 67.84	0	808717..809142	+	141	115350780	-	Bamb_0726	-	hypothetical protein
725	 70.93	0	809186..809701	+	171	115350781	-	Bamb_0727	-	ECF subfamily RNA polymerase sigma-24 factor
726	 73.16	+1	809698..810483	+	261	115350782	-	Bamb_0728	-	putative transmembrane anti-sigma factor
727	 69.98	0	810512..810934	+	140	115350783	-	Bamb_0729	-	hypothetical protein
728	 69.19	0	810931..811563	+	210	115350784	-	Bamb_0730	-	hypothetical protein
729	 71.18	0	811608..812117	+	169	115350785	-	Bamb_0731	-	hypothetical protein
730	 61.22	-1	812490..812783	+	97	115350786	groES	Bamb_0732	-	co-chaperonin GroES
731	 62.71	0	812830..814470	+	546	115350787	groEL	Bamb_0733	-	chaperonin GroEL
732	 69.78	0	814641..815507	-	288	115350788	-	Bamb_0734	-	phosphomethylpyrimidine kinase type-1
733	 57.75	-2	815722..815934	+	70	115350789	-	Bamb_0735	-	rubredoxin-type Fe(Cys)4 protein
734	 75.34	+1	816040..817377	+	445	115350790	-	Bamb_0736	-	hypothetical protein
735	 64.25	0	817560..818138	+	192	115350791	-	Bamb_0737	-	hypothetical protein
736	 68.00	0	818135..818584	+	149	115350792	-	Bamb_0738	-	Holliday junction resolvase-like protein
737	 74.03	+1	818571..819086	+	171	115350793	-	Bamb_0739	-	pyrimidine regulatory protein PyrR
738	 66.86	0	819161..820192	+	343	115350794	pyrB	Bamb_0740	-	aspartate carbamoyltransferase catalytic subunit
739	 71.72	+1	820254..821540	+	428	115350795	-	Bamb_0741	-	dihydroorotase
740	 70.16	0	821560..822417	+	285	115350796	-	Bamb_0742	-	phospholipid/glycerol acyltransferase
741	 68.69	0	822449..823288	-	279	115350797	apaH	Bamb_0743	-	diadenosine tetraphosphatase
742	 57.09	-2	823749..824531	+	260	115350798	-	Bamb_0744	-	ABC-2 type transporter
743	 60.80	-1	824542..825291	+	249	115350799	-	Bamb_0745	-	ABC transporter related
744	 54.58	-2	825948..826220	+	90	115350800	-	Bamb_0746	-	hypothetical protein
745	 54.59	-2	826458..827393	+	311	115350801	-	Bamb_0747	-	NAD-dependent epimerase/dehydratase
746	 54.76	-2	827480..828823	+	447	115350802	-	Bamb_0748	-	FkbM family methyltransferase
747	 53.35	-2	829174..831021	+	615	115350803	-	Bamb_0749	-	hypothetical protein
748	 54.01	-2	831404..832264	+	286	115350804	-	Bamb_0750	-	hypothetical protein
749	 61.86	-1	833080..834141	+	353	115350805	-	Bamb_0751	-	dTDP-glucose 4,6-dehydratase
750	 60.74	-1	834153..835046	+	297	115350806	-	Bamb_0752	-	glucose-1-phosphate thymidylyltransferase
751	 59.60	-1	835031..835582	+	183	115350807	-	Bamb_0753	-	dTDP-4-dehydrorhamnose 3,5-epimerase
752	 63.66	0	835579..836475	+	298	115350808	-	Bamb_0754	-	dTDP-4-dehydrorhamnose reductase
753	 62.31	-1	836693..838138	+	481	115350809	-	Bamb_0755	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
754	 60.24	-1	838208..838456	+	82	115350810	-	Bamb_0756	-	hypothetical protein
755	 61.40	-1	838456..839784	+	442	115350811	-	Bamb_0757	-	methyltransferase type 11
756	 60.52	-1	839784..843509	+	1241	115350812	-	Bamb_0758	-	glycosyl transferase, group 1
757	 60.04	-1	843522..844562	+	346	115350813	-	Bamb_0759	-	GDP-mannose 4,6-dehydratase
758	 63.29	0	844540..845457	+	305	115350814	-	Bamb_0760	-	NAD-dependent epimerase/dehydratase
759	 63.90	0	845731..846780	+	349	115350815	-	Bamb_0761	-	glycosyl transferase, group 1
760	 63.67	0	846777..848045	+	422	115350816	-	Bamb_0762	-	glycosyl transferase, group 1
761	 69.37	0	848045..849007	+	320	115350817	-	Bamb_0763	-	NAD-dependent epimerase/dehydratase
762	 64.90	0	849013..850029	+	338	115350818	-	Bamb_0764	-	glycosyl transferase family protein
763	 63.50	0	850042..851934	+	630	115350819	-	Bamb_0765	-	polysaccharide biosynthesis protein CapD
764	 61.64	-1	852500..854866	+	788	115350820	-	Bamb_0766	-	curculin domain-containing protein
765	 62.69	0	854931..856037	-	368	115350821	-	Bamb_0767	-	glycosyl transferase family protein
766	 67.55	0	856065..857087	-	340	115350822	-	Bamb_0768	-	UDP-glucose 4-epimerase
767	 69.83	0	857102..858238	-	378	115350823	-	Bamb_0769	-	glycosyl transferase, group 1
768	 69.82	0	858300..859124	-	274	115350824	-	Bamb_0770	-	glycosyl transferase family protein
769	 67.54	0	859121..860377	-	418	115350825	-	Bamb_0771	-	membrane protein
770	 66.94	0	860551..862014	+	487	115350826	-	Bamb_0772	-	phosphomannomutase
771	 71.69	+1	862189..863184	+	331	115350827	-	Bamb_0773	-	lipopolysaccharide heptosyltransferase I
772	 67.68	0	863246..864130	+	294	115350828	-	Bamb_0774	-	hypothetical protein
773	 73.76	+1	864168..865535	+	455	115350829	-	Bamb_0775	-	3-deoxy-D-manno-octulosonic-acid transferase
774	 65.12	0	865596..866243	-	215	115350830	-	Bamb_0776	-	urease accessory protein UreG
775	 71.37	+1	866258..866938	-	226	115350831	-	Bamb_0777	-	urease accessory protein UreF
776	 70.61	0	866925..867533	-	202	115350832	ureE	Bamb_0778	-	urease accessory protein UreE
777	 67.55	0	867551..869257	-	568	115350833	ureC	Bamb_0779	-	urease subunit alpha
778	 69.61	0	869287..869592	-	101	115350834	ureB	Bamb_0780	-	urease subunit beta
779	 65.68	0	869607..869909	-	100	115350835	ureA	Bamb_0781	-	urease subunit gamma
780	 72.60	+1	870150..871025	-	291	115350836	-	Bamb_0782	-	urease accessory protein UreD
781	 68.98	0	871254..871946	-	230	115350837	-	Bamb_0783	-	ABC transporter related
782	 67.25	0	871951..872808	-	285	115350838	-	Bamb_0784	-	ABC transporter related
783	 67.59	0	872805..873989	-	394	115350839	-	Bamb_0785	-	inner-membrane translocator
784	 70.49	0	873991..875610	-	539	115350840	-	Bamb_0786	-	inner-membrane translocator
785	 64.37	0	875752..877059	-	435	115350841	-	Bamb_0787	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
786	 66.05	0	877450..877773	-	107	115350842	-	Bamb_0788	-	rhodanese domain-containing protein
787	 64.69	0	877785..878441	-	218	115350843	-	Bamb_0789	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
788	 65.89	0	878546..878803	-	85	115350844	-	Bamb_0790	-	hypothetical protein
789	 67.74	0	878876..880267	-	463	115350845	-	Bamb_0791	-	coproporphyrinogen III oxidase
790	 75.79	+2	880439..880756	+	105	115350846	-	Bamb_0792	-	hypothetical protein
791	 65.66	0	880891..881484	+	197	115350847	-	Bamb_0793	-	hypothetical protein
792	 65.34	0	881565..882395	+	276	115350848	-	Bamb_0794	-	undecaprenyl pyrophosphate phosphatase
793	 70.31	0	882511..883278	-	255	115350849	trmB	Bamb_0795	-	tRNA (guanine-N(7))-methyltransferase
794	 60.00	-1	883778..884122	+	114	115350850	-	Bamb_0796	-	protein of unknown function DUF861, cupin_3
795	 64.79	0	884707..884919	-	70	115350851	-	Bamb_0797	-	ribosomal protein S21
796	 63.16	0	885211..885495	-	94	115350852	-	Bamb_0798	-	hypothetical protein
797	 61.51	-1	885604..885855	+	83	115350853	-	Bamb_0799	-	hypothetical protein
798	 68.56	0	885972..887132	+	386	115350854	-	Bamb_0800	-	mandelate racemase/muconate lactonizing protein
799	 68.78	0	887137..887892	-	251	115350855	-	Bamb_0801	-	DeoR family transcriptional regulator
800	 66.17	0	887974..888579	+	201	115350856	-	Bamb_0802	-	nucleoside diphosphate pyrophosphatase
801	 70.92	0	888731..889552	+	273	115350857	-	Bamb_0803	-	silent information regulator protein Sir2
802	 68.65	0	889587..890798	-	403	115350858	-	Bamb_0804	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
803	 66.18	0	891182..891595	+	137	115350859	-	Bamb_0805	-	CrcB protein
804	 66.67	0	891620..891970	+	116	115350860	-	Bamb_0806	-	hypothetical protein
805	 66.84	0	891981..892544	-	187	115350861	-	Bamb_0807	-	protein of unknown function YGGT
806	 74.84	+1	892621..893550	-	309	115350862	-	Bamb_0808	-	NADP oxidoreductase, coenzyme F420-dependent
807	 66.12	0	893987..894352	+	121	115350863	-	Bamb_0809	-	hypothetical protein
808	 70.68	0	894456..895127	-	223	115350864	-	Bamb_0810	-	lysine exporter protein LysE/YggA
809	 68.27	0	895162..896718	-	518	115350865	-	Bamb_0811	-	UbiD family decarboxylase
810	 69.97	0	897315..898433	+	372	115350866	-	Bamb_0812	-	lytic transglycosylase, catalytic
66.92	MEAN

4.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.