version 1.0
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545 3213 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 551 65.96 0 619975..620397 + 140 115350607 - Bamb_0553 - hypothetical protein 552 70.32 0 620502..621350 - 282 115350608 - Bamb_0554 - RpiR family transcriptional regulator 553 68.93 0 621643..623499 + 618 115350609 - Bamb_0555 - phosphogluconate dehydratase 554 69.54 0 623519..624145 + 208 115350610 - Bamb_0556 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 555 64.98 0 624365..625726 + 453 115350611 - Bamb_0557 - gluconate transporter 556 63.29 0 625741..626244 + 167 115350612 - Bamb_0558 - carbohydrate kinase 557 71.14 0 626315..626962 - 215 115350613 - Bamb_0559 - TetR family transcriptional regulator 558 68.42 0 627227..628648 + 473 115350614 - Bamb_0560 - FAD dependent oxidoreductase 559 65.73 0 628764..630152 - 462 115350615 - Bamb_0561 - adenylosuccinate lyase 560 69.29 0 630466..631419 + 317 115350616 - Bamb_0562 - LysR family transcriptional regulator 561 65.42 0 631685..632971 + 428 115350617 - Bamb_0563 - Glu/Leu/Phe/Val dehydrogenase, C terminal 562 62.19 -1 633236..634129 + 297 115350618 - Bamb_0564 - extracellular solute-binding protein 563 63.83 0 634214..634954 + 246 115350619 - Bamb_0565 - polar amino acid ABC transporter, inner membrane subunit 564 63.57 0 634954..635631 + 225 115350620 - Bamb_0566 - polar amino acid ABC transporter, inner membrane subunit 565 61.16 -1 635628..636353 + 241 115350621 - Bamb_0567 - ABC transporter related 566 71.30 +1 636465..641777 - 1770 115350622 - Bamb_0568 - outer membrane autotransporter 567 66.01 0 642367..643284 - 305 115350623 - Bamb_0569 - glutamine amidotransferase, class-II 568 68.73 0 643487..644551 + 354 115350624 - Bamb_0570 - dihydroorotase 569 63.59 0 645108..645530 - 140 115350625 - Bamb_0571 - OsmC family protein 570 76.47 +2 646008..646313 - 101 115350626 - Bamb_0572 - hypothetical protein 571 58.04 -2 646627..647055 + 142 115350627 rplM Bamb_0573 - 50S ribosomal protein L13 572 60.56 -1 647067..647459 + 130 115350628 rpsI Bamb_0574 - 30S ribosomal protein S9 573 60.22 -1 647664..648035 + 123 115350629 - Bamb_0575 - iron-sulfur cluster insertion protein ErpA 574 70.93 0 648144..649292 - 382 115350630 anmK Bamb_0576 - anhydro-N-acetylmuramic acid kinase 575 65.38 0 649435..650676 + 413 115350631 - Bamb_0577 - tyrosyl-tRNA synthetase 576 71.24 +1 650673..651131 + 152 115350632 - Bamb_0578 - D-tyrosyl-tRNA deacylase 577 66.97 0 651155..651817 + 220 115350633 - Bamb_0579 - phosphoglycerate mutase 578 71.64 +1 651946..652890 - 314 115350634 - Bamb_0580 - hypothetical protein 579 68.82 0 652915..653982 - 355 115350635 ruvB Bamb_0581 - Holliday junction DNA helicase B 580 67.01 0 654103..654684 - 193 115350636 ruvA Bamb_0582 - Holliday junction DNA helicase motor protein 581 71.92 +1 654838..655389 - 183 115350637 ruvC Bamb_0583 - Holliday junction resolvase 582 66.16 0 655541..657106 - 521 115350638 purH Bamb_0584 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 583 58.55 -1 657152..657385 - 77 115350639 - Bamb_0585 - DNA-binding protein Fis 584 66.10 0 657382..658449 - 355 115350640 - Bamb_0586 - nifR3 family TIM-barrel protein 585 72.43 +1 658609..659787 - 392 115350641 - Bamb_0587 - hypothetical protein 586 70.61 0 659855..661249 - 464 115350642 - Bamb_0588 - peptidase M24 587 63.58 0 661435..662049 + 204 115350643 - Bamb_0589 - glutathione S-transferase domain-containing protein 588 66.60 0 662155..663774 - 539 115350644 - Bamb_0590 - glutamate synthase (NADPH) 589 66.58 0 663887..665041 - 384 115350645 trmU Bamb_0591 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 590 69.02 0 665038..665547 - 169 115350646 - Bamb_0592 - NUDIX hydrolase 591 64.79 0 665559..665984 - 141 115350647 - Bamb_0593 - hypothetical protein 592 74.05 +1 665981..666901 - 306 115350648 - Bamb_0594 - LysR family transcriptional regulator 593 71.65 +1 666983..667906 + 307 115350649 - Bamb_0595 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 594 70.89 0 667989..668675 - 228 115350650 - Bamb_0596 - helix-turn-helix, type 11 domain-containing protein 595 63.99 0 668749..669159 - 136 115350651 - Bamb_0597 - glyoxalase/bleomycin resistance protein/dioxygenase 596 71.13 0 669455..670753 - 432 115350652 - Bamb_0598 - putative RNA methylase 597 69.82 0 670920..673043 - 707 115350653 - Bamb_0599 - site-specific recombinase-like protein 598 70.45 0 673028..673318 - 96 115350654 - Bamb_0600 - hypothetical protein 599 73.80 +1 673545..674273 - 242 115350655 - Bamb_0601 - hypothetical protein 600 66.98 0 674270..675889 - 539 115350656 - Bamb_0602 - hypothetical protein 601 65.08 0 675882..676511 - 209 115350657 - Bamb_0603 - paraquat-inducible protein A 602 68.48 0 676508..677170 - 220 115350658 - Bamb_0604 - paraquat-inducible protein A 603 63.81 0 677429..677989 + 186 115350659 - Bamb_0605 - cytochrome B561 604 64.35 0 677998..678558 + 186 115350660 - Bamb_0606 - YceI family protein 605 62.41 -1 678618..679205 + 195 115350661 - Bamb_0607 - YceI family protein 606 68.86 0 679362..680639 + 425 115350662 - Bamb_0608 - major facilitator transporter 607 63.20 0 680738..681688 - 316 115350663 secF Bamb_0609 - preprotein translocase subunit SecF 608 67.26 0 681707..683728 - 673 115350664 secD Bamb_0610 - preprotein translocase subunit SecD 609 60.80 -1 683847..684170 - 107 115350665 yajC Bamb_0611 - preprotein translocase subunit YajC 610 65.40 0 684417..685604 - 395 115350666 tgt Bamb_0612 - queuine tRNA-ribosyltransferase 611 69.66 0 685764..686831 - 355 115350667 queA Bamb_0613 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 612 71.84 +1 686999..689356 + 785 115350668 - Bamb_0614 - ATP-dependent DNA helicase RecG 613 65.42 0 689493..690452 + 319 115350669 - Bamb_0615 - LysR family transcriptional regulator 614 67.99 0 690886..693072 + 728 115350670 - Bamb_0616 - catalase/peroxidase HPI 615 74.14 +1 693177..693350 + 57 115350671 - Bamb_0617 - hypothetical protein 616 63.60 0 693468..693956 + 162 115350672 - Bamb_0618 - Ferritin, Dps family protein 617 65.98 0 694237..695109 + 290 115350673 ubiA Bamb_0619 - 4-hydroxybenzoate octaprenyltransferase 618 71.96 +1 695201..696013 - 270 115350674 - Bamb_0620 - pyrroline-5-carboxylate reductase 619 70.63 0 696064..696870 - 268 115350675 - Bamb_0621 - hypothetical protein 620 68.46 0 696897..698123 - 408 115350676 glcF Bamb_0622 - glycolate oxidase iron-sulfur subunit 621 71.35 +1 698358..699446 - 362 115350677 glcE Bamb_0623 - glycolate oxidase FAD binding subunit 622 67.94 0 699631..701124 - 497 115350678 - Bamb_0624 - FAD linked oxidase domain-containing protein 623 69.15 0 701162..702571 - 469 115350679 - Bamb_0625 - FAD linked oxidase domain-containing protein 624 71.38 +1 702712..703263 + 183 115350680 - Bamb_0626 - ATP--cobalamin adenosyltransferase 625 66.91 0 703358..704566 + 402 115350681 - Bamb_0627 - globin 626 62.05 -1 704645..705034 - 129 115350682 - Bamb_0628 - PilT domain-containing protein 627 62.22 -1 705031..705300 - 89 115350683 - Bamb_0629 - prevent-host-death family protein 628 66.39 0 705424..706497 - 357 115350684 - Bamb_0630 - phospho-2-dehydro-3-deoxyheptonate aldolase 629 57.09 -2 706600..706881 - 93 115350685 - Bamb_0631 - hypothetical protein 630 68.49 0 706943..708481 - 512 115350686 - Bamb_0632 - peptidase U62, modulator of DNA gyrase 631 69.57 0 708503..709330 - 275 115350687 - Bamb_0633 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 632 71.50 +1 709382..713578 - 1398 115350688 - Bamb_0634 - hypothetical protein 633 71.15 0 713717..716596 + 959 115350689 - Bamb_0635 - (glutamate--ammonia-ligase) adenylyltransferase 634 70.02 0 716697..718994 + 765 115350690 - Bamb_0636 - carbohydrate-binding family V/XII protein 635 71.21 +1 719105..720754 - 549 115350691 - Bamb_0637 - DNA repair protein RecN 636 67.22 0 720774..721676 - 300 115350692 ppnK Bamb_0638 - inorganic polyphosphate/ATP-NAD kinase 637 66.08 0 721807..722829 + 340 115350693 hrcA Bamb_0639 - heat-inducible transcription repressor 638 67.98 0 722967..724031 + 354 115350694 hemH Bamb_0640 - ferrochelatase 639 68.57 0 724061..724534 + 157 115350695 - Bamb_0641 - RNA-binding S4 domain-containing protein 640 59.88 -1 724506..724667 - 53 115350696 - Bamb_0642 - hypothetical protein 641 57.53 -2 724727..724945 - 72 115350697 - Bamb_0643 - hypothetical protein 642 67.40 0 725021..725566 + 181 115350698 - Bamb_0644 - GrpE protein 643 70.98 0 725577..726017 + 146 115350699 - Bamb_0645 - hypothetical protein 644 63.95 0 726164..728116 + 650 115350700 - Bamb_0646 - molecular chaperone DnaK 645 65.88 0 728370..729506 + 378 115350701 - Bamb_0647 - chaperone protein DnaJ 646 69.48 0 729511..731430 + 639 115350702 - Bamb_0648 - anthranilate synthase component I/chorismate-binding protein 647 67.16 0 731582..732397 - 271 115350703 panB Bamb_0649 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 648 66.81 0 732440..733126 - 228 115350704 - Bamb_0650 - deoxynucleoside kinase 649 66.67 0 733123..733665 - 180 115350705 - Bamb_0651 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 650 67.75 0 733701..735086 - 461 115350706 - Bamb_0652 - poly(A) polymerase 66.92 MEAN 4.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0