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Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545 3213 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 496 60.56 -1 563642..564853 + 403 115350552 - Bamb_0498 - ribonucleotide-diphosphate reductase subunit beta 497 59.94 -1 564937..565263 + 108 115350553 - Bamb_0499 - hypothetical protein 498 63.50 0 565292..565954 + 220 115350554 - Bamb_0500 - hypothetical protein 499 71.10 0 566184..566657 - 157 115350555 - Bamb_0501 - 17 kDa surface antigen 500 64.28 0 566677..567639 - 320 115350556 - Bamb_0502 - ribokinase-like domain-containing protein 501 67.46 0 567709..568212 - 167 115350557 - Bamb_0503 - redoxin domain-containing protein 502 72.46 +1 568285..569700 - 471 115350558 - Bamb_0504 - Zinc finger-domain-containing protein 503 68.00 0 569746..570648 - 300 115350559 prmA Bamb_0505 - ribosomal protein L11 methyltransferase 504 64.11 0 570651..572018 - 455 115350560 - Bamb_0506 - acetyl-CoA carboxylase biotin carboxylase subunit 505 66.46 0 572104..572577 - 157 115350561 - Bamb_0507 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 506 65.34 0 572644..573096 - 150 115350562 - Bamb_0508 - 3-dehydroquinate dehydratase 507 65.23 0 573291..573845 - 184 115350563 - Bamb_0509 - redoxin domain-containing protein 508 67.60 0 573853..574497 - 214 115350564 - Bamb_0510 - hypothetical protein 509 68.11 0 574721..576106 + 461 115350565 - Bamb_0511 - UDP-N-acetylmuramate 510 66.32 0 576103..576672 + 189 115350566 - Bamb_0512 - hypothetical protein 511 69.11 0 576754..578844 + 696 115350567 - Bamb_0513 - ribonuclease II 512 72.32 +1 578841..579707 + 288 115350568 aroE Bamb_0514 - shikimate 5-dehydrogenase 513 67.62 0 579722..580459 + 245 115350569 mtgA Bamb_0515 - monofunctional biosynthetic peptidoglycan transglycosylase 514 64.87 0 580894..582504 + 536 115350570 - Bamb_0516 - peptidase S10, serine carboxypeptidase 515 70.68 0 582589..582987 + 132 115350571 - Bamb_0517 - hypothetical protein 516 69.56 0 583323..584222 + 299 115350572 - Bamb_0518 - IclR family transcriptional regulator 517 72.51 +1 584219..585244 + 341 115350573 - Bamb_0519 - 2-keto-3-deoxy-galactonokinase 518 74.04 +1 585268..585945 + 225 115350574 - Bamb_0520 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 519 72.16 +1 585942..586724 + 260 115350575 - Bamb_0521 - short chain dehydrogenase 520 65.76 0 586827..587822 + 331 115350576 - Bamb_0522 - periplasmic binding protein/LacI transcriptional regulator 521 68.65 0 587939..589402 + 487 115350577 araG Bamb_0523 - L-arabinose transporter ATP-binding protein 522 65.39 0 589493..590509 + 338 115350578 araH Bamb_0524 - L-arabinose transporter permease protein 523 70.71 0 590533..591348 + 271 115350579 - Bamb_0525 - short-chain dehydrogenase/reductase SDR 524 72.88 +1 591429..592490 + 353 115350580 - Bamb_0526 - aldose 1-epimerase 525 66.79 0 592530..593357 + 275 115350581 pyrF Bamb_0527 - orotidine 5'-phosphate decarboxylase 526 65.72 0 593567..594625 + 352 115350582 - Bamb_0528 - hypothetical protein 527 68.65 0 594690..595244 - 184 115350583 - Bamb_0529 - CinA domain-containing protein 528 67.95 0 595223..595768 - 181 115350584 - Bamb_0530 - phosphatidylglycerophosphatase A 529 72.87 +1 595758..596756 - 332 115350585 - Bamb_0531 - thiamine monophosphate kinase 530 66.19 0 596936..599236 + 766 115350586 - Bamb_0532 - malic enzyme 531 65.28 0 599614..600045 + 143 115350587 - Bamb_0533 - guanine-specific ribonuclease N1 and T1 532 64.36 0 600062..600625 + 187 115350588 - Bamb_0534 - hypothetical protein 533 73.96 +1 600723..601490 - 255 115350589 - Bamb_0535 - hypothetical protein 534 64.99 0 601508..601924 - 138 115350590 - Bamb_0536 - glyoxalase/bleomycin resistance protein/dioxygenase 535 69.35 0 602118..602975 - 285 115350591 - Bamb_0537 - spermidine synthase 536 66.62 0 603192..605264 + 690 115350592 - Bamb_0538 - transketolase 537 63.60 0 605353..606363 + 336 115350593 - Bamb_0539 - glyceraldehyde-3-phosphate dehydrogenase, type I 538 68.89 0 606442..607161 - 239 115350594 - Bamb_0540 - GntR domain-containing protein 539 65.23 0 607407..608729 + 440 115350595 - Bamb_0541 - C4-dicarboxylate transporter DctA 540 69.94 0 608834..609841 + 335 115350596 - Bamb_0542 - allantoicase 541 70.90 0 609838..610380 + 180 115350597 - Bamb_0543 - ureidoglycolate hydrolase 542 61.07 -1 610578..611006 - 142 115350598 - Bamb_0544 - ferric uptake regulator family protein 543 72.93 +1 611148..611945 + 265 115350599 - Bamb_0545 - SmpA/OmlA domain-containing protein 544 68.30 0 612011..612808 + 265 115350600 - Bamb_0546 - dihydrodipicolinate reductase 545 71.60 +1 612828..613496 + 222 115350601 - Bamb_0547 - MotA/TolQ/ExbB proton channel 546 72.37 +1 613519..613974 + 151 115350602 - Bamb_0548 - biopolymer transport protein ExbD/TolR 547 66.20 0 614255..616849 + 864 115350603 leuS Bamb_0549 - leucyl-tRNA synthetase 548 67.75 0 616888..617439 + 183 115350604 - Bamb_0550 - rare lipoprotein B 549 70.68 0 617458..618552 + 364 115350605 holA Bamb_0551 - DNA polymerase III subunit delta 550 68.32 0 618686..619957 + 423 115350606 proA Bamb_0552 - gamma-glutamyl phosphate reductase 551 65.96 0 619975..620397 + 140 115350607 - Bamb_0553 - hypothetical protein 552 70.32 0 620502..621350 - 282 115350608 - Bamb_0554 - RpiR family transcriptional regulator 553 68.93 0 621643..623499 + 618 115350609 - Bamb_0555 - phosphogluconate dehydratase 554 69.54 0 623519..624145 + 208 115350610 - Bamb_0556 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 555 64.98 0 624365..625726 + 453 115350611 - Bamb_0557 - gluconate transporter 556 63.29 0 625741..626244 + 167 115350612 - Bamb_0558 - carbohydrate kinase 557 71.14 0 626315..626962 - 215 115350613 - Bamb_0559 - TetR family transcriptional regulator 558 68.42 0 627227..628648 + 473 115350614 - Bamb_0560 - FAD dependent oxidoreductase 559 65.73 0 628764..630152 - 462 115350615 - Bamb_0561 - adenylosuccinate lyase 560 69.29 0 630466..631419 + 317 115350616 - Bamb_0562 - LysR family transcriptional regulator 561 65.42 0 631685..632971 + 428 115350617 - Bamb_0563 - Glu/Leu/Phe/Val dehydrogenase, C terminal 562 62.19 -1 633236..634129 + 297 115350618 - Bamb_0564 - extracellular solute-binding protein 563 63.83 0 634214..634954 + 246 115350619 - Bamb_0565 - polar amino acid ABC transporter, inner membrane subunit 564 63.57 0 634954..635631 + 225 115350620 - Bamb_0566 - polar amino acid ABC transporter, inner membrane subunit 565 61.16 -1 635628..636353 + 241 115350621 - Bamb_0567 - ABC transporter related 566 71.30 +1 636465..641777 - 1770 115350622 - Bamb_0568 - outer membrane autotransporter 567 66.01 0 642367..643284 - 305 115350623 - Bamb_0569 - glutamine amidotransferase, class-II 568 68.73 0 643487..644551 + 354 115350624 - Bamb_0570 - dihydroorotase 569 63.59 0 645108..645530 - 140 115350625 - Bamb_0571 - OsmC family protein 570 76.47 +2 646008..646313 - 101 115350626 - Bamb_0572 - hypothetical protein 571 58.04 -2 646627..647055 + 142 115350627 rplM Bamb_0573 - 50S ribosomal protein L13 572 60.56 -1 647067..647459 + 130 115350628 rpsI Bamb_0574 - 30S ribosomal protein S9 573 60.22 -1 647664..648035 + 123 115350629 - Bamb_0575 - iron-sulfur cluster insertion protein ErpA 574 70.93 0 648144..649292 - 382 115350630 anmK Bamb_0576 - anhydro-N-acetylmuramic acid kinase 575 65.38 0 649435..650676 + 413 115350631 - Bamb_0577 - tyrosyl-tRNA synthetase 576 71.24 +1 650673..651131 + 152 115350632 - Bamb_0578 - D-tyrosyl-tRNA deacylase 577 66.97 0 651155..651817 + 220 115350633 - Bamb_0579 - phosphoglycerate mutase 578 71.64 +1 651946..652890 - 314 115350634 - Bamb_0580 - hypothetical protein 579 68.82 0 652915..653982 - 355 115350635 ruvB Bamb_0581 - Holliday junction DNA helicase B 580 67.01 0 654103..654684 - 193 115350636 ruvA Bamb_0582 - Holliday junction DNA helicase motor protein 581 71.92 +1 654838..655389 - 183 115350637 ruvC Bamb_0583 - Holliday junction resolvase 582 66.16 0 655541..657106 - 521 115350638 purH Bamb_0584 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 583 58.55 -1 657152..657385 - 77 115350639 - Bamb_0585 - DNA-binding protein Fis 584 66.10 0 657382..658449 - 355 115350640 - Bamb_0586 - nifR3 family TIM-barrel protein 585 72.43 +1 658609..659787 - 392 115350641 - Bamb_0587 - hypothetical protein 586 70.61 0 659855..661249 - 464 115350642 - Bamb_0588 - peptidase M24 587 63.58 0 661435..662049 + 204 115350643 - Bamb_0589 - glutathione S-transferase domain-containing protein 588 66.60 0 662155..663774 - 539 115350644 - Bamb_0590 - glutamate synthase (NADPH) 589 66.58 0 663887..665041 - 384 115350645 trmU Bamb_0591 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 590 69.02 0 665038..665547 - 169 115350646 - Bamb_0592 - NUDIX hydrolase 591 64.79 0 665559..665984 - 141 115350647 - Bamb_0593 - hypothetical protein 592 74.05 +1 665981..666901 - 306 115350648 - Bamb_0594 - LysR family transcriptional regulator 593 71.65 +1 666983..667906 + 307 115350649 - Bamb_0595 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 594 70.89 0 667989..668675 - 228 115350650 - Bamb_0596 - helix-turn-helix, type 11 domain-containing protein 595 63.99 0 668749..669159 - 136 115350651 - Bamb_0597 - glyoxalase/bleomycin resistance protein/dioxygenase 66.92 MEAN 4.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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