IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.92   STD DEV: 4.28
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545
3213 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.53	0	203..1780	+	525	115350057	dnaA	Bamb_0001	-	chromosomal replication initiation protein
2	 63.41	0	1949..3055	+	368	115350058	-	Bamb_0002	-	DNA polymerase III subunit beta
3	 62.18	-1	3262..5736	+	824	115350059	gyrB	Bamb_0003	-	DNA gyrase subunit B
4	 55.77	-2	6098..8842	+	914	115350060	-	Bamb_0004	-	GTPase subunit of restriction endonuclease-like protein
5	 56.40	-2	8846..11134	+	762	115350061	-	Bamb_0005	-	hypothetical protein
6	 64.78	0	17028..17558	-	176	115350062	-	Bamb_0006	-	cytochrome B561
7	 70.15	0	17558..18649	-	363	115350063	-	Bamb_0007	-	catalase domain-containing protein
8	 68.40	0	18807..19325	+	172	115350064	-	Bamb_0008	-	ECF subfamily RNA polymerase sigma-24 factor
9	 66.14	0	19322..20083	+	253	115350065	-	Bamb_0009	-	putative transmembrane anti-sigma factor
10	 57.72	-2	20554..20877	-	107	115350066	-	Bamb_0010	-	hypothetical protein
11	 59.73	-1	21114..21560	+	148	115350067	-	Bamb_0011	-	hypothetical protein
12	 67.23	0	22316..23197	-	293	115350068	-	Bamb_0012	-	RNA polymerase sigma factor SigJ
13	 66.04	0	23197..23673	-	158	115350069	-	Bamb_0013	-	alkylhydroperoxidase
14	 61.11	-1	23905..24246	+	113	115350070	-	Bamb_0014	-	hypothetical protein
15	 66.83	0	24236..25480	+	414	115350071	-	Bamb_0015	-	hypothetical protein
16	 68.05	0	25464..26477	+	337	115350072	-	Bamb_0016	-	hypothetical protein
17	 69.64	0	26774..27076	+	100	115350073	-	Bamb_0017	-	hypothetical protein
18	 68.27	0	27314..27688	+	124	115350074	-	Bamb_0018	-	hypothetical protein
19	 68.28	0	27912..30947	-	1011	115350075	-	Bamb_0019	-	type III restriction enzyme, res subunit
20	 67.76	0	30947..32965	-	672	115350076	-	Bamb_0020	-	site-specific DNA-methyltransferase (adenine-specific)
21	 62.93	0	33326..34555	-	409	115350077	-	Bamb_0021	-	outer membrane protein (porin)-like protein
22	 66.81	0	34747..35424	-	225	115350078	-	Bamb_0022	-	two component transcriptional regulator
23	 71.20	0	35437..36804	-	455	115350079	-	Bamb_0023	-	periplasmic sensor signal transduction histidine kinase
24	 65.97	0	36878..37735	-	285	115350080	-	Bamb_0024	-	binding-protein-dependent transport systems inner membrane component
25	 66.29	0	37776..38573	-	265	115350081	-	Bamb_0025	-	ABC transporter related
26	 67.46	0	38695..39699	-	334	115350082	-	Bamb_0026	-	ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein
27	 69.22	0	39843..40625	-	260	115350083	-	Bamb_0027	-	flagellar biosynthetic protein FliR
28	 68.13	0	40654..40926	-	90	115350084	fliQ	Bamb_0028	-	flagellar biosynthesis protein FliQ
29	 66.01	0	40943..41704	-	253	115350085	fliP	Bamb_0029	-	flagellar biosynthesis protein FliP
30	 75.13	+1	41741..42307	-	188	115350086	-	Bamb_0030	-	flagellar biosynthesis protein, FliO
31	 67.90	0	42304..42789	-	161	115350087	-	Bamb_0031	-	flagellar motor switch protein FliN
32	 64.06	0	42782..43780	-	332	115350088	fliM	Bamb_0032	-	flagellar motor switch protein FliM
33	 67.04	0	43803..44339	-	178	115350089	fliL	Bamb_0033	-	flagellar basal body-associated protein FliL
34	 66.94	0	44513..45235	-	240	115350090	-	Bamb_0034	-	LrgB family protein
35	 75.26	+1	45249..45725	-	158	115350091	-	Bamb_0035	-	LrgA family protein
36	 69.69	0	45866..46792	+	308	115350092	-	Bamb_0036	-	LysR family transcriptional regulator
37	 67.50	0	46844..48406	-	520	115350093	-	Bamb_0037	-	EmrB/QacA family drug resistance transporter
38	 69.33	0	48582..49070	-	162	115350094	-	Bamb_0038	-	MarR family transcriptional regulator
39	 69.82	0	49246..49530	+	94	115350095	-	Bamb_0039	-	hypothetical protein
40	 72.55	+1	49812..51374	+	520	115350096	-	Bamb_0040	-	RND efflux system outer membrane lipoprotein
41	 72.37	+1	51405..52193	-	262	115350097	-	Bamb_0041	-	hypothetical protein
42	 69.43	0	52225..52731	-	168	115350098	-	Bamb_0042	-	general secretion pathway M protein
43	 73.45	+1	52728..54098	-	456	115350099	-	Bamb_0043	-	general secretion pathway protein L
44	 71.03	0	54123..55244	-	373	115350100	-	Bamb_0044	-	general secretion pathway protein K
45	 70.64	0	55247..55951	-	234	115350101	-	Bamb_0045	-	putative general secretion pathway protein J
46	 68.16	0	55929..56330	-	133	115350102	-	Bamb_0046	-	general secretion pathway protein I
47	 72.68	+1	56333..56881	-	182	115350103	-	Bamb_0047	-	general secretion pathway protein H
48	 62.91	0	56925..57377	-	150	115350104	-	Bamb_0048	-	general secretion pathway protein G
49	 70.80	0	57555..57965	+	136	115350105	-	Bamb_0049	-	general secretion pathway protein C
50	 68.47	0	57996..59213	-	405	115350106	-	Bamb_0050	-	general secretion pathway protein F
51	 68.67	0	59218..60717	-	499	115350107	-	Bamb_0051	-	general secretory pathway protein E
52	 67.18	0	60714..63047	-	777	115350108	-	Bamb_0052	-	general secretion pathway protein D
53	 61.88	-1	63387..63866	+	159	115350109	-	Bamb_0053	-	lytic transglycosylase, catalytic
54	 65.90	0	64066..65376	+	436	115350110	-	Bamb_0054	-	cobalamin synthesis protein, P47K
55	 61.29	-1	65512..65790	-	92	115350111	-	Bamb_0055	-	histone family protein DNA-binding protein
56	 71.52	+1	66181..68139	+	652	115350112	mnmC	Bamb_0056	-	5-methylaminomethyl-2-thiouridine methyltransferase
57	 60.00	-1	68442..68771	+	109	115350113	-	Bamb_0057	-	hypothetical protein
58	 64.86	0	68815..70029	+	404	115350114	-	Bamb_0058	-	sodium/hydrogen exchanger
59	 63.71	0	70044..71159	+	371	115350115	-	Bamb_0059	-	carboxylate-amine ligase
60	 56.51	-2	71169..71483	+	104	115350116	-	Bamb_0060	-	hypothetical protein
61	 67.14	0	71665..72303	+	212	115350117	-	Bamb_0061	-	MarR family transcriptional regulator
62	 70.60	0	72332..73042	+	236	115350118	-	Bamb_0062	-	glutamine amidotransferase
63	 69.90	0	73256..74368	+	370	115350119	-	Bamb_0063	-	NADH:flavin oxidoreductase/NADH oxidase
64	 61.82	-1	74549..75085	+	178	115350120	-	Bamb_0064	-	nuclear protein SET
65	 70.03	0	75176..76660	-	494	115350121	-	Bamb_0065	-	periplasmic sensor signal transduction histidine kinase
66	 66.23	0	76777..77469	-	230	115350122	-	Bamb_0066	-	two component transcriptional regulator
67	 59.39	-1	77562..77822	+	86	115350123	-	Bamb_0067	-	hypothetical protein
68	 62.78	0	77913..78221	-	102	115350124	phhB	Bamb_0068	-	pterin-4-alpha-carbinolamine dehydratase
69	 67.96	0	78400..79326	-	308	115350125	phhA	Bamb_0069	-	phenylalanine 4-monooxygenase
70	 66.87	0	79433..79918	+	161	115350126	-	Bamb_0070	-	AsnC family transcriptional regulator
71	 67.04	0	79973..80506	-	177	115350127	-	Bamb_0071	-	adenylate cyclase
72	 70.61	0	80702..81640	-	312	115350128	-	Bamb_0072	-	LysR family transcriptional regulator
73	 68.62	0	81776..83461	+	561	115350129	-	Bamb_0073	-	glucose-methanol-choline oxidoreductase
74	 64.74	0	83884..84663	+	259	115350130	-	Bamb_0074	-	ABC transporter related
75	 67.33	0	84660..85415	+	251	115350131	-	Bamb_0075	-	ABC transporter related
76	 64.25	0	85493..86692	+	399	115350132	-	Bamb_0076	-	extracellular ligand-binding receptor
77	 64.86	0	86812..87696	+	294	115350133	-	Bamb_0077	-	inner-membrane translocator
78	 67.38	0	87696..88670	+	324	115350134	-	Bamb_0078	-	inner-membrane translocator
79	 66.03	0	89193..89660	-	155	115350135	-	Bamb_0079	-	hypothetical protein
80	 66.32	0	89778..90935	+	385	115350136	-	Bamb_0080	-	extracellular ligand-binding receptor
81	 66.10	0	91137..92192	+	351	115350137	-	Bamb_0081	-	inner-membrane translocator
82	 67.28	0	92197..93981	+	594	115350138	-	Bamb_0082	-	ABC transporter related
83	 66.93	0	93981..94739	+	252	115350139	-	Bamb_0083	-	ABC transporter related
84	 64.64	0	95245..97215	+	656	115350140	-	Bamb_0084	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
85	 61.72	-1	97212..97898	+	228	115350141	-	Bamb_0085	-	methyltransferase GidB
86	 63.46	0	97950..98729	+	259	115350142	-	Bamb_0086	-	cobyrinic acid a,c-diamide synthase
87	 66.67	0	98737..99654	+	305	115350143	-	Bamb_0087	-	parB-like partition proteins
88	 66.75	0	99665..100798	+	377	115350144	-	Bamb_0088	-	citrate transporter
89	 58.28	-2	100817..101305	+	162	115350145	-	Bamb_0089	-	hypothetical protein
90	 65.56	0	101356..101898	+	180	115350146	-	Bamb_0090	-	F0F1-type ATP synthase subunit I-like protein
91	 60.90	-1	102009..102857	+	282	115350147	-	Bamb_0091	-	F0F1 ATP synthase subunit A
92	 58.89	-1	102933..103202	+	89	115350148	-	Bamb_0092	-	F0F1 ATP synthase subunit C
93	 63.48	0	103331..103801	+	156	115350149	-	Bamb_0093	-	F0F1 ATP synthase subunit B
94	 65.00	0	103804..104343	+	179	115350150	-	Bamb_0094	-	F0F1 ATP synthase subunit delta
95	 63.16	0	104388..105929	+	513	115350151	-	Bamb_0095	-	F0F1 ATP synthase subunit alpha
96	 62.21	-1	105999..106874	+	291	115350152	-	Bamb_0096	-	F0F1 ATP synthase subunit gamma
97	 61.36	-1	106941..108335	+	464	115350153	-	Bamb_0097	-	F0F1 ATP synthase subunit beta
98	 65.26	0	108580..109005	+	141	115350154	atpC	Bamb_0098	-	F0F1 ATP synthase subunit epsilon
99	 66.78	0	109263..110990	+	575	115350155	-	Bamb_0099	-	acyl-CoA synthetase
100	 65.44	0	111705..112517	-	270	115350156	-	Bamb_0100	-	prephenate dehydratase
66.92	MEAN

4.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.