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Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545 3213 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3114 69.28 0 3440084..3441115 - 343 115353170 - Bamb_3119 - serine/threonine protein kinase 3115 64.79 0 3441165..3441377 - 70 115353171 - Bamb_3120 - hypothetical protein 3116 65.12 0 3441663..3441920 + 85 115353172 - Bamb_3121 - hypothetical protein 3117 70.43 0 3442070..3442255 + 61 115353173 - Bamb_3122 - hypothetical protein 3118 70.52 0 3442379..3443260 + 293 115353174 - Bamb_3123 - hypothetical protein 3119 62.90 0 3443558..3443743 + 61 115353175 - Bamb_3124 - hypothetical protein 3120 65.42 0 3443864..3444907 - 347 115353176 - Bamb_3125 - aldo/keto reductase 3121 65.22 0 3445092..3445298 + 68 115353177 - Bamb_3126 - hypothetical protein 3122 66.93 0 3445516..3446289 - 257 115353178 - Bamb_3127 - phytanoyl-CoA dioxygenase 3123 72.51 +1 3446643..3446984 + 113 115353179 - Bamb_3128 - hypothetical protein 3124 65.40 0 3447095..3448282 - 395 115353180 - Bamb_3129 - S-adenosylmethionine synthetase 3125 65.88 0 3448548..3449432 + 294 115353181 - Bamb_3130 - lipid A biosynthesis lauroyl acyltransferase 3126 69.08 0 3449663..3450532 + 289 115353182 dapF Bamb_3131 - diaminopimelate epimerase 3127 70.93 0 3450546..3451295 + 249 115353183 - Bamb_3132 - hypothetical protein 3128 69.38 0 3451309..3452229 + 306 115353184 xerC Bamb_3133 - site-specific tyrosine recombinase XerC 3129 68.72 0 3452306..3453520 + 404 115353185 - Bamb_3134 - PUA domain-containing protein 3130 62.04 -1 3453626..3454792 + 388 115353186 - Bamb_3135 - cobalamin synthesis protein, P47K 3131 62.18 -1 3454850..3455206 + 118 115353187 - Bamb_3136 - hypothetical protein 3132 62.11 -1 3455283..3455699 + 138 115353188 - Bamb_3137 - TraR/DksA family transcriptional regulator 3133 66.48 0 3455935..3456471 + 178 115353189 - Bamb_3138 - ATP-dependent protease peptidase subunit 3134 64.21 0 3456482..3457825 + 447 115353190 hslU Bamb_3139 - ATP-dependent protease ATP-binding subunit 3135 67.40 0 3457944..3458486 - 180 115353191 - Bamb_3140 - response regulator receiver protein 3136 71.50 +1 3458500..3459906 - 468 115353192 - Bamb_3141 - periplasmic sensor signal transduction histidine kinase 3137 77.48 +2 3460058..3460279 + 73 115353193 - Bamb_3142 - hypothetical protein 3138 64.64 0 3460424..3461458 + 344 115353194 - Bamb_3143 - acetylglutamate kinase 3139 68.31 0 3461455..3462246 + 263 115353195 - Bamb_3144 - pyrimidine 5'-nucleotidase 3140 65.62 0 3462303..3462878 + 191 115353196 slmA Bamb_3145 - nucleoid occlusion protein 3141 69.90 0 3462947..3463813 - 288 115353197 - Bamb_3146 - hypothetical protein 3142 66.87 0 3463859..3465346 - 495 115353198 - Bamb_3147 - outer membrane efflux protein 3143 67.39 0 3465349..3466599 - 416 115353199 - Bamb_3148 - HlyD family type I secretion membrane fusion protein 3144 66.24 0 3466596..3468926 - 776 115353200 - Bamb_3149 - ABC transporter related 3145 60.90 -1 3469338..3472217 - 959 115353201 - Bamb_3150 - hypothetical protein 3146 66.67 0 3472325..3473056 - 243 115353202 - Bamb_3151 - OmpA/MotB domain-containing protein 3147 64.25 0 3473210..3485785 - 4191 115353203 - Bamb_3152 - YadA domain-containing protein 3148 58.42 -1 3485775..3486065 - 96 115353204 - Bamb_3153 - hypothetical protein 3149 65.88 0 3486671..3487816 + 381 115353205 metX Bamb_3154 - homoserine O-acetyltransferase 3150 64.70 0 3487813..3488421 + 202 115353206 - Bamb_3155 - methionine biosynthesis protein MetW 3151 68.28 0 3488539..3489960 + 473 115353207 - Bamb_3156 - major facilitator transporter 3152 71.88 +1 3489950..3490984 + 344 115353208 - Bamb_3157 - peptidase M48, Ste24p 3153 69.74 0 3491039..3491983 - 314 115353209 - Bamb_3158 - AraC family transcriptional regulator 3154 66.00 0 3492211..3493263 + 350 115353210 - Bamb_3159 - alcohol dehydrogenase 3155 61.50 -1 3493379..3494152 - 257 115353211 - Bamb_3160 - exodeoxyribonuclease III Xth 3156 65.36 0 3494203..3495042 - 279 115353212 - Bamb_3161 - hypothetical protein 3157 65.38 0 3495169..3496644 - 491 115353213 gatB Bamb_3162 - aspartyl/glutamyl-tRNA amidotransferase subunit B 3158 68.95 0 3496649..3498139 - 496 115353214 gatA Bamb_3163 - aspartyl/glutamyl-tRNA amidotransferase subunit A 3159 66.33 0 3498206..3498505 - 99 115353215 gatC Bamb_3164 - aspartyl/glutamyl-tRNA amidotransferase subunit C 3160 64.94 0 3498874..3499917 + 347 115353216 - Bamb_3165 - cell shape determining protein MreB 3161 71.06 0 3500057..3501127 + 356 115353217 - Bamb_3166 - rod shape-determining protein MreC 3162 67.64 0 3501124..3501636 + 170 115353218 - Bamb_3167 - rod shape-determining protein MreD 3163 68.19 0 3501731..3504025 + 764 115353219 - Bamb_3168 - peptidoglycan glycosyltransferase 3164 66.06 0 3504037..3505185 + 382 115353220 - Bamb_3169 - rod shape-determining protein RodA 3165 70.63 0 3505285..3506067 - 260 115353221 - Bamb_3170 - Sel1 domain-containing protein 3166 72.14 +1 3506064..3506849 - 261 115353222 - Bamb_3171 - 2-dehydro-3-deoxyglucarate aldolase 3167 65.56 0 3507116..3507568 - 150 115353223 - Bamb_3172 - putative 6-pyruvoyl tetrahydropterin synthase 3168 65.24 0 3507587..3508219 - 210 115353224 - Bamb_3173 - organic radical activating enzyme-like protein 3169 67.76 0 3508294..3509028 - 244 115353225 - Bamb_3174 - exsB protein 3170 66.67 0 3509517..3510218 - 233 115353226 - Bamb_3175 - response regulator receiver protein 3171 67.16 0 3510219..3512633 - 804 115353227 - Bamb_3176 - multi-sensor signal transduction histidine kinase 3172 64.81 0 3512623..3513216 - 197 115353228 - Bamb_3177 - hypothetical protein 3173 72.86 +1 3513213..3514601 - 462 115353229 - Bamb_3178 - sun protein 3174 67.25 0 3514778..3515635 - 285 115353230 - Bamb_3179 - heat shock protein HtpX 3175 67.76 0 3515736..3516377 - 213 115353231 - Bamb_3180 - lysine exporter protein LysE/YggA 3176 73.27 +1 3516488..3517471 - 327 115353232 fmt Bamb_3181 - methionyl-tRNA formyltransferase 3177 62.70 0 3517506..3518009 - 167 115353233 def Bamb_3182 - peptide deformylase 3178 74.39 +1 3518241..3519509 + 422 115353234 - Bamb_3183 - DNA protecting protein DprA 3179 66.67 0 3519546..3519926 + 126 115353235 - Bamb_3184 - thioredoxin domain-containing protein 3180 63.74 0 3520118..3522715 + 865 115353236 - Bamb_3185 - DNA topoisomerase III 3181 66.57 0 3522856..3523905 - 349 115353237 - Bamb_3186 - LysR family transcriptional regulator 3182 65.48 0 3524336..3525349 + 337 115353238 - Bamb_3187 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 3183 69.55 0 3525399..3526265 - 288 115353239 - Bamb_3188 - patatin 3184 64.69 0 3526274..3526678 - 134 115353240 - Bamb_3189 - hypothetical protein 3185 68.29 0 3527132..3528181 + 349 115353241 - Bamb_3190 - hypothetical protein 3186 72.52 +1 3528221..3528835 - 204 115353242 - Bamb_3191 - hypothetical protein 3187 68.53 0 3528917..3529720 + 267 115353243 - Bamb_3192 - alpha/beta hydrolase fold 3188 65.70 0 3529754..3531208 - 484 115353244 - Bamb_3193 - aldehyde dehydrogenase 3189 66.99 0 3531236..3532474 - 412 115353245 - Bamb_3194 - phosphonoacetate hydrolase 3190 67.32 0 3532643..3532948 + 101 115353246 - Bamb_3195 - 2-aminoethylphosphonate--pyruvate transaminase 3191 69.91 0 3533072..3534460 + 462 115353247 - Bamb_3196 - FAD dependent oxidoreductase 3192 67.76 0 3534552..3535280 - 242 115353248 - Bamb_3197 - GntR family transcriptional regulator 3193 68.46 0 3535446..3537617 - 723 115353249 - Bamb_3198 - phospholipase C 3194 69.50 0 3537846..3538763 + 305 115353250 - Bamb_3199 - LysR family transcriptional regulator 3195 68.92 0 3538885..3540525 - 546 115353251 - Bamb_3200 - L-lactate transport 3196 64.47 0 3541090..3541407 + 105 115353252 - Bamb_3201 - hypothetical protein 3197 66.67 0 3541497..3543110 - 537 115353253 - Bamb_3202 - glutamate--cysteine ligase 3198 72.77 +1 3543125..3543337 + 70 115353254 - Bamb_3203 - hypothetical protein 3199 73.03 +1 3543691..3544665 - 324 115353255 - Bamb_3204 - alcohol dehydrogenase 3200 70.95 0 3544662..3545804 - 380 115353256 - Bamb_3205 - AraC family transcriptional regulator 3201 69.91 0 3546162..3546593 + 143 115353257 - Bamb_3206 - glyoxalase/bleomycin resistance protein/dioxygenase 3202 68.27 0 3546604..3547227 - 207 115353258 - Bamb_3207 - YaeQ family protein 3203 59.48 -1 3547336..3547683 - 115 115353259 - Bamb_3208 - hypothetical protein 3204 59.12 -1 3548186..3548728 - 180 115353260 - Bamb_3209 - GCN5-related N-acetyltransferase 3205 61.40 -1 3548881..3549051 + 56 115353261 - Bamb_3210 - hypothetical protein 3206 67.00 0 3549115..3549414 + 99 115353262 - Bamb_3211 - hypothetical protein 3207 68.80 0 3549525..3550883 + 452 115353263 - Bamb_3212 - diguanylate cyclase 3208 68.50 0 3551401..3552870 - 489 115353264 trmE Bamb_3213 - tRNA modification GTPase TrmE 3209 62.79 0 3553133..3553570 + 145 115353265 - Bamb_3214 - hypothetical protein 3210 64.02 0 3553701..3555365 - 554 115353266 - Bamb_3215 - putative inner membrane protein translocase component YidC 3211 63.67 0 3555374..3555640 - 88 115353267 - Bamb_3216 - hypothetical protein 3212 66.23 0 3555716..3556177 - 153 115353268 - Bamb_3217 - ribonuclease P protein component 3213 64.44 0 3556193..3556327 - 44 115353269 rpmH Bamb_3218 - 50S ribosomal protein L34 66.92 MEAN 4.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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