IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.92 STD DEV: 4.28
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545
3213 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2897	 64.61	0	3201672..3203279	-	535	115352953	-	Bamb_2902	-	cytochrome c oxidase, subunit II
2898	 64.00	0	3203337..3203861	-	174	115352954	-	Bamb_2903	-	integral membrane protein-like protein
2899	 71.74	+1	3204057..3205022	-	321	115352955	-	Bamb_2904	-	methyltransferase type 11
2900	 73.92	+1	3205107..3205919	+	270	115352956	-	Bamb_2905	-	phosphoribosyltransferase
2901	 70.37	0	3205985..3206497	+	170	115352957	-	Bamb_2906	-	RNA methyltransferase
2902	 70.48	0	3206526..3207050	-	174	115352958	-	Bamb_2907	-	appr-1-p processing domain-containing protein
2903	 72.97	+1	3207157..3208155	-	332	115352959	gpsA	Bamb_2908	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
2904	 61.25	-1	3208182..3208661	-	159	115352960	-	Bamb_2909	-	preprotein translocase subunit SecB
2905	 63.22	0	3208769..3209029	-	86	115352961	-	Bamb_2910	-	glutaredoxin 3
2906	 69.74	0	3209026..3209448	-	140	115352962	-	Bamb_2911	-	rhodanese domain-containing protein
2907	 66.67	0	3209585..3210331	+	248	115352963	-	Bamb_2912	-	phosphoglycerate mutase 1 family protein
2908	 66.02	0	3210607..3212148	+	513	115352964	-	Bamb_2913	-	carboxyl-terminal protease
2909	 69.85	0	3212252..3213004	+	250	115352965	-	Bamb_2914	-	UBA/THIF-type NAD/FAD binding protein
2910	 67.28	0	3213095..3214876	-	593	115352966	-	Bamb_2915	-	phosphoenolpyruvate-protein phosphotransferase
2911	 58.52	-1	3215072..3215341	-	89	115352967	-	Bamb_2916	-	HPr family phosphocarrier protein
2912	 71.34	+1	3215416..3215886	-	156	115352968	-	Bamb_2917	-	PTS system fructose subfamily IIA component
2913	 68.03	0	3216118..3217074	-	318	115352969	-	Bamb_2918	-	glutathione synthetase
2914	 65.81	0	3217100..3218389	-	429	115352970	-	Bamb_2919	-	glutamate--cysteine ligase
2915	 68.81	0	3218634..3220127	-	497	115352971	-	Bamb_2920	-	ammonium transporter
2916	 64.31	0	3220161..3220499	-	112	115352972	-	Bamb_2921	-	nitrogen regulatory protein P-II
2917	 62.30	-1	3220856..3221107	+	83	115352973	-	Bamb_2922	-	hypothetical protein
2918	 75.17	+1	3221363..3222973	+	536	115352974	-	Bamb_2923	-	Mg chelatase, subunit ChlI
2919	 71.55	+1	3223307..3223879	-	190	115352975	-	Bamb_2924	-	hypothetical protein
2920	 64.80	0	3224040..3224576	+	178	115352976	-	Bamb_2925	-	redoxin domain-containing protein
2921	 70.50	0	3224658..3226013	-	451	115352977	-	Bamb_2926	-	two component, sigma54 specific, Fis family transcriptional regulator
2922	 70.48	0	3226093..3228111	-	672	115352978	-	Bamb_2927	-	periplasmic sensor signal transduction histidine kinase
2923	 64.65	0	3228116..3229405	-	429	115352979	-	Bamb_2928	-	C4-dicarboxylate transporter DctA
2924	 68.27	0	3229759..3231444	-	561	115352980	actP	Bamb_2929	-	acetate permease
2925	 69.28	0	3231456..3231761	-	101	115352981	-	Bamb_2930	-	hypothetical protein
2926	 72.14	+1	3232000..3233205	-	401	115352982	-	Bamb_2931	-	L-carnitine dehydratase/bile acid-inducible protein F
2927	 71.38	+1	3233236..3234381	-	381	115352983	-	Bamb_2932	-	acyl-CoA dehydrogenase domain-containing protein
2928	 67.17	0	3234396..3235592	-	398	115352984	-	Bamb_2933	-	acyl-CoA dehydrogenase domain-containing protein
2929	 71.86	+1	3235622..3237757	-	711	115352985	-	Bamb_2934	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
2930	 68.64	0	3237986..3238948	+	320	115352986	-	Bamb_2935	-	LysR family transcriptional regulator
2931	 71.03	0	3239019..3240899	+	626	115352987	-	Bamb_2936	-	gamma-glutamyltransferase
2932	 65.56	0	3241179..3242171	-	330	115352988	-	Bamb_2937	-	lipoyl synthase
2933	 67.33	0	3242164..3242919	-	251	115352989	lipB	Bamb_2938	-	lipoyltransferase
2934	 68.50	0	3243003..3243329	-	108	115352990	-	Bamb_2939	-	hypothetical protein
2935	 67.27	0	3243432..3244418	+	328	115352991	-	Bamb_2940	-	DNA-binding transcriptional activator GcvA
2936	 57.28	-2	3244402..3244710	-	102	115352992	-	Bamb_2941	-	hypothetical protein
2937	 66.02	0	3244710..3245636	-	308	115352993	-	Bamb_2942	-	aminotransferase, class IV
2938	 66.97	0	3245685..3246995	-	436	115352994	-	Bamb_2943	-	Serine-type D-Ala-D-Ala carboxypeptidase
2939	 69.30	0	3247513..3248157	-	214	115352995	-	Bamb_2944	-	alpha/beta fold family hydrolase-like protein
2940	 62.89	0	3248171..3248488	-	105	115352996	-	Bamb_2945	-	ferredoxin-like protein
2941	 73.18	+1	3248643..3249794	-	383	115352997	-	Bamb_2946	-	VanZ like protein
2942	 72.66	+1	3249814..3250530	-	238	115352998	-	Bamb_2947	-	ABC-type uncharacterized transport system auxiliary component-like protein
2943	 69.24	0	3250527..3251459	-	310	115352999	-	Bamb_2948	-	hypothetical protein
2944	 69.63	0	3251483..3252394	-	303	115353000	-	Bamb_2949	-	ABC transporter related
2945	 68.71	0	3252391..3253515	-	374	115353001	-	Bamb_2950	-	hypothetical protein
2946	 67.64	0	3253797..3255857	+	686	115353002	-	Bamb_2951	-	5'-nucleotidase domain-containing protein
2947	 74.48	+1	3255854..3256711	+	285	115353003	-	Bamb_2952	-	Sel1 domain-containing protein
2948	 74.70	+1	3256908..3257828	+	306	115353004	-	Bamb_2953	-	biotin--protein ligase
2949	 73.00	+1	3257825..3258613	+	262	115353005	-	Bamb_2954	-	pantothenate kinase
2950	 74.49	+1	3258848..3259090	+	80	115353006	-	Bamb_2955	-	hypothetical protein
2951	 67.28	0	3259107..3259592	-	161	115353007	-	Bamb_2956	-	rfaE bifunctional protein
2952	 63.48	0	3259758..3260636	-	292	115353008	-	Bamb_2957	-	hypothetical protein
2953	 70.58	0	3261156..3262382	-	408	115353009	-	Bamb_2958	-	patatin
2954	 72.80	+1	3262407..3263156	-	249	115353010	-	Bamb_2959	-	hypothetical protein
2955	 69.32	0	3263236..3264063	-	275	115353011	-	Bamb_2960	-	enoyl-CoA hydratase
2956	 68.68	0	3264182..3265174	-	330	115353012	-	Bamb_2961	-	fumarylacetoacetate (FAA) hydrolase
2957	 70.32	0	3265302..3266177	+	291	115353013	-	Bamb_2962	-	IclR family transcriptional regulator
2958	 69.80	0	3266249..3267622	+	457	115353014	-	Bamb_2963	-	hypothetical protein
2959	 56.98	-2	3267869..3268126	+	85	115353015	-	Bamb_2964	-	hypothetical protein
2960	 67.79	0	3268390..3269457	+	355	115353016	-	Bamb_2965	-	methionine synthase
2961	 65.16	0	3269504..3272221	+	905	115353017	-	Bamb_2966	-	methionine synthase
2962	 66.05	0	3272335..3272658	-	107	115353018	-	Bamb_2967	-	hypothetical protein
2963	 67.90	0	3272860..3274641	+	593	115353019	argS	Bamb_2968	-	arginyl-tRNA synthetase
2964	 68.92	0	3274726..3275613	+	295	115353020	-	Bamb_2969	-	sporulation domain-containing protein
2965	 63.40	0	3275683..3276324	+	213	115353021	-	Bamb_2970	-	DSBA oxidoreductase
2966	 71.71	+1	3276344..3277117	+	257	115353022	-	Bamb_2971	-	short chain dehydrogenase
2967	 65.85	0	3277381..3278976	+	531	115353023	-	Bamb_2972	-	extracellular solute-binding protein
2968	 72.58	+1	3279167..3280807	+	546	115353024	-	Bamb_2973	-	ABC transporter related
2969	 68.23	0	3281156..3282310	-	384	115353025	-	Bamb_2974	-	beta-lactamase domain-containing protein
2970	 62.71	0	3282543..3284411	+	622	115353026	aceK	Bamb_2975	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
2971	 67.06	0	3284491..3285261	+	256	115353027	-	Bamb_2976	-	carbonate dehydratase
2972	 70.35	0	3285391..3286068	+	225	115353028	-	Bamb_2977	-	short chain dehydrogenase
2973	 70.78	0	3286108..3286545	+	145	115353029	-	Bamb_2978	-	hypothetical protein
2974	 69.53	0	3286654..3287910	+	418	115353030	-	Bamb_2979	-	dienelactone hydrolase and related enzyme-like protein
2975	 70.58	0	3288695..3290074	+	459	115353031	-	Bamb_2980	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
2976	 71.82	+1	3290071..3291486	+	471	115353032	-	Bamb_2981	-	8-amino-7-oxononanoate synthase
2977	 72.50	+1	3291483..3292202	+	239	115353033	bioD	Bamb_2982	-	dithiobiotin synthetase
2978	 67.55	0	3292258..3293277	+	339	115353034	-	Bamb_2983	-	biotin synthase
2979	 74.10	+1	3293379..3294104	-	241	115353035	-	Bamb_2984	-	CutC family protein
2980	 71.48	+1	3294203..3295489	-	428	115353036	-	Bamb_2985	-	diguanylate phosphodiesterase
2981	 68.76	0	3295781..3297448	+	555	115353037	-	Bamb_2986	-	Na+/H+ antiporter
2982	 69.42	0	3297781..3299199	+	472	115353038	-	Bamb_2987	-	glycoside hydrolase family protein
2983	 69.52	0	3299337..3302909	-	1190	115353039	-	Bamb_2988	-	2-oxoacid ferredoxin oxidoreductase
2984	 65.59	0	3305387..3305944	-	185	115353040	-	Bamb_2989	-	hexapaptide repeat-containing transferase
2985	 68.46	0	3306396..3307010	+	204	115353041	-	Bamb_2990	-	glutathione S-transferase domain-containing protein
2986	 66.46	0	3307098..3308063	-	321	115353042	-	Bamb_2991	-	K+ channel inward rectifier domain-containing protein
2987	 66.76	0	3308266..3309285	-	339	115353043	-	Bamb_2992	-	sulfate ABC transporter, periplasmic sulfate-binding protein
2988	 72.15	+1	3309738..3310631	+	297	115353044	-	Bamb_2993	-	dihydrodipicolinate synthase
2989	 73.73	+1	3310764..3311810	-	348	115353045	-	Bamb_2994	-	LysR family transcriptional regulator
2990	 74.10	+1	3311918..3313195	+	425	115353046	-	Bamb_2995	-	major facilitator transporter
2991	 68.80	0	3313239..3315440	-	733	115353047	-	Bamb_2996	-	TonB-dependent siderophore receptor
2992	 71.83	+1	3315609..3316247	-	212	115353048	-	Bamb_2997	-	glutathione S-transferase domain-containing protein
2993	 73.83	+1	3316361..3317281	+	306	115353049	-	Bamb_2998	-	LysR family transcriptional regulator
2994	 71.74	+1	3317287..3319512	-	741	115353050	-	Bamb_2999	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
2995	 72.95	+1	3319509..3320510	-	333	115353051	-	Bamb_3000	-	molybdopterin dehydrogenase, FAD-binding
2996	 71.43	+1	3320529..3321284	-	251	115353052	-	Bamb_3001	-	ferredoxin
66.92	MEAN

4.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.