version 1.0
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545 3213 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 170 63.95 0 202669..203184 + 171 115350226 - Bamb_0170 - CheW protein 171 71.39 +1 203222..205168 + 648 115350227 - Bamb_0171 - methyl-accepting chemotaxis sensory transducer 172 68.81 0 205172..206149 + 325 115350228 - Bamb_0172 - MCP methyltransferase, CheR-type 173 70.60 0 206146..206907 + 253 115350229 - Bamb_0173 - chemoreceptor glutamine deamidase CheD 174 70.27 0 206913..207995 + 360 115350230 - Bamb_0174 - chemotaxis-specific methylesterase 175 64.39 0 208063..208458 + 131 115350231 - Bamb_0175 - response regulator receiver protein 176 69.67 0 208460..209191 + 243 115350232 - Bamb_0176 - chemotaxis regulator CheZ 177 74.40 +1 209489..209992 + 167 115350233 - Bamb_0177 - hypothetical protein 178 66.75 0 210009..211238 + 409 115350234 - Bamb_0178 - hypothetical protein 179 68.07 0 211406..211903 + 165 115350235 - Bamb_0179 - 3-demethylubiquinone-9 3-methyltransferase 180 65.09 0 212268..212648 + 126 115350236 - Bamb_0180 - hypothetical protein 181 69.58 0 212915..214114 + 399 115350237 flhB Bamb_0181 - flagellar biosynthesis protein FlhB 182 67.90 0 214111..216213 + 700 115350238 flhA Bamb_0182 - flagellar biosynthesis protein FlhA 183 70.85 0 216210..217976 + 588 115350239 flhF Bamb_0183 - flagellar biosynthesis regulator FlhF 184 72.41 +1 217969..218787 + 272 115350240 - Bamb_0184 - flagellar biosynthesisprotein, FlhG 185 68.44 0 218805..219536 + 243 115350241 fliA Bamb_0185 - flagellar biosynthesis sigma factor 186 63.85 0 219887..221305 + 472 115350242 - Bamb_0186 - S-adenosyl-L-homocysteine hydrolase 187 62.15 -1 221461..221814 + 117 115350243 - Bamb_0187 - membrane protein of unknown function 188 66.55 0 221839..222669 + 276 115350244 - Bamb_0188 - 5,10-methylenetetrahydrofolate reductase 189 72.01 +1 222772..224250 - 492 115350245 - Bamb_0189 - amidase 190 69.41 0 224331..225023 - 230 115350246 - Bamb_0190 - carboxymethylenebutenolidase 191 75.19 +1 225305..226384 + 359 115350247 - Bamb_0191 - 2-nitropropane dioxygenase, NPD 192 63.87 0 226836..227978 + 380 115350248 - Bamb_0192 - extracellular ligand-binding receptor 193 72.10 +1 228099..229313 - 404 115350249 - Bamb_0193 - major facilitator transporter 194 72.29 +1 229827..230573 + 248 115350250 - Bamb_0194 - pyridoxamine 5'-phosphate oxidase-related, FMN-binding 195 62.24 -1 230929..231222 + 97 115350251 - Bamb_0195 - histone family protein nucleoid-structuring protein H-NS 196 66.42 0 231404..232618 + 404 115350252 - Bamb_0196 - cation diffusion facilitator family transporter 197 62.85 0 232646..233116 - 156 115350253 - Bamb_0197 - AsnC family transcriptional regulator 198 66.67 0 233196..233855 - 219 115350254 - Bamb_0198 - hypothetical protein 199 66.82 0 233852..234496 - 214 115350255 - Bamb_0199 - beta-lactamase domain-containing protein 200 63.89 0 235155..235766 + 203 115350256 - Bamb_0200 - rare lipoprotein A 201 71.49 +1 235863..236753 - 296 115350257 - Bamb_0201 - hypothetical protein 202 72.73 +1 236800..237228 + 142 115350258 - Bamb_0202 - hypothetical protein 203 70.09 0 237355..237939 + 194 115350259 - Bamb_0203 - phosphoheptose isomerase 204 67.67 0 237957..238754 + 265 115350260 - Bamb_0204 - transport-associated 205 68.33 0 238751..239110 + 119 115350261 - Bamb_0205 - cytochrome c, class I 206 60.32 -1 240397..242964 + 855 115350262 - Bamb_0207 - Rhs element Vgr protein 207 60.13 -1 242980..243606 + 208 115350263 - Bamb_0208 - hypothetical protein 208 58.55 -1 243603..245783 + 726 115350264 - Bamb_0209 - hypothetical protein 209 60.14 -1 245816..246703 + 295 115350265 - Bamb_0210 - hypothetical protein 210 57.45 -2 246714..246995 + 93 115350266 - Bamb_0211 - PAAR repeat-containing protein 211 69.90 0 247296..247976 - 226 115350267 - Bamb_0212 - hypothetical protein 212 71.26 +1 248056..249144 + 362 115350268 - Bamb_0213 - arginase/agmatinase/formiminoglutamase 213 59.97 -1 249373..250104 + 243 115350269 - Bamb_0214 - hypothetical protein 214 59.56 -1 250166..250531 + 121 115350270 - Bamb_0215 - hypothetical protein 215 71.03 0 250641..252038 - 465 115350271 - Bamb_0216 - glucarate dehydratase 216 66.67 0 252111..253451 - 446 115350272 - Bamb_0217 - d-galactonate transporter 217 73.30 +1 253751..254383 + 210 115350273 - Bamb_0218 - hypothetical protein 218 70.70 0 254380..255717 + 445 115350274 - Bamb_0219 - carotenoid oxygenase 219 67.69 0 255731..256897 - 388 115350275 - Bamb_0220 - hypothetical protein 220 68.48 0 256906..258060 - 384 115350276 - Bamb_0221 - hypothetical protein 221 67.95 0 258079..258777 - 232 115350277 - Bamb_0222 - ABC transporter related 222 71.31 +1 258788..259993 - 401 115350278 - Bamb_0223 - RND family efflux transporter MFP subunit 223 61.81 -1 260294..260602 + 102 115350279 - Bamb_0224 - hypothetical protein 224 74.35 +1 260677..261483 - 268 115350280 - Bamb_0225 - hypothetical protein 225 72.07 +1 261581..262450 + 289 115350281 - Bamb_0226 - 6-phosphogluconate dehydrogenase, NAD-binding 226 68.08 0 262522..263157 + 211 115350282 - Bamb_0227 - lysine exporter protein LysE/YggA 227 76.37 +2 263229..264506 - 425 115350283 - Bamb_0228 - major facilitator transporter 228 73.40 +1 264604..265524 + 306 115350284 - Bamb_0229 - LysR family transcriptional regulator 229 67.03 0 265738..266571 - 277 115350285 - Bamb_0230 - OmpW family protein 230 67.15 0 266588..267829 - 413 115350286 - Bamb_0231 - hypothetical protein 231 67.85 0 267984..269417 - 477 115350287 - Bamb_0232 - hypothetical protein 232 66.77 0 269847..270797 - 316 115350288 - Bamb_0233 - N-acetyl-gamma-glutamyl-phosphate reductase 233 68.24 0 270998..271570 - 190 115350289 - Bamb_0234 - flavodoxin/nitric oxide synthase 234 72.31 +1 271786..272388 - 200 115350290 - Bamb_0235 - YbhB and YbcL 235 62.88 0 272629..273315 - 228 115350291 pyrE Bamb_0236 - orotate phosphoribosyltransferase 236 65.96 0 273776..276046 + 756 115350292 - Bamb_0237 - malic enzyme 237 67.98 0 276182..279772 - 1196 115350293 - Bamb_0238 - indolepyruvate ferredoxin oxidoreductase 238 70.50 0 280027..280287 + 86 115350294 - Bamb_0239 - hypothetical protein 239 63.30 0 280402..281499 - 365 115350295 - Bamb_0240 - 4-hydroxyphenylpyruvate dioxygenase 240 66.67 0 281713..282237 + 174 115350296 - Bamb_0241 - AsnC family transcriptional regulator 241 65.12 0 282305..282952 - 215 115350297 - Bamb_0242 - GCN5-related N-acetyltransferase 242 64.52 0 283188..283793 - 201 115350298 - Bamb_0243 - TetR family transcriptional regulator 243 71.32 +1 283816..284631 - 271 115350299 - Bamb_0244 - hypothetical protein 244 65.66 0 284762..285850 - 362 115350300 - Bamb_0245 - phenylacetate-CoA oxygenase/reductase, PaaK subunit 245 70.74 0 285853..286416 - 187 115350301 - Bamb_0246 - phenylacetate-CoA oxygenase, PaaJ subunit 246 68.16 0 286442..287245 - 267 115350302 - Bamb_0247 - phenylacetate-CoA oxygenase, PaaI subunit 247 64.91 0 287256..287540 - 94 115350303 - Bamb_0248 - phenylacetate-CoA oxygenase subunit PaaB 248 66.77 0 287577..288575 - 332 115350304 - Bamb_0249 - phenylacetate-CoA oxygenase subunit PaaA 249 70.22 0 288772..290037 + 421 115350305 - Bamb_0250 - GDSL family lipase 250 70.44 0 296763..297239 + 158 115350306 - Bamb_0251 - hypothetical protein 251 61.63 -1 298436..299626 + 396 115350307 - Bamb_0252 - elongation factor Tu 252 57.48 -2 299805..300185 + 126 115350308 secE Bamb_0253 - preprotein translocase subunit SecE 253 58.60 -1 300187..300744 + 185 115350309 nusG Bamb_0254 - transcription antitermination protein NusG 254 60.65 -1 300885..301316 + 143 115350310 rplK Bamb_0255 - 50S ribosomal protein L11 255 62.37 -1 301317..302015 + 232 115350311 rplA Bamb_0256 - 50S ribosomal protein L1 256 58.73 -1 302254..302820 + 188 115350312 rplJ Bamb_0257 - 50S ribosomal protein L10 257 58.67 -1 302884..303258 + 124 115350313 rplL Bamb_0258 - 50S ribosomal protein L7/L12 258 61.75 -1 303636..307742 + 1368 115350314 rpoB Bamb_0259 - DNA-directed RNA polymerase subunit beta 259 62.78 0 307764..312005 + 1413 115350315 - Bamb_0260 - DNA-directed RNA polymerase subunit beta' 260 67.86 0 312249..314096 + 615 115350316 - Bamb_0261 - ATP-dependent DNA helicase RecQ 261 61.42 -1 314325..314705 + 126 115350317 rpsL Bamb_0262 - 30S ribosomal protein S12 262 60.30 -1 314878..315348 + 156 115350318 - Bamb_0263 - 30S ribosomal protein S7 263 60.25 -1 315472..317574 + 700 115350319 - Bamb_0264 - elongation factor G 264 61.54 -1 317614..318804 + 396 115350320 - Bamb_0265 - elongation factor Tu 265 58.97 -1 319089..319400 + 103 115350321 rpsJ Bamb_0266 - 30S ribosomal protein S10 266 61.62 -1 319575..320228 + 217 115350322 rplC Bamb_0267 - 50S ribosomal protein L3 267 59.58 -1 320228..320848 + 206 115350323 rplD Bamb_0268 - 50S ribosomal protein L4 268 55.56 -2 320845..321159 + 104 115350324 rplW Bamb_0269 - 50S ribosomal protein L23 269 63.77 0 321162..321989 + 275 115350325 rplB Bamb_0270 - 50S ribosomal protein L2 66.92 MEAN 4.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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