version 1.0
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545 3213 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2012 59.20 -1 2212278..2212652 - 124 115352068 - Bamb_2017 - hypothetical protein 2013 58.40 -1 2212885..2213271 + 128 115352069 - Bamb_2018 - phage transcriptional regulator, AlpA 2014 61.90 -1 2213280..2213804 - 174 115352070 - Bamb_2019 - prophage CP4-57 regulatory 2015 59.78 -1 2213808..2214083 - 91 115352071 - Bamb_2020 - hypothetical protein 2016 62.77 0 2214147..2215403 - 418 115352072 - Bamb_2021 - phage integrase family protein 2017 66.17 0 2215705..2217324 - 539 115352073 guaA Bamb_2022 - bifunctional GMP synthase/glutamine amidotransferase protein 2018 72.67 +1 2217432..2218031 - 199 115352074 - Bamb_2023 - hypothetical protein 2019 66.53 0 2218038..2219498 - 486 115352075 - Bamb_2024 - inositol-5-monophosphate dehydrogenase 2020 74.70 +1 2219764..2220585 - 273 115352076 - Bamb_2025 - metal-binding integral membrane protein-like protein 2021 69.02 0 2220616..2221380 - 254 115352077 - Bamb_2026 - protein of unknown function DUF899, thioredoxin family protein 2022 75.59 +2 2221494..2222714 + 406 115352078 - Bamb_2027 - hypothetical protein 2023 70.76 0 2222745..2223428 + 227 115352079 - Bamb_2028 - hypothetical protein 2024 70.68 0 2223604..2224575 + 323 115352080 - Bamb_2029 - hypothetical protein 2025 68.83 0 2224639..2224962 - 107 115352081 - Bamb_2030 - hypothetical protein 2026 60.05 -1 2224967..2225404 - 145 115352082 - Bamb_2031 - cyclase/dehydrase 2027 62.42 -1 2225504..2225950 + 148 115352083 smpB Bamb_2032 - SsrA-binding protein 2028 64.53 0 2226179..2227114 - 311 115352084 - Bamb_2033 - band 7 protein 2029 67.82 0 2227148..2227582 - 144 115352085 - Bamb_2034 - hypothetical protein 2030 63.88 0 2227748..2230147 - 799 115352086 - Bamb_2035 - phosphoenolpyruvate synthase 2031 62.99 0 2230535..2231350 + 271 115352087 - Bamb_2036 - hypothetical protein 2032 71.26 +1 2231467..2232249 - 260 115352088 - Bamb_2037 - tRNA/rRNA methyltransferase (SpoU) 2033 69.57 0 2232547..2233200 - 217 115352089 rnhB Bamb_2038 - ribonuclease HII 2034 68.72 0 2233197..2234366 - 389 115352090 lpxB Bamb_2039 - lipid-A-disaccharide synthase 2035 66.16 0 2234370..2235158 - 262 115352091 - Bamb_2040 - UDP-N-acetylglucosamine acyltransferase 2036 61.70 -1 2235226..2235708 - 160 115352092 fabZ Bamb_2041 - (3R)-hydroxymyristoyl-ACP dehydratase 2037 68.40 0 2235824..2236918 - 364 115352093 lpxD Bamb_2042 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2038 64.58 0 2236935..2237462 - 175 115352094 - Bamb_2043 - outer membrane chaperone Skp (OmpH) 2039 63.07 0 2237496..2239802 - 768 115352095 - Bamb_2044 - surface antigen (D15) 2040 67.46 0 2239867..2241255 - 462 115352096 - Bamb_2045 - putative membrane-associated zinc metalloprotease 2041 68.17 0 2241267..2242463 - 398 115352097 - Bamb_2046 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2042 69.22 0 2242479..2243300 - 273 115352098 - Bamb_2047 - phosphatidate cytidylyltransferase 2043 66.54 0 2243294..2244076 - 260 115352099 - Bamb_2048 - undecaprenyl diphosphate synthase 2044 62.39 -1 2244126..2244686 - 186 115352100 frr Bamb_2049 - ribosome recycling factor 2045 65.55 0 2244788..2245501 - 237 115352101 pyrH Bamb_2050 - uridylate kinase 2046 63.61 0 2245658..2246539 - 293 115352102 tsf Bamb_2051 - elongation factor Ts 2047 61.13 -1 2246702..2247442 - 246 115352103 rpsB Bamb_2052 - 30S ribosomal protein S2 2048 65.44 0 2247825..2248640 + 271 115352104 - Bamb_2053 - methionine aminopeptidase 2049 67.64 0 2248692..2251268 + 858 115352105 - Bamb_2054 - PII uridylyl-transferase 2050 71.64 +1 2251285..2253357 + 690 115352106 - Bamb_2055 - pseudouridine synthase, Rsu 2051 64.98 0 2253468..2254001 - 177 115352107 - Bamb_2056 - peptide deformylase 2052 67.97 0 2253998..2256073 - 691 115352108 - Bamb_2057 - DNA ligase, NAD-dependent 2053 69.98 0 2256245..2257540 - 431 115352109 - Bamb_2058 - hypothetical protein 2054 68.88 0 2257625..2261053 - 1142 115352110 - Bamb_2059 - chromosome segregation protein SMC 2055 71.23 +1 2261277..2262218 - 313 115352111 - Bamb_2060 - hypothetical protein 2056 68.81 0 2262478..2263641 + 387 115352112 - Bamb_2061 - hypothetical protein 2057 65.46 0 2263687..2264514 + 275 115352113 dapD Bamb_2062 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 2058 65.58 0 2264514..2264882 + 122 115352114 - Bamb_2063 - hypothetical protein 2059 69.12 0 2264973..2266112 + 379 115352115 - Bamb_2064 - succinyl-diaminopimelate desuccinylase 2060 68.21 0 2266124..2267032 + 302 115352116 - Bamb_2065 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2061 67.36 0 2267147..2268586 + 479 115352117 cls Bamb_2066 - cardiolipin synthetase 2062 63.33 0 2268707..2269186 - 159 115352118 - Bamb_2067 - glutathione peroxidase 2063 67.44 0 2269323..2271254 + 643 115352119 - Bamb_2068 - ABC transporter related 2064 66.67 0 2271435..2271701 - 88 115352120 - Bamb_2069 - hypothetical protein 2065 69.06 0 2271848..2273224 - 458 115352121 - Bamb_2070 - DNA repair protein RadA 2066 69.09 0 2273236..2274306 - 356 115352122 alr Bamb_2071 - alanine racemase 2067 64.76 0 2274525..2275832 + 435 115352123 - Bamb_2072 - hypothetical protein 2068 71.85 +1 2275891..2276700 + 269 115352124 - Bamb_2073 - phosphomethylpyrimidine kinase 2069 72.60 +1 2276719..2277678 - 319 115352125 - Bamb_2074 - hypothetical protein 2070 71.38 +1 2277675..2278778 - 367 115352126 - Bamb_2075 - phage SPO1 DNA polymerase-related protein 2071 66.67 0 2278765..2279265 - 166 115352127 - Bamb_2076 - ribosomal-protein-alanine acetyltransferase 2072 73.83 +1 2279262..2280029 - 255 115352128 - Bamb_2077 - peptidase M22, glycoprotease 2073 62.96 0 2280177..2280446 + 89 115352129 - Bamb_2078 - acyl-CoA-binding protein 2074 70.57 0 2280807..2282345 + 512 115352130 - Bamb_2079 - DEAD/DEAH box helicase domain-containing protein 2075 64.76 0 2282734..2284041 + 435 115352131 - Bamb_2080 - isocitrate lyase 2076 67.59 0 2284264..2284698 - 144 115352132 - Bamb_2081 - UspA domain-containing protein 2077 70.31 0 2284858..2285763 - 301 115352133 - Bamb_2082 - LysR family transcriptional regulator 2078 70.34 0 2285918..2286679 + 253 115352134 - Bamb_2083 - haloacid dehalogenase, type II 2079 64.97 0 2286747..2288339 + 530 115352135 - Bamb_2084 - malate synthase 2080 69.32 0 2288526..2288939 - 137 115352136 - Bamb_2085 - hypothetical protein 2081 70.29 0 2289248..2290129 + 293 115352137 - Bamb_2086 - AraC family transcriptional regulator 2082 66.02 0 2290157..2290621 - 154 115352138 - Bamb_2087 - GCN5-related N-acetyltransferase 2083 67.73 0 2291929..2293338 - 469 115352139 gltX Bamb_2088 - glutamyl-tRNA synthetase 2084 68.65 0 2293619..2294527 + 302 115352140 - Bamb_2089 - patatin 2085 65.33 0 2294655..2295326 - 223 115352141 - Bamb_2090 - NLP/P60 protein 2086 68.21 0 2295455..2297077 - 540 115352142 - Bamb_2091 - ABC transporter related 2087 67.67 0 2297074..2298171 - 365 115352143 - Bamb_2092 - binding-protein-dependent transport systems inner membrane component 2088 65.80 0 2298220..2299263 - 347 115352144 - Bamb_2093 - binding-protein-dependent transport systems inner membrane component 2089 68.21 0 2299315..2301198 - 627 115352145 - Bamb_2094 - extracellular solute-binding protein 2090 69.29 0 2301411..2301791 - 126 115352146 - Bamb_2095 - hypothetical protein 2091 69.65 0 2302137..2305355 + 1072 115352147 - Bamb_2096 - acriflavin resistance protein 2092 71.43 +1 2305345..2306520 + 391 115352148 - Bamb_2097 - RND family efflux transporter MFP subunit 2093 72.53 +1 2306513..2307928 + 471 115352149 - Bamb_2098 - RND efflux system outer membrane lipoprotein 2094 69.35 0 2307925..2308296 + 123 115352150 - Bamb_2099 - hypothetical protein 2095 70.27 0 2308375..2309040 - 221 115352151 - Bamb_2100 - two component transcriptional regulator 2096 69.54 0 2309060..2310451 - 463 115352152 - Bamb_2101 - periplasmic sensor signal transduction histidine kinase 2097 67.11 0 2310463..2311137 - 224 115352153 - Bamb_2102 - two component transcriptional regulator 2098 65.35 0 2311353..2311655 + 100 115352154 - Bamb_2103 - hypothetical protein 2099 63.96 0 2311756..2312088 - 110 115352155 - Bamb_2104 - cytochrome C oxidase subunit IV 2100 66.17 0 2312089..2312697 - 202 115352156 - Bamb_2105 - cytochrome c oxidase, subunit III 2101 62.98 0 2312697..2314703 - 668 115352157 - Bamb_2106 - cytochrome-c oxidase 2102 63.40 0 2314707..2315594 - 295 115352158 - Bamb_2107 - ubiquinol oxidase, subunit II 2103 65.82 0 2315882..2317411 - 509 115352159 - Bamb_2108 - proton-translocating NADH-quinone oxidoreductase, chain M 2104 63.08 0 2318197..2319450 - 417 115352160 - Bamb_2109 - aspartate kinase 2105 73.00 +1 2319790..2321211 - 473 115352161 - Bamb_2110 - tRNA(Ile)-lysidine synthetase 2106 64.51 0 2321255..2322226 - 323 115352162 - Bamb_2111 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 2107 69.68 0 2322326..2323189 - 287 115352163 - Bamb_2112 - HhH-GPD family protein 2108 64.88 0 2323233..2324630 - 465 115352164 cysS Bamb_2113 - cysteinyl-tRNA synthetase 2109 68.65 0 2324832..2325587 + 251 115352165 - Bamb_2114 - TPR repeat-containing protein 2110 63.54 0 2325627..2326202 + 191 115352166 - Bamb_2115 - peptidylprolyl isomerase 2111 60.98 -1 2326291..2326782 + 163 115352167 - Bamb_2116 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 66.92 MEAN 4.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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