version 1.0
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545 3213 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1968 64.61 0 2170913..2171737 + 274 115352024 - Bamb_1973 - hypothetical protein 1969 61.60 -1 2172099..2173538 - 479 115352025 - Bamb_1974 - dihydrolipoamide dehydrogenase 1970 59.72 -1 2173644..2174003 - 119 115352026 - Bamb_1975 - thioredoxin domain-containing protein 1971 58.79 -1 2174068..2174397 - 109 115352027 - Bamb_1976 - thioredoxin 1972 64.08 0 2174440..2175561 - 373 115352028 - Bamb_1977 - NADH:flavin oxidoreductase/NADH oxidase 1973 60.78 -1 2175639..2176199 - 186 115352029 - Bamb_1978 - OsmC family protein 1974 60.00 -1 2176302..2176976 - 224 115352030 - Bamb_1979 - DSBA oxidoreductase 1975 58.87 -1 2177083..2177646 - 187 115352031 - Bamb_1980 - TetR family transcriptional regulator 1976 59.65 -1 2177741..2178082 - 113 115352032 - Bamb_1981 - alkylhydroperoxidase 1977 61.01 -1 2178111..2178905 - 264 115352033 - Bamb_1982 - short-chain dehydrogenase/reductase SDR 1978 70.09 0 2180256..2181074 + 272 115352034 - Bamb_1983 - hypothetical protein 1979 69.12 0 2181149..2181433 + 94 115352035 - Bamb_1984 - hypothetical protein 1980 66.67 0 2181460..2182293 + 277 115352036 - Bamb_1985 - putative replication initiator and transcription repressor protein 1981 70.42 0 2182559..2183197 + 212 115352037 - Bamb_1986 - cobyrinic acid a,c-diamide synthase 1982 68.70 0 2183460..2183999 + 179 115352038 - Bamb_1987 - hypothetical protein 1983 67.86 0 2183996..2184583 + 195 115352039 - Bamb_1988 - Type IV secretory pathway protease TraF-like protein 1984 68.46 0 2185032..2187035 + 667 115352040 - Bamb_1989 - hypothetical protein 1985 58.86 -1 2187066..2187962 - 298 115352041 - Bamb_1990 - LysR family transcriptional regulator 1986 57.93 -2 2188121..2188681 + 186 115352042 - Bamb_1991 - hypothetical protein 1987 60.86 -1 2188674..2189000 + 108 115352043 - Bamb_1992 - hypothetical protein 1988 53.57 -2 2189022..2189861 + 279 115352044 - Bamb_1993 - beta-lactamase domain-containing protein 1989 66.34 0 2189907..2190824 - 305 115352045 - Bamb_1994 - LysR family transcriptional regulator 1990 67.09 0 2190971..2191675 + 234 115352046 - Bamb_1995 - ThiJ/PfpI domain-containing protein 1991 68.34 0 2191679..2192872 + 397 115352047 - Bamb_1996 - major facilitator transporter 1992 59.92 -1 2193645..2193896 + 83 115352048 - Bamb_1997 - hypothetical protein 1993 60.22 -1 2193969..2194433 + 154 115352049 - Bamb_1998 - MarR family transcriptional regulator 1994 58.18 -2 2194430..2196715 + 761 115352050 - Bamb_1999 - ABC transporter related 1995 63.38 0 2196724..2197665 + 313 115352051 - Bamb_2000 - LysR family transcriptional regulator 1996 61.05 -1 2197662..2197928 + 88 115352052 - Bamb_2001 - putative lipoprotein 1997 65.22 0 2198164..2200161 + 665 115352053 - Bamb_2002 - TRAG family protein 1998 66.04 0 2200158..2200634 + 158 115352054 - Bamb_2003 - CopG/DNA-binding domain-containing protein 1999 69.63 0 2200631..2201677 + 348 115352055 - Bamb_2004 - type II secretion system protein E 2000 64.06 0 2201674..2202057 + 127 115352056 - Bamb_2005 - conjugal transfer protein TrbC 2001 68.42 0 2202054..2202338 + 94 115352057 - Bamb_2006 - putative conjugal transfer trbD transmembrane protein 2002 65.97 0 2202351..2204801 + 816 115352058 - Bamb_2007 - AAA ATPase 2003 64.23 0 2204798..2205535 + 245 115352059 - Bamb_2008 - putative conjugal transfer TrbJ signal peptide protein 2004 70.57 0 2205547..2205879 + 110 115352060 - Bamb_2009 - putative lipoprotein 2005 67.67 0 2205876..2207270 + 464 115352061 - Bamb_2010 - TrbL/VirB6 plasmid conjugal transfer protein 2006 64.82 0 2207295..2207999 + 234 115352062 - Bamb_2011 - conjugal transfer protein 2007 66.47 0 2207996..2209000 + 334 115352063 - Bamb_2012 - conjugal transfer protein TrbG/VirB9/CagX 2008 68.61 0 2209003..2210286 + 427 115352064 - Bamb_2013 - conjugation TrbI family protein 2009 65.49 0 2210283..2210537 + 84 115352065 - Bamb_2014 - hypothetical protein 2010 58.45 -1 2210526..2211146 - 206 115352066 - Bamb_2015 - hypothetical protein 2011 64.25 0 2211236..2212228 - 330 115352067 - Bamb_2016 - transposase, IS4 family protein 2012 59.20 -1 2212278..2212652 - 124 115352068 - Bamb_2017 - hypothetical protein 2013 58.40 -1 2212885..2213271 + 128 115352069 - Bamb_2018 - phage transcriptional regulator, AlpA 2014 61.90 -1 2213280..2213804 - 174 115352070 - Bamb_2019 - prophage CP4-57 regulatory 2015 59.78 -1 2213808..2214083 - 91 115352071 - Bamb_2020 - hypothetical protein 2016 62.77 0 2214147..2215403 - 418 115352072 - Bamb_2021 - phage integrase family protein 2017 66.17 0 2215705..2217324 - 539 115352073 guaA Bamb_2022 - bifunctional GMP synthase/glutamine amidotransferase protein 2018 72.67 +1 2217432..2218031 - 199 115352074 - Bamb_2023 - hypothetical protein 2019 66.53 0 2218038..2219498 - 486 115352075 - Bamb_2024 - inositol-5-monophosphate dehydrogenase 2020 74.70 +1 2219764..2220585 - 273 115352076 - Bamb_2025 - metal-binding integral membrane protein-like protein 2021 69.02 0 2220616..2221380 - 254 115352077 - Bamb_2026 - protein of unknown function DUF899, thioredoxin family protein 2022 75.59 +2 2221494..2222714 + 406 115352078 - Bamb_2027 - hypothetical protein 2023 70.76 0 2222745..2223428 + 227 115352079 - Bamb_2028 - hypothetical protein 2024 70.68 0 2223604..2224575 + 323 115352080 - Bamb_2029 - hypothetical protein 2025 68.83 0 2224639..2224962 - 107 115352081 - Bamb_2030 - hypothetical protein 2026 60.05 -1 2224967..2225404 - 145 115352082 - Bamb_2031 - cyclase/dehydrase 2027 62.42 -1 2225504..2225950 + 148 115352083 smpB Bamb_2032 - SsrA-binding protein 2028 64.53 0 2226179..2227114 - 311 115352084 - Bamb_2033 - band 7 protein 2029 67.82 0 2227148..2227582 - 144 115352085 - Bamb_2034 - hypothetical protein 2030 63.88 0 2227748..2230147 - 799 115352086 - Bamb_2035 - phosphoenolpyruvate synthase 2031 62.99 0 2230535..2231350 + 271 115352087 - Bamb_2036 - hypothetical protein 2032 71.26 +1 2231467..2232249 - 260 115352088 - Bamb_2037 - tRNA/rRNA methyltransferase (SpoU) 2033 69.57 0 2232547..2233200 - 217 115352089 rnhB Bamb_2038 - ribonuclease HII 2034 68.72 0 2233197..2234366 - 389 115352090 lpxB Bamb_2039 - lipid-A-disaccharide synthase 2035 66.16 0 2234370..2235158 - 262 115352091 - Bamb_2040 - UDP-N-acetylglucosamine acyltransferase 2036 61.70 -1 2235226..2235708 - 160 115352092 fabZ Bamb_2041 - (3R)-hydroxymyristoyl-ACP dehydratase 2037 68.40 0 2235824..2236918 - 364 115352093 lpxD Bamb_2042 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2038 64.58 0 2236935..2237462 - 175 115352094 - Bamb_2043 - outer membrane chaperone Skp (OmpH) 2039 63.07 0 2237496..2239802 - 768 115352095 - Bamb_2044 - surface antigen (D15) 2040 67.46 0 2239867..2241255 - 462 115352096 - Bamb_2045 - putative membrane-associated zinc metalloprotease 2041 68.17 0 2241267..2242463 - 398 115352097 - Bamb_2046 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2042 69.22 0 2242479..2243300 - 273 115352098 - Bamb_2047 - phosphatidate cytidylyltransferase 2043 66.54 0 2243294..2244076 - 260 115352099 - Bamb_2048 - undecaprenyl diphosphate synthase 2044 62.39 -1 2244126..2244686 - 186 115352100 frr Bamb_2049 - ribosome recycling factor 2045 65.55 0 2244788..2245501 - 237 115352101 pyrH Bamb_2050 - uridylate kinase 2046 63.61 0 2245658..2246539 - 293 115352102 tsf Bamb_2051 - elongation factor Ts 2047 61.13 -1 2246702..2247442 - 246 115352103 rpsB Bamb_2052 - 30S ribosomal protein S2 2048 65.44 0 2247825..2248640 + 271 115352104 - Bamb_2053 - methionine aminopeptidase 2049 67.64 0 2248692..2251268 + 858 115352105 - Bamb_2054 - PII uridylyl-transferase 2050 71.64 +1 2251285..2253357 + 690 115352106 - Bamb_2055 - pseudouridine synthase, Rsu 2051 64.98 0 2253468..2254001 - 177 115352107 - Bamb_2056 - peptide deformylase 2052 67.97 0 2253998..2256073 - 691 115352108 - Bamb_2057 - DNA ligase, NAD-dependent 2053 69.98 0 2256245..2257540 - 431 115352109 - Bamb_2058 - hypothetical protein 2054 68.88 0 2257625..2261053 - 1142 115352110 - Bamb_2059 - chromosome segregation protein SMC 2055 71.23 +1 2261277..2262218 - 313 115352111 - Bamb_2060 - hypothetical protein 2056 68.81 0 2262478..2263641 + 387 115352112 - Bamb_2061 - hypothetical protein 2057 65.46 0 2263687..2264514 + 275 115352113 dapD Bamb_2062 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 2058 65.58 0 2264514..2264882 + 122 115352114 - Bamb_2063 - hypothetical protein 2059 69.12 0 2264973..2266112 + 379 115352115 - Bamb_2064 - succinyl-diaminopimelate desuccinylase 2060 68.21 0 2266124..2267032 + 302 115352116 - Bamb_2065 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2061 67.36 0 2267147..2268586 + 479 115352117 cls Bamb_2066 - cardiolipin synthetase 2062 63.33 0 2268707..2269186 - 159 115352118 - Bamb_2067 - glutathione peroxidase 2063 67.44 0 2269323..2271254 + 643 115352119 - Bamb_2068 - ABC transporter related 2064 66.67 0 2271435..2271701 - 88 115352120 - Bamb_2069 - hypothetical protein 2065 69.06 0 2271848..2273224 - 458 115352121 - Bamb_2070 - DNA repair protein RadA 2066 69.09 0 2273236..2274306 - 356 115352122 alr Bamb_2071 - alanine racemase 2067 64.76 0 2274525..2275832 + 435 115352123 - Bamb_2072 - hypothetical protein 66.92 MEAN 4.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0