IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.92   STD DEV: 4.28
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545
3213 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
107	 71.63	+1	123828..125480	-	550	115350163	-	Bamb_0107	-	acyl-CoA dehydrogenase domain-containing protein
108	 73.24	+1	125600..126268	+	222	115350164	-	Bamb_0108	-	TetR family transcriptional regulator
109	 67.62	0	126501..127655	+	384	115350165	-	Bamb_0109	-	putative aminotransferase
110	 66.90	0	127715..128560	+	281	115350166	-	Bamb_0110	-	extracellular solute-binding protein
111	 70.18	0	128572..129993	+	473	115350167	-	Bamb_0111	-	FAD linked oxidase domain-containing protein
112	 69.11	0	130020..130592	-	190	115350168	-	Bamb_0112	-	PadR-like family transcriptional regulator
113	 65.74	0	130661..131092	-	143	115350169	-	Bamb_0113	-	MerR family transcriptional regulator
114	 70.59	0	131738..133852	+	704	115350170	-	Bamb_0114	-	heavy metal translocating P-type ATPase
115	 73.70	+1	133863..134246	+	127	115350171	-	Bamb_0115	-	hypothetical protein
116	 67.71	0	134492..134971	-	159	115350172	-	Bamb_0116	-	transcription activator, effector binding
117	 67.96	0	135390..136853	+	487	115350173	-	Bamb_0117	-	TM helix repeat-containing protein
118	 67.02	0	137066..138478	+	470	115350174	-	Bamb_0118	-	ethanolamine transproter
119	 68.38	0	138590..139987	+	465	115350175	-	Bamb_0119	-	ethanolamine ammonia lyase large subunit
120	 73.33	+1	139984..140778	+	264	115350176	-	Bamb_0120	-	ethanolamine ammonia-lyase small subunit
121	 68.69	0	140809..141699	-	296	115350177	-	Bamb_0121	-	LysR family transcriptional regulator
122	 74.15	+1	141848..143464	+	538	115350178	-	Bamb_0122	-	major facilitator transporter
123	 68.07	0	143663..144091	-	142	115350179	-	Bamb_0123	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
124	 65.88	0	144409..145935	+	508	115350180	-	Bamb_0124	-	aldehyde dehydrogenase
125	 71.25	+1	146231..146776	+	181	115350181	-	Bamb_0125	-	hypothetical protein
126	 72.66	+1	146962..147996	+	344	115350182	-	Bamb_0126	-	AraC family transcriptional regulator
127	 72.24	+1	148060..149154	-	364	115350183	-	Bamb_0127	-	hypothetical protein
128	 71.42	+1	149151..150854	-	567	115350184	-	Bamb_0128	-	acetolactate synthase 2 catalytic subunit
129	 69.04	0	151019..152407	-	462	115350185	-	Bamb_0129	-	L-serine dehydratase 1
130	 69.83	0	152438..153574	-	378	115350186	-	Bamb_0130	-	hypothetical protein
131	 69.13	0	153727..156654	-	975	115350187	-	Bamb_0131	-	glycine dehydrogenase
132	 63.42	0	156720..157181	-	153	115350188	-	Bamb_0132	-	glycine cleavage system H protein
133	 67.46	0	157215..158348	-	377	115350189	gcvT	Bamb_0133	-	glycine cleavage system aminomethyltransferase T
134	 70.19	0	158800..159168	-	122	115350190	-	Bamb_0134	-	hypothetical protein
135	 70.47	0	159394..160446	-	350	115350191	-	Bamb_0135	-	oxidoreductase domain-containing protein
136	 76.90	+2	160670..161392	-	240	115350192	-	Bamb_0136	-	hypothetical protein
137	 65.61	0	161674..163761	+	695	115350193	-	Bamb_0137	-	UvrD/REP helicase
138	 68.87	0	163850..164758	-	302	115350194	-	Bamb_0138	-	cytochrome c, class I
139	 60.70	-1	165180..165464	-	94	115350195	-	Bamb_0139	-	XRE family transcriptional regulator
140	 55.24	-2	165457..165771	-	104	115350196	-	Bamb_0140	-	hypothetical protein
141	 70.89	0	165992..167578	+	528	115350197	-	Bamb_0141	-	hypothetical protein
142	 71.76	+1	167606..170392	-	928	115350198	-	Bamb_0142	-	hypothetical protein
143	 67.74	0	170389..171597	-	402	115350199	-	Bamb_0143	-	TDP-4-oxo-6-deoxy-D-glucose transaminase
144	 67.74	0	171659..172309	-	216	115350200	-	Bamb_0144	-	SAM-binding motif-containing protein
145	 66.67	0	172320..173027	-	235	115350201	-	Bamb_0145	-	hypothetical protein
146	 69.05	0	173033..174418	-	461	115350202	-	Bamb_0146	-	FAD dependent oxidoreductase
147	 66.79	0	174415..175200	-	261	115350203	-	Bamb_0147	-	hypothetical protein
148	 69.35	0	175541..177400	+	619	115350204	-	Bamb_0148	-	TPR repeat-containing protein
149	 65.92	0	177397..178338	+	313	115350205	-	Bamb_0149	-	NAD-dependent epimerase/dehydratase
150	 69.24	0	178335..179540	+	401	115350206	-	Bamb_0150	-	putative methyltransferase
151	 69.86	0	179553..182054	+	833	115350207	-	Bamb_0151	-	TPR repeat-containing protein
152	 68.36	0	182051..184537	+	828	115350208	-	Bamb_0152	-	TPR repeat-containing protein
153	 70.02	0	184534..186798	+	754	115350209	-	Bamb_0153	-	TPR repeat-containing protein
154	 67.68	0	186944..187240	-	98	115350210	-	Bamb_0154	-	hypothetical protein
155	 66.18	0	187276..188703	-	475	115350211	-	Bamb_0155	-	flagellar hook-associated 2 domain-containing protein
156	 63.27	0	188891..189715	-	274	115350212	-	Bamb_0156	-	flagellin
157	 57.28	-2	190257..190469	+	70	115350213	-	Bamb_0157	-	30S ribosomal protein S21
158	 64.85	0	190724..191329	-	201	115350214	-	Bamb_0158	-	DNA-3-methyladenine glycosylase I
159	 75.28	+1	191471..192352	+	293	115350215	-	Bamb_0159	-	ATPase, BadF/BadG/BcrA/BcrD type
160	 67.12	0	192601..193476	+	291	115350216	-	Bamb_0160	-	Cof-like hydrolase
161	 67.34	0	193582..194322	-	246	115350217	-	Bamb_0161	-	aquaporin Z
162	 62.63	-1	194621..194917	+	98	115350218	-	Bamb_0162	-	histone family protein nucleoid-structuring protein H-NS
163	 67.04	0	195021..196085	-	354	115350219	-	Bamb_0163	-	glycosyl transferase, group 1
164	 63.86	0	196752..197072	+	106	115350220	-	Bamb_0164	-	transcriptional activator FlhD
165	 65.59	0	197168..197722	+	184	115350221	-	Bamb_0165	-	transcriptional activator FlhC
166	 64.46	0	197902..198762	+	286	115350222	-	Bamb_0166	-	flagellar motor protein MotA
167	 67.55	0	198776..199795	+	339	115350223	motB	Bamb_0167	-	flagellar motor protein MotB
168	 69.58	0	199975..200352	+	125	115350224	-	Bamb_0168	-	response regulator receiver protein
169	 69.84	0	200386..202620	+	744	115350225	-	Bamb_0169	-	CheA signal transduction histidine kinases
170	 63.95	0	202669..203184	+	171	115350226	-	Bamb_0170	-	CheW protein
171	 71.39	+1	203222..205168	+	648	115350227	-	Bamb_0171	-	methyl-accepting chemotaxis sensory transducer
172	 68.81	0	205172..206149	+	325	115350228	-	Bamb_0172	-	MCP methyltransferase, CheR-type
173	 70.60	0	206146..206907	+	253	115350229	-	Bamb_0173	-	chemoreceptor glutamine deamidase CheD
174	 70.27	0	206913..207995	+	360	115350230	-	Bamb_0174	-	chemotaxis-specific methylesterase
175	 64.39	0	208063..208458	+	131	115350231	-	Bamb_0175	-	response regulator receiver protein
176	 69.67	0	208460..209191	+	243	115350232	-	Bamb_0176	-	chemotaxis regulator CheZ
177	 74.40	+1	209489..209992	+	167	115350233	-	Bamb_0177	-	hypothetical protein
178	 66.75	0	210009..211238	+	409	115350234	-	Bamb_0178	-	hypothetical protein
179	 68.07	0	211406..211903	+	165	115350235	-	Bamb_0179	-	3-demethylubiquinone-9 3-methyltransferase
180	 65.09	0	212268..212648	+	126	115350236	-	Bamb_0180	-	hypothetical protein
181	 69.58	0	212915..214114	+	399	115350237	flhB	Bamb_0181	-	flagellar biosynthesis protein FlhB
182	 67.90	0	214111..216213	+	700	115350238	flhA	Bamb_0182	-	flagellar biosynthesis protein FlhA
183	 70.85	0	216210..217976	+	588	115350239	flhF	Bamb_0183	-	flagellar biosynthesis regulator FlhF
184	 72.41	+1	217969..218787	+	272	115350240	-	Bamb_0184	-	flagellar biosynthesisprotein, FlhG
185	 68.44	0	218805..219536	+	243	115350241	fliA	Bamb_0185	-	flagellar biosynthesis sigma factor
186	 63.85	0	219887..221305	+	472	115350242	-	Bamb_0186	-	S-adenosyl-L-homocysteine hydrolase
187	 62.15	-1	221461..221814	+	117	115350243	-	Bamb_0187	-	membrane protein of unknown function
188	 66.55	0	221839..222669	+	276	115350244	-	Bamb_0188	-	5,10-methylenetetrahydrofolate reductase
189	 72.01	+1	222772..224250	-	492	115350245	-	Bamb_0189	-	amidase
190	 69.41	0	224331..225023	-	230	115350246	-	Bamb_0190	-	carboxymethylenebutenolidase
191	 75.19	+1	225305..226384	+	359	115350247	-	Bamb_0191	-	2-nitropropane dioxygenase, NPD
192	 63.87	0	226836..227978	+	380	115350248	-	Bamb_0192	-	extracellular ligand-binding receptor
193	 72.10	+1	228099..229313	-	404	115350249	-	Bamb_0193	-	major facilitator transporter
194	 72.29	+1	229827..230573	+	248	115350250	-	Bamb_0194	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
195	 62.24	-1	230929..231222	+	97	115350251	-	Bamb_0195	-	histone family protein nucleoid-structuring protein H-NS
196	 66.42	0	231404..232618	+	404	115350252	-	Bamb_0196	-	cation diffusion facilitator family transporter
197	 62.85	0	232646..233116	-	156	115350253	-	Bamb_0197	-	AsnC family transcriptional regulator
198	 66.67	0	233196..233855	-	219	115350254	-	Bamb_0198	-	hypothetical protein
199	 66.82	0	233852..234496	-	214	115350255	-	Bamb_0199	-	beta-lactamase domain-containing protein
200	 63.89	0	235155..235766	+	203	115350256	-	Bamb_0200	-	rare lipoprotein A
201	 71.49	+1	235863..236753	-	296	115350257	-	Bamb_0201	-	hypothetical protein
202	 72.73	+1	236800..237228	+	142	115350258	-	Bamb_0202	-	hypothetical protein
203	 70.09	0	237355..237939	+	194	115350259	-	Bamb_0203	-	phosphoheptose isomerase
204	 67.67	0	237957..238754	+	265	115350260	-	Bamb_0204	-	transport-associated
205	 68.33	0	238751..239110	+	119	115350261	-	Bamb_0205	-	cytochrome c, class I
206	 60.32	-1	240397..242964	+	855	115350262	-	Bamb_0207	-	Rhs element Vgr protein
66.92	MEAN

4.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.