version 1.0
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545 3213 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1340 71.51 +1 1476758..1477687 + 309 115351396 - Bamb_1343 - ribokinase 1341 68.41 0 1477751..1479070 + 439 115351397 - Bamb_1344 - major facilitator transporter 1342 65.72 0 1479120..1480067 + 315 115351398 - Bamb_1345 - dihydrodipicolinate synthetase 1343 65.41 0 1480181..1481854 - 557 115351399 - Bamb_1346 - electron-transferring-flavoprotein dehydrogenase 1344 64.74 0 1482033..1482809 + 258 115351400 - Bamb_1347 - short chain dehydrogenase 1345 64.81 0 1482842..1483273 + 143 115351401 - Bamb_1348 - thioesterase superfamily protein 1346 66.30 0 1483380..1483925 - 181 115351402 - Bamb_1349 - LuxR family transcriptional regulator 1347 64.96 0 1484149..1484853 + 234 115351403 - Bamb_1350 - 3-oxoacid CoA-transferase, A subunit 1348 65.89 0 1484855..1485496 + 213 115351404 - Bamb_1351 - 3-oxoacid CoA-transferase, B subunit 1349 71.71 +1 1485574..1486188 - 204 115351405 - Bamb_1352 - short chain dehydrogenase 1350 67.84 0 1486325..1487350 - 341 115351406 - Bamb_1353 - polysaccharide deacetylase 1351 70.07 0 1487362..1487919 - 185 115351407 - Bamb_1354 - hypothetical protein 1352 69.65 0 1488058..1488963 + 301 115351408 - Bamb_1355 - LysR family transcriptional regulator 1353 69.46 0 1489096..1489989 + 297 115351409 - Bamb_1356 - alpha/beta hydrolase fold 1354 65.54 0 1490064..1490417 + 117 115351410 - Bamb_1357 - endoribonuclease L-PSP 1355 67.75 0 1490457..1492676 + 739 115351411 - Bamb_1358 - (p)ppGpp synthetase I, SpoT/RelA 1356 61.84 -1 1493119..1495026 + 635 115351412 thrS Bamb_1359 - threonyl-tRNA synthetase 1357 57.11 -2 1495130..1495600 + 156 115351413 - Bamb_1360 - translation initiation factor IF-3 1358 55.69 -2 1495743..1495988 + 81 115351414 rpmI Bamb_1361 - 50S ribosomal protein L35 1359 60.00 -1 1496019..1496378 + 119 115351415 rplT Bamb_1362 - 50S ribosomal protein L20 1360 63.54 0 1496518..1497540 + 340 162389966 pheS Bamb_1363 - phenylalanyl-tRNA synthetase subunit alpha 1361 66.05 0 1497637..1500066 + 809 115351417 pheT Bamb_1364 - phenylalanyl-tRNA synthetase subunit beta 1362 62.37 -1 1500130..1500525 + 131 115351418 ihfA Bamb_1365 - integration host factor subunit alpha 1363 64.49 0 1500587..1501000 + 137 115351419 - Bamb_1366 - MerR family transcriptional regulator 1364 66.71 0 1501087..1503297 - 736 115351420 - Bamb_1367 - hypothetical protein 1365 64.29 0 1503851..1504564 + 237 115351421 - Bamb_1368 - hypothetical protein 1366 64.52 0 1504955..1506163 + 402 115351422 - Bamb_1369 - uncharacterized lipoprotein-like protein 1367 61.24 -1 1506822..1507079 - 85 115351423 - Bamb_1370 - hypothetical protein 1368 61.90 -1 1507216..1507488 - 90 115351424 - Bamb_1371 - hypothetical protein 1369 68.15 0 1507711..1508385 - 224 115351425 - Bamb_1372 - hypothetical protein 1370 63.52 0 1508585..1508902 + 105 115351426 - Bamb_1373 - hypothetical protein 1371 67.86 0 1509092..1509343 - 83 115351427 - Bamb_1374 - hypothetical protein 1372 67.16 0 1509543..1509944 - 133 115351428 - Bamb_1375 - hypothetical protein 1373 69.88 0 1510374..1511276 + 300 115351429 - Bamb_1376 - LysR family transcriptional regulator 1374 70.07 0 1511341..1512543 + 400 115351430 - Bamb_1377 - aspartate aminotransferase 1375 67.64 0 1512815..1513837 + 340 115351431 - Bamb_1378 - putative transcriptional regulator 1376 71.26 +1 1513898..1515616 + 572 115351432 - Bamb_1379 - pseudouridine synthase, Rsu 1377 58.39 -1 1516033..1516491 + 152 115351433 - Bamb_1380 - hypothetical protein 1378 62.80 0 1516491..1517966 + 491 115351434 nusA Bamb_1381 - transcription elongation factor NusA 1379 65.95 0 1518058..1520973 + 971 115351435 infB Bamb_1382 - translation initiation factor IF-2 1380 59.15 -1 1521088..1521486 + 132 115351436 rbfA Bamb_1383 - ribosome-binding factor A 1381 67.85 0 1521500..1522432 + 310 115351437 truB Bamb_1384 - tRNA pseudouridine synthase B 1382 66.35 0 1522528..1524087 - 519 115351438 - Bamb_1385 - EmrB/QacA family drug resistance transporter 1383 67.08 0 1524116..1525339 - 407 115351439 - Bamb_1386 - secretion protein HlyD family protein 1384 69.00 0 1525392..1526888 - 498 115351440 - Bamb_1387 - RND efflux system outer membrane lipoprotein 1385 65.25 0 1526973..1527467 - 164 115351441 - Bamb_1388 - MarR family transcriptional regulator 1386 65.08 0 1527790..1529616 + 608 115351442 - Bamb_1389 - GTP-binding protein TypA 1387 63.00 0 1529934..1532798 + 954 115351443 kgd Bamb_1390 - alpha-ketoglutarate decarboxylase 1388 65.02 0 1532934..1534211 + 425 115351444 - Bamb_1391 - dihydrolipoamide acetyltransferase 1389 64.50 0 1534293..1535723 + 476 115351445 - Bamb_1392 - dihydrolipoamide dehydrogenase 1390 63.48 0 1535823..1536920 + 365 115351446 - Bamb_1393 - AFG1 family ATPase 1391 63.75 0 1537065..1537475 + 136 115351447 - Bamb_1394 - hypothetical protein 1392 64.50 0 1537575..1538036 - 153 115351448 - Bamb_1395 - hypothetical protein 1393 63.76 0 1538202..1539887 - 561 115351449 - Bamb_1396 - polypeptide-transport-associated domain-containing protein 1394 71.70 +1 1540033..1541304 - 423 115351450 - Bamb_1397 - hypothetical protein 1395 72.73 +1 1541345..1542928 - 527 115351451 - Bamb_1398 - hypothetical protein 1396 55.15 -2 1543592..1543756 + 54 115351452 - Bamb_1399 - Flp/Fap pilin component 1397 60.28 -1 1543837..1544337 + 166 115351453 - Bamb_1400 - peptidase A24A, prepilin type IV 1398 63.27 0 1544334..1544804 + 156 115351454 - Bamb_1401 - TadE family protein 1399 69.76 0 1544893..1545798 + 301 115351455 - Bamb_1402 - CpaB family Flp pilus assembly protein 1400 64.49 0 1545863..1547197 + 444 115351456 - Bamb_1403 - type II and III secretion system protein 1401 67.60 0 1547243..1548523 + 426 115351457 - Bamb_1404 - response regulator receiver protein 1402 64.69 0 1548527..1549891 + 454 115351458 - Bamb_1405 - type II secretion system protein E 1403 67.70 0 1549884..1550852 + 322 115351459 - Bamb_1406 - type II secretion system protein 1404 65.48 0 1550857..1551870 + 337 115351460 - Bamb_1407 - type II secretion system protein 1405 66.44 0 1551895..1552782 + 295 115351461 - Bamb_1408 - TPR repeat-containing protein 1406 63.96 0 1552806..1553138 + 110 115351462 - Bamb_1409 - hypothetical protein 1407 65.27 0 1553150..1555015 + 621 115351463 - Bamb_1410 - membrane protein 1408 65.09 0 1555033..1556424 + 463 115351464 - Bamb_1411 - sigma-54 dependent trancsriptional regulator 1409 66.81 0 1556480..1557187 + 235 115351465 - Bamb_1412 - hypothetical protein 1410 69.71 0 1557271..1557861 - 196 115351466 - Bamb_1413 - RNA chaperone Hfq 1411 64.18 0 1558157..1558438 + 93 115351467 - Bamb_1414 - hypothetical protein 1412 66.34 0 1558466..1559395 - 309 115351468 - Bamb_1415 - hypothetical protein 1413 65.41 0 1559425..1561179 - 584 115351469 - Bamb_1416 - AMP-dependent synthetase and ligase 1414 68.62 0 1561372..1562190 - 272 115351470 - Bamb_1417 - TetR family transcriptional regulator 1415 66.58 0 1562407..1563627 - 406 115351471 - Bamb_1418 - major facilitator transporter 1416 68.88 0 1563919..1564461 + 180 115351472 - Bamb_1419 - GCN5-related N-acetyltransferase 1417 64.43 0 1564601..1565227 + 208 115351473 - Bamb_1420 - hypothetical protein 1418 69.63 0 1565252..1566970 + 572 115351474 - Bamb_1421 - sulphate transporter 1419 72.24 +1 1567010..1567960 - 316 115351475 - Bamb_1422 - ribokinase-like domain-containing protein 1420 64.66 0 1568088..1569032 - 314 115351476 - Bamb_1423 - periplasmic binding protein/LacI transcriptional regulator 1421 68.30 0 1569118..1570155 - 345 115351477 - Bamb_1424 - inner-membrane translocator 1422 68.98 0 1570196..1571749 - 517 115351478 - Bamb_1425 - ABC transporter related 1423 71.23 +1 1571736..1572983 - 415 115351479 - Bamb_1426 - ROK family protein 1424 67.52 0 1574467..1576797 + 776 115351480 - Bamb_1427 - periplasmic sensor signal transduction histidine kinase 1425 64.61 0 1577239..1580157 - 972 115351481 - Bamb_1428 - chitinase 1426 63.38 0 1580467..1581927 + 486 115351482 - Bamb_1429 - N-acetylglucosamine-binding protein A 1427 64.63 0 1582198..1582638 + 146 115351483 - Bamb_1430 - general secretion pathway protein G 1428 65.69 0 1582613..1583125 + 170 115351484 - Bamb_1431 - lytic transglycosylase, catalytic 1429 68.70 0 1583128..1584309 + 393 115351485 - Bamb_1432 - type II secretion system protein 1430 68.81 0 1584364..1585998 + 544 115351486 - Bamb_1433 - type II secretion system protein E 1431 76.17 +2 1585979..1586746 + 255 115351487 - Bamb_1434 - hypothetical protein 1432 67.04 0 1586743..1587273 + 176 115351488 - Bamb_1435 - hypothetical protein 1433 68.11 0 1587270..1587824 + 184 115351489 - Bamb_1436 - hypothetical protein 1434 72.29 +1 1587821..1588300 + 159 115351490 - Bamb_1437 - hypothetical protein 1435 69.00 0 1588332..1590770 + 812 115351491 - Bamb_1438 - type II and III secretion system protein 1436 67.29 0 1590767..1591249 + 160 115351492 - Bamb_1439 - general secretion pathway GspG related transmembrane protein 1437 68.18 0 1591224..1591619 + 131 115351493 - Bamb_1440 - type II secretion system protein G 1438 70.19 0 1591606..1592145 + 179 115351494 - Bamb_1441 - hypothetical protein 1439 63.89 0 1592159..1592842 + 227 115351495 - Bamb_1442 - two component transcriptional regulator 66.92 MEAN 4.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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