version 1.0
Burkholderia cepacia AMMD chromosome 1, complete sequence - 1..3556545 3213 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1298 66.45 0 1425019..1425948 - 309 115351354 - Bamb_1301 - xylose isomerase domain-containing protein 1299 71.39 +1 1426010..1427893 - 627 115351355 - Bamb_1302 - thiamine pyrophosphate binding domain-containing protein 1300 70.81 0 1427940..1429895 - 651 115351356 - Bamb_1303 - ribokinase-like domain-containing protein 1301 65.38 0 1430213..1431148 + 311 115351357 - Bamb_1304 - periplasmic binding protein/LacI transcriptional regulator 1302 66.98 0 1431217..1432791 + 524 115351358 - Bamb_1305 - ABC transporter related 1303 67.06 0 1432818..1433843 + 341 115351359 - Bamb_1306 - inner-membrane translocator 1304 68.09 0 1433881..1434795 + 304 115351360 - Bamb_1307 - xylose isomerase domain-containing protein 1305 68.64 0 1434859..1435872 + 337 115351361 - Bamb_1308 - inositol 2-dehydrogenase 1306 69.15 0 1435931..1436857 + 308 115351362 - Bamb_1309 - xylose isomerase domain-containing protein 1307 67.43 0 1436921..1438093 + 390 115351363 - Bamb_1310 - oxidoreductase domain-containing protein 1308 67.68 0 1438365..1439249 + 294 115351364 - Bamb_1311 - RpiR family transcriptional regulator 1309 69.56 0 1439305..1440825 - 506 115351365 - Bamb_1312 - methylmalonate-semialdehyde dehydrogenase 1310 72.01 +1 1440934..1441869 + 311 115351366 - Bamb_1313 - LysR family transcriptional regulator 1311 62.28 -1 1442001..1442228 + 75 115351367 - Bamb_1314 - SirA family protein 1312 72.56 +1 1442453..1442842 + 129 115351368 - Bamb_1315 - hypothetical protein 1313 64.26 0 1443189..1443893 + 234 115351369 - Bamb_1316 - two component transcriptional regulator 1314 71.51 +1 1443890..1445251 + 453 115351370 - Bamb_1317 - peptidoglycan-binding LysM 1315 70.48 0 1445262..1447649 + 795 115351371 - Bamb_1318 - periplasmic sensor signal transduction histidine kinase 1316 71.71 +1 1447687..1448301 + 204 115351372 - Bamb_1319 - hypothetical protein 1317 65.54 0 1448362..1449246 - 294 115351373 - Bamb_1320 - UTP-glucose-1-phosphate uridylyltransferase 1318 66.42 0 1449334..1452201 - 955 115351374 valS Bamb_1321 - valyl-tRNA synthetase 1319 67.70 0 1452257..1454779 + 840 115351375 - Bamb_1322 - UvrD/REP helicase 1320 69.64 0 1454779..1455585 + 268 115351376 - Bamb_1323 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1321 57.97 -2 1455740..1456222 + 160 115351377 - Bamb_1324 - hypothetical protein 1322 59.78 -1 1456219..1456494 + 91 115351378 - Bamb_1325 - hypothetical protein 1323 67.31 0 1456564..1457802 - 412 115351379 - Bamb_1326 - major facilitator transporter 1324 71.02 0 1458198..1459874 + 558 115351380 - Bamb_1327 - methyl-accepting chemotaxis sensory transducer 1325 67.12 0 1459893..1460771 - 292 115351381 - Bamb_1328 - secretion protein HlyD family protein 1326 61.76 -1 1460784..1460987 - 67 115351382 - Bamb_1329 - hypothetical protein 1327 69.66 0 1460984..1463185 - 733 115351383 - Bamb_1330 - fusaric acid resistance protein region 1328 72.55 +1 1463201..1464832 - 543 115351384 - Bamb_1331 - RND efflux system outer membrane lipoprotein 1329 67.41 0 1464990..1465931 + 313 115351385 - Bamb_1332 - LysR family transcriptional regulator 1330 66.67 0 1466272..1467099 - 275 115351386 - Bamb_1333 - metallophosphoesterase 1331 69.48 0 1467125..1468546 - 473 115351387 - Bamb_1334 - FAD linked oxidase domain-containing protein 1332 72.82 +1 1468567..1468956 - 129 115351388 - Bamb_1335 - membrane protein-like protein 1333 71.18 0 1468953..1469573 - 206 115351389 - Bamb_1336 - flavodoxin/nitric oxide synthase 1334 67.72 0 1469718..1471049 + 443 115351390 - Bamb_1337 - putative ribonuclease BN 1335 63.24 0 1471068..1471271 - 67 115351391 - Bamb_1338 - membrane protein 1336 60.96 -1 1471543..1471998 + 151 115351392 - Bamb_1339 - XRE family transcriptional regulator 1337 66.30 0 1472141..1474075 + 644 115351393 - Bamb_1340 - phospholipid/glycerol acyltransferase 1338 68.57 0 1474273..1475373 + 366 115351394 - Bamb_1341 - chorismate synthase 1339 70.19 0 1475443..1476519 - 358 115351395 - Bamb_1342 - LacI family transcription regulator 1340 71.51 +1 1476758..1477687 + 309 115351396 - Bamb_1343 - ribokinase 1341 68.41 0 1477751..1479070 + 439 115351397 - Bamb_1344 - major facilitator transporter 1342 65.72 0 1479120..1480067 + 315 115351398 - Bamb_1345 - dihydrodipicolinate synthetase 1343 65.41 0 1480181..1481854 - 557 115351399 - Bamb_1346 - electron-transferring-flavoprotein dehydrogenase 1344 64.74 0 1482033..1482809 + 258 115351400 - Bamb_1347 - short chain dehydrogenase 1345 64.81 0 1482842..1483273 + 143 115351401 - Bamb_1348 - thioesterase superfamily protein 1346 66.30 0 1483380..1483925 - 181 115351402 - Bamb_1349 - LuxR family transcriptional regulator 1347 64.96 0 1484149..1484853 + 234 115351403 - Bamb_1350 - 3-oxoacid CoA-transferase, A subunit 1348 65.89 0 1484855..1485496 + 213 115351404 - Bamb_1351 - 3-oxoacid CoA-transferase, B subunit 1349 71.71 +1 1485574..1486188 - 204 115351405 - Bamb_1352 - short chain dehydrogenase 1350 67.84 0 1486325..1487350 - 341 115351406 - Bamb_1353 - polysaccharide deacetylase 1351 70.07 0 1487362..1487919 - 185 115351407 - Bamb_1354 - hypothetical protein 1352 69.65 0 1488058..1488963 + 301 115351408 - Bamb_1355 - LysR family transcriptional regulator 1353 69.46 0 1489096..1489989 + 297 115351409 - Bamb_1356 - alpha/beta hydrolase fold 1354 65.54 0 1490064..1490417 + 117 115351410 - Bamb_1357 - endoribonuclease L-PSP 1355 67.75 0 1490457..1492676 + 739 115351411 - Bamb_1358 - (p)ppGpp synthetase I, SpoT/RelA 1356 61.84 -1 1493119..1495026 + 635 115351412 thrS Bamb_1359 - threonyl-tRNA synthetase 1357 57.11 -2 1495130..1495600 + 156 115351413 - Bamb_1360 - translation initiation factor IF-3 1358 55.69 -2 1495743..1495988 + 81 115351414 rpmI Bamb_1361 - 50S ribosomal protein L35 1359 60.00 -1 1496019..1496378 + 119 115351415 rplT Bamb_1362 - 50S ribosomal protein L20 1360 63.54 0 1496518..1497540 + 340 162389966 pheS Bamb_1363 - phenylalanyl-tRNA synthetase subunit alpha 1361 66.05 0 1497637..1500066 + 809 115351417 pheT Bamb_1364 - phenylalanyl-tRNA synthetase subunit beta 1362 62.37 -1 1500130..1500525 + 131 115351418 ihfA Bamb_1365 - integration host factor subunit alpha 1363 64.49 0 1500587..1501000 + 137 115351419 - Bamb_1366 - MerR family transcriptional regulator 1364 66.71 0 1501087..1503297 - 736 115351420 - Bamb_1367 - hypothetical protein 1365 64.29 0 1503851..1504564 + 237 115351421 - Bamb_1368 - hypothetical protein 1366 64.52 0 1504955..1506163 + 402 115351422 - Bamb_1369 - uncharacterized lipoprotein-like protein 1367 61.24 -1 1506822..1507079 - 85 115351423 - Bamb_1370 - hypothetical protein 1368 61.90 -1 1507216..1507488 - 90 115351424 - Bamb_1371 - hypothetical protein 1369 68.15 0 1507711..1508385 - 224 115351425 - Bamb_1372 - hypothetical protein 1370 63.52 0 1508585..1508902 + 105 115351426 - Bamb_1373 - hypothetical protein 1371 67.86 0 1509092..1509343 - 83 115351427 - Bamb_1374 - hypothetical protein 1372 67.16 0 1509543..1509944 - 133 115351428 - Bamb_1375 - hypothetical protein 1373 69.88 0 1510374..1511276 + 300 115351429 - Bamb_1376 - LysR family transcriptional regulator 1374 70.07 0 1511341..1512543 + 400 115351430 - Bamb_1377 - aspartate aminotransferase 1375 67.64 0 1512815..1513837 + 340 115351431 - Bamb_1378 - putative transcriptional regulator 1376 71.26 +1 1513898..1515616 + 572 115351432 - Bamb_1379 - pseudouridine synthase, Rsu 1377 58.39 -1 1516033..1516491 + 152 115351433 - Bamb_1380 - hypothetical protein 1378 62.80 0 1516491..1517966 + 491 115351434 nusA Bamb_1381 - transcription elongation factor NusA 1379 65.95 0 1518058..1520973 + 971 115351435 infB Bamb_1382 - translation initiation factor IF-2 1380 59.15 -1 1521088..1521486 + 132 115351436 rbfA Bamb_1383 - ribosome-binding factor A 1381 67.85 0 1521500..1522432 + 310 115351437 truB Bamb_1384 - tRNA pseudouridine synthase B 1382 66.35 0 1522528..1524087 - 519 115351438 - Bamb_1385 - EmrB/QacA family drug resistance transporter 1383 67.08 0 1524116..1525339 - 407 115351439 - Bamb_1386 - secretion protein HlyD family protein 1384 69.00 0 1525392..1526888 - 498 115351440 - Bamb_1387 - RND efflux system outer membrane lipoprotein 1385 65.25 0 1526973..1527467 - 164 115351441 - Bamb_1388 - MarR family transcriptional regulator 1386 65.08 0 1527790..1529616 + 608 115351442 - Bamb_1389 - GTP-binding protein TypA 1387 63.00 0 1529934..1532798 + 954 115351443 kgd Bamb_1390 - alpha-ketoglutarate decarboxylase 1388 65.02 0 1532934..1534211 + 425 115351444 - Bamb_1391 - dihydrolipoamide acetyltransferase 1389 64.50 0 1534293..1535723 + 476 115351445 - Bamb_1392 - dihydrolipoamide dehydrogenase 1390 63.48 0 1535823..1536920 + 365 115351446 - Bamb_1393 - AFG1 family ATPase 1391 63.75 0 1537065..1537475 + 136 115351447 - Bamb_1394 - hypothetical protein 1392 64.50 0 1537575..1538036 - 153 115351448 - Bamb_1395 - hypothetical protein 1393 63.76 0 1538202..1539887 - 561 115351449 - Bamb_1396 - polypeptide-transport-associated domain-containing protein 1394 71.70 +1 1540033..1541304 - 423 115351450 - Bamb_1397 - hypothetical protein 1395 72.73 +1 1541345..1542928 - 527 115351451 - Bamb_1398 - hypothetical protein 1396 55.15 -2 1543592..1543756 + 54 115351452 - Bamb_1399 - Flp/Fap pilin component 1397 60.28 -1 1543837..1544337 + 166 115351453 - Bamb_1400 - peptidase A24A, prepilin type IV 66.92 MEAN 4.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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