IslandPathversion 1.0

IslandPath Analysis: Buchnera aphidicola str. Cc (Cinara cedri)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 21.40 STD DEV: 4.64
Buchnera aphidicola str. Cc (Cinara cedri), complete genome - 1..416380
357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
229	 14.71	-1	281693..282202	+	169	116515179	rimM	BCc_247	-	16s rRNA processing protein
230	 19.94	0	282214..282900	+	228	116515180	trmD	BCc_248	-	hypothetical protein
231	 22.13	0	282971..283318	+	115	116515181	rplS	BCc_249	-	50S ribosomal protein L19
232	 22.88	0	284943..285401	+	152	116515182	aroQ	BCc_251	-	3-dehydroquinate dehydratase
233	 15.29	-1	285441..285767	-	108	116515183	fis	BCc_252	-	DNA-bending protein
234	 21.14	0	285849..286813	-	321	116515184	rluD	BCc_253	-	RluD
235	 16.33	-1	287031..289676	+	881	116515185	alaS	BCc_254	-	hypothetical protein
236	 26.67	+1	289786..289965	+	59	116515186	csrA	BCc_255	-	hypothetical protein
237	 20.96	0	290550..290840	-	96	116515187	zapA	BCc_258	-	ZapA
238	 23.29	0	290883..291539	-	218	116515188	rpiA	BCc_259	-	hypothetical protein
239	 19.94	0	292106..293755	+	549	116515189	glnS	BCc_263	-	glutaminyl-tRNA synthetase
240	 24.63	0	293837..295135	+	432	116515190	eno	BCc_264	-	hypothetical protein
241	 14.88	-1	295241..297901	+	886	116515191	polA	BCc_265	-	5'-3' exonuclease domain-containing protein
242	 16.75	-1	297906..298514	-	202	116515192	engB	BCc_266	-	EngB
243	 24.46	0	298730..300544	+	604	116515193	typA	BCc_267	-	GTP-binding elongation factor family protein
244	 15.28	-1	300651..301625	-	324	116515194	ygfZ	BCc_268	-	YgfZ
245	 18.93	0	301781..302879	+	365	116515195	prfB	BCc_269	-	hypothetical protein
246	 18.09	0	302882..304390	+	502	116515196	lysS	BCc_270	-	hypothetical protein
247	 21.90	0	304496..305746	+	416	116515197	lysA	BCc_271	-	diaminopimelate decarboxylase
248	 20.72	0	305849..307156	+	435	116515198	miaB	BCc_272	-	hypothetical protein
249	 17.62	0	307190..307660	+	156	116515199	ybeY	BCc_273	-	YbeY
250	 19.10	0	307714..310257	+	847	116515200	leuS	BCc_274	-	LeuS
251	 10.17	-2	310302..311294	+	330	116515201	holA	BCc_275	-	DNA polymerase III, d subunit
252	 15.19	-1	311350..311586	+	78	116515202	yhhP	BCc_276	-	YhhP
253	 23.57	0	311592..312707	-	371	116515203	asd	BCc_277	-	aspartate-semialdehyde dehydrogenase
254	 22.74	0	312981..314132	+	383	116515204	pgk	BCc_278	-	hypothetical protein
255	 21.36	0	314190..315266	+	358	116515205	fba	BCc_279	-	fructose-bisphosphate aldolase
256	 22.55	0	315463..316371	+	302	116515206	yggB	BCc_280	-	YggB
257	 12.18	-1	316461..319589	+	1042	116515207	recC	BCc_281	-	RecC
258	 13.96	-1	319605..323108	+	1167	116515208	recB	BCc_282	-	hypothetical protein
259	 15.38	-1	323110..324891	+	593	116515209	recD	BCc_283	-	hypothetical protein
260	 17.72	0	325171..325599	+	142	116515210	nusB	BCc_285	-	hypothetical protein
261	 15.85	-1	325934..326854	-	306	116515211	cyoE	BCc_287	-	CyoE
262	 10.49	-2	326827..327150	-	107	116515212	cyoD	BCc_288	-	CyoD
263	 17.09	0	327188..327772	-	194	116515213	cyoC	BCc_289	-	CyoC
264	 25.89	0	327820..329793	-	657	116515214	cyoB	BCc_290	-	CyoB
265	 17.52	0	329851..330729	-	292	116515215	cyoA	BCc_291	-	CyoA
266	 13.67	-1	331217..331516	+	99	116515216	bolA	BCc_292	-	BolA
267	 23.22	0	331724..332326	+	200	116515217	clpP	BCc_293	-	hypothetical protein
268	 21.54	0	332379..333641	+	420	116515218	clpX	BCc_294	-	ATP-dependent protease ATP-binding subunit
269	 24.14	0	333749..336097	+	782	116515219	lon	BCc_295	-	DNA-binding ATP-dependent protease La
270	 19.13	0	338177..339901	+	574	116515220	mdlA	BCc_297	-	ABC transporter ATP-binding protein
271	 18.18	0	339933..341687	+	584	116515221	mdlB	BCc_298	-	ABC transporter ATP-binding protein
272	 18.70	0	341914..343020	+	368	116515222	dnaX	BCc_300	-	DNA polymerase III, g and t subunits
273	 21.36	0	343124..343432	+	102	116515223	ybaB	BCc_301	-	hypothetical protein
274	 20.80	0	343540..345414	+	624	116515224	htpG	BCc_302	-	heat shock protein 90
275	 17.67	0	345493..346143	+	216	116515225	adk	BCc_303	-	hypothetical protein
276	 23.16	0	346377..347231	+	284	116515226	folD	BCc_305	-	5,10-methylene-tetrahydrofolate dehydrogenase
277	 19.78	0	347242..348672	-	476	116515227	cysS	BCc_306	-	hypothetical protein
278	 21.21	0	348866..349129	+	87	116515228	ybeD	BCc_307	-	hypothetical protein
279	 36.67	+2	349218..349427	-	69	116515229	cspE	BCc_308	-	cold shock protein CspE
280	 19.93	0	353033..353875	-	280	116515230	aroE	BCc_312	-	hypothetical protein
281	 21.78	0	354044..354493	+	149	116515231	def	BCc_313	-	hypothetical protein
282	 19.85	0	354529..355485	+	318	116515232	fmt	BCc_314	-	hypothetical protein
283	 26.45	+1	355598..355960	-	120	116515233	rplQ	BCc_315	-	50S ribosomal protein L17
284	 28.89	+1	355988..356977	-	329	116515234	rpoA	BCc_316	-	DNA-directed RNA polymerase subunit alpha
285	 25.93	0	357011..357631	-	206	116515235	rpsD	BCc_317	-	30S ribosomal protein S4
286	 32.57	+2	357665..358057	-	130	116515236	rpsK	BCc_318	-	30S ribosomal protein S11
287	 25.83	0	358076..358435	-	119	116515237	rpsM	BCc_319	-	30S ribosomal protein S13
288	 26.50	+1	358535..358651	-	38	116515238	rpmJ	BCc_320	-	50S ribosomal protein L36
289	 21.22	0	358687..359982	-	431	116515239	secY	BCc_321	-	hypothetical protein
290	 25.57	0	360031..360468	-	145	116515240	rplO	BCc_322	-	50S ribosomal protein L15
291	 26.44	+1	360480..360653	-	57	116515241	rpmD	BCc_323	-	50S ribosomal subunit protein L30
292	 28.69	+1	360678..361172	-	164	116515242	rpsE	BCc_324	-	30S ribosomal protein S5
293	 25.47	0	361191..361559	-	122	116515243	rplR	BCc_325	-	50S ribosomal protein L18
294	 24.81	0	361561..362100	-	179	116515244	rplF	BCc_326	-	50S ribosomal protein L6
295	 23.16	0	362138..362530	-	130	116515245	rpsH	BCc_327	-	30S ribosomal protein S8
296	 30.39	+1	362584..362889	-	101	116515246	rpsN	BCc_328	-	30S ribosomal protein S14
297	 23.33	0	362908..363447	-	179	116515247	rplE	BCc_329	-	50S ribosomal protein L5
298	 23.27	0	363466..363783	-	105	116515248	rplX	BCc_330	-	50S ribosomal protein L24
299	 30.91	+2	363805..364176	-	123	116515249	rplN	BCc_331	-	50S ribosomal protein L14
300	 20.78	0	364315..364569	-	84	116515250	rpsQ	BCc_332	-	30S ribosomal protein S17
301	 16.67	-1	364566..364763	-	65	116515251	rpmC	BCc_333	-	50S ribosomal protein L29
302	 29.93	+1	364766..365176	-	136	116515252	rplP	BCc_334	-	50S ribosomal protein L16
303	 29.94	+1	365198..365905	-	235	116515253	rpsC	BCc_335	-	30S ribosomal protein S3
304	 26.67	+1	365883..366257	-	124	116515254	rplV	BCc_336	-	50S ribosomal protein L22
305	 28.07	+1	366275..366559	-	94	116515255	rpsS	BCc_337	-	30S ribosomal protein S19
306	 32.00	+2	366579..367400	-	273	116515256	rplB	BCc_338	-	50S ribosomal protein L2
307	 19.80	0	367420..367722	-	100	116515257	rplW	BCc_339	-	50S ribosomal protein L23
308	 25.25	0	367719..368324	-	201	116515258	rplD	BCc_340	-	50S ribosomal protein L4
309	 26.00	0	368345..368971	-	208	116515259	rplC	BCc_341	-	50S ribosomal protein L3
310	 32.37	+2	369022..369333	-	103	116515260	rpsJ	BCc_342	-	30S ribosomal protein S10
311	 31.90	+2	369501..370685	-	394	116515261	tuf	BCc_343	-	elongation factor Tu
312	 30.15	+1	370749..372854	-	701	116515262	fusA	BCc_344	-	hypothetical protein
313	 31.63	+2	372933..373403	-	156	116515263	rpsG	BCc_345	-	30S ribosomal protein S7
314	 32.00	+2	373424..373798	-	124	116515264	rpsL	BCc_346	-	30S ribosomal protein S12
315	 20.07	0	373885..374178	-	97	116515265	yheL	BCc_347	-	YheL
316	 19.72	0	374191..374550	-	119	116515266	yheM	BCc_348	-	YheM
317	 22.90	0	374573..374965	-	130	116515267	yheN	BCc_349	-	YheN
318	 19.27	0	375256..376272	-	338	116515268	trpS	BCc_350	-	hypothetical protein
319	 22.32	0	376327..376989	-	220	116515269	rpe	BCc_351	-	hypothetical protein
320	 21.38	0	377098..378201	-	367	116515270	aroB	BCc_352	-	3-dehydroquinate synthase
321	 21.30	0	378261..378800	-	179	116515271	aroK	BCc_353	-	hypothetical protein
322	 23.54	0	379163..379744	-	193	116515272	yhgI	BCc_355	-	GNT I transport systemmembrane-bound protein
323	 15.46	-1	379835..380623	+	262	116515273	bioH	BCc_356	-	BioH
324	 28.21	+1	380672..381217	-	181	116515274	ssb	BCc_357	-	hypothetical protein
325	 17.19	0	381419..382465	+	348	116515275	dusA	BCc_358	-	tRNA-dihydrouridine synthase A
326	 26.27	+1	382752..384125	+	457	116515276	dnaB	BCc_359	-	hypothetical protein
327	 16.28	-1	384482..384874	+	130	116515277	yqgF	BCc_360	-	YggF
328	 17.36	0	384938..386089	+	383	116515278	yggW	BCc_361	-	YggW
21.40	MEAN

4.64	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.