IslandPath Analysis: Buchnera aphidicola str. Cc (Cinara cedri)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 21.40   STD DEV: 4.64
Buchnera aphidicola str. Cc (Cinara cedri), complete genome - 1..416380
357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
165	 16.51	-1	208553..209539	-	328	116515115	pgl	BCc_179	-	6-phosphogluconolactonase
166	 18.52	0	209599..211650	-	683	116515116	mfd	BCc_180	-	hypothetical protein
167	 26.63	+1	212086..213084	+	332	116515117	gapA	BCc_181	-	hypothetical protein
168	 19.26	0	213225..213764	-	179	116515118	fldA	BCc_182	-	hypothetical protein
169	 19.89	0	214091..214648	+	185	116515119	ybgI	BCc_183	-	YbgI
170	 19.06	0	214894..217695	+	933	116515120	sucA	BCc_184	-	2-oxoglutarate dehydrogenase E1 component
171	 20.13	0	217701..218897	+	398	116515121	sucB	BCc_185	-	2-oxoglutarate dehydrogenase E2 component
172	 22.51	0	219187..219879	+	230	116515122	gpmA	BCc_186	-	hypothetical protein
173	 24.61	0	220001..220963	+	320	116515123	pfkA	BCc_187	-	6-phosphofructokinase
174	 22.61	0	221127..221891	-	254	116515124	tpiA	BCc_188	-	hypothetical protein
175	 22.11	0	222000..222293	-	97	116515125	himD	BCc_189	-	HimD
176	 24.78	0	222342..224012	-	556	116515126	rpsA	BCc_190	-	30S ribosomal protein S1
177	 22.86	0	224252..225559	-	435	116515127	aroA	BCc_191	-	3-phosphoshikimate 1-carboxyvinyltransferase
178	 22.50	0	225626..226714	-	362	116515128	serC	BCc_192	-	phosphoserine aminotransferase
179	 20.97	0	226809..228110	-	433	116515129	serS	BCc_193	-	hypothetical protein
180	 22.63	0	228397..229386	+	329	116515130	trxB	BCc_194	-	hypothetical protein
181	 25.46	0	229401..229616	+	71	116515131	infA	BCc_195	-	hypothetical protein
182	 18.82	0	229678..231393	+	571	116515132	aspS	BCc_196	-	AspS
183	 15.09	-1	231498..232226	+	242	116515133	yebC	BCc_197	-	YebC
184	 24.24	0	232481..233920	-	479	116515134	pykA	BCc_198	-	PykA
185	 17.11	0	234325..235785	+	486	116515135	zwf	BCc_199	-	hypothetical protein
186	 19.64	0	235925..236815	+	296	116515136	htpX	BCc_200	-	hypothetical protein
187	 13.77	-1	237138..238727	+	529	116515137	yoaE	BCc_201	-	YoaE
188	 19.26	0	238727..239401	+	224	116515138	yeaZ	BCc_202	-	YeaZ
189	 16.87	0	239432..239680	-	82	116515139	minE	BCc_203	-	hypothetical protein
190	 26.57	+1	239686..240498	-	270	116515140	minD	BCc_204	-	hypothetical protein
191	 19.36	0	240534..241256	-	240	116515141	minC	BCc_205	-	hypothetical protein
192	 15.99	-1	241436..242467	+	343	116515142	rsmC	BCc_206	-	16S RNA m2G1207 methylase
193	 14.40	-1	242914..243996	-	360	116515143	ompA	BCc_210	-	OmpA
194	 20.43	0	244844..245548	+	234	116515144	flgF	BCc_211	-	FlgF
195	 12.50	-1	245817..246464	+	215	116515145	flgH	BCc_212	-	FlgH
196	 19.22	0	246530..247351	+	273	116515146	flgI	BCc_213	-	FlgI
197	 18.66	0	247506..248459	+	317	116515147	rluC	BCc_214	-	RluC
198	 25.81	0	248531..248716	+	61	116515148	rpmF	BCc_215	-	50S ribosomal protein L32
199	 16.93	0	248975..249913	+	312	116515149	fabD	BCc_216	-	hypothetical protein
200	 22.49	0	249910..250647	+	245	116515150	fabG	BCc_217	-	3-oxoacyl-(acyl-carrier protein) reductase
201	 13.99	-1	250714..250956	+	80	116515151	acpP	BCc_218	-	hypothetical protein
202	 16.26	-1	250965..251942	+	325	116515152	holB	BCc_219	-	DNA polymerase III, d' subunit
203	 16.60	-1	251985..252779	+	264	116515153	ycfH	BCc_220	-	YcfH
204	 22.37	0	253255..254640	-	461	116515154	asnC	BCc_221	-	asparaginyl-tRNA synthetase
205	 16.61	-1	254777..255739	-	320	116515155	yceA	BCc_222	-	YceA
206	 20.34	0	255791..258646	-	951	116515156	valS	BCc_223	-	hypothetical protein
207	 21.16	0	259090..260091	+	333	116515157	argF	BCc_224	-	hypothetical protein
208	 18.58	0	260143..260508	+	121	116515158	yhaR	BCc_225	-	YhaR
209	 25.48	0	260602..262332	-	576	116515159	deaD	BCc_226	-	ATP-dependent RNA helicase
210	 26.51	+1	262614..264695	-	693	116515160	pnp	BCc_227	-	polynucleotide phosphorylase/polyadenylase
211	 21.48	0	264891..265160	-	89	116515161	rpsO	BCc_228	-	30S ribosomal protein S15
212	 20.62	0	265222..266157	-	311	116515162	truB	BCc_229	-	hypothetical protein
213	 18.80	0	266206..266556	-	116	116515163	rbfA	BCc_230	-	hypothetical protein
214	 21.59	0	266634..268787	-	717	116515164	infB	BCc_231	-	hypothetical protein
215	 24.19	0	269027..270514	-	495	116515165	nusA	BCc_232	-	NusA
216	 18.88	0	271040..271288	-	82	116515166	secG	BCc_234	-	SecG
217	 26.62	+1	271722..273524	-	600	116515167	hflB	BCc_235	-	ATP-dependent protease
218	 20.32	0	273579..274208	-	209	116515168	ftsJ	BCc_236	-	hypothetical protein
219	 23.33	0	274479..274958	-	159	116515169	greA	BCc_237	-	hypothetical protein
220	 14.12	-1	275374..275628	+	84	116515170	yrbA	BCc_238	-	YrbA
221	 19.87	0	275965..276276	+	103	116515171	rplU	BCc_239	-	50S ribosomal protein L21
222	 25.16	0	276315..276620	+	101	116515172	rpmA	BCc_240	-	50S ribosomal protein L27
223	 21.24	0	276665..277681	+	338	116515173	yhbZ	BCc_241	-	Obg family GTP-binding protein
224	 28.37	+1	277779..278141	-	120	116515174	rpsI	BCc_242	-	30S ribosomal protein S9
225	 22.38	0	278174..278602	-	142	116515175	rplM	BCc_243	-	50S ribosomal protein L13
226	 15.84	-1	278769..279923	+	384	116515176	pheA	BCc_244	-	hypothetical protein
227	 18.34	0	280008..281354	+	448	116515177	ffh	BCc_245	-	hypothetical protein
228	 20.97	0	281409..281675	+	88	116515178	rpsP	BCc_246	-	30S ribosomal protein S16
229	 14.71	-1	281693..282202	+	169	116515179	rimM	BCc_247	-	16s rRNA processing protein
230	 19.94	0	282214..282900	+	228	116515180	trmD	BCc_248	-	hypothetical protein
231	 22.13	0	282971..283318	+	115	116515181	rplS	BCc_249	-	50S ribosomal protein L19
232	 22.88	0	284943..285401	+	152	116515182	aroQ	BCc_251	-	3-dehydroquinate dehydratase
233	 15.29	-1	285441..285767	-	108	116515183	fis	BCc_252	-	DNA-bending protein
234	 21.14	0	285849..286813	-	321	116515184	rluD	BCc_253	-	RluD
235	 16.33	-1	287031..289676	+	881	116515185	alaS	BCc_254	-	hypothetical protein
236	 26.67	+1	289786..289965	+	59	116515186	csrA	BCc_255	-	hypothetical protein
237	 20.96	0	290550..290840	-	96	116515187	zapA	BCc_258	-	ZapA
238	 23.29	0	290883..291539	-	218	116515188	rpiA	BCc_259	-	hypothetical protein
239	 19.94	0	292106..293755	+	549	116515189	glnS	BCc_263	-	glutaminyl-tRNA synthetase
240	 24.63	0	293837..295135	+	432	116515190	eno	BCc_264	-	hypothetical protein
241	 14.88	-1	295241..297901	+	886	116515191	polA	BCc_265	-	5'-3' exonuclease domain-containing protein
242	 16.75	-1	297906..298514	-	202	116515192	engB	BCc_266	-	EngB
243	 24.46	0	298730..300544	+	604	116515193	typA	BCc_267	-	GTP-binding elongation factor family protein
244	 15.28	-1	300651..301625	-	324	116515194	ygfZ	BCc_268	-	YgfZ
245	 18.93	0	301781..302879	+	365	116515195	prfB	BCc_269	-	hypothetical protein
246	 18.09	0	302882..304390	+	502	116515196	lysS	BCc_270	-	hypothetical protein
247	 21.90	0	304496..305746	+	416	116515197	lysA	BCc_271	-	diaminopimelate decarboxylase
248	 20.72	0	305849..307156	+	435	116515198	miaB	BCc_272	-	hypothetical protein
249	 17.62	0	307190..307660	+	156	116515199	ybeY	BCc_273	-	YbeY
250	 19.10	0	307714..310257	+	847	116515200	leuS	BCc_274	-	LeuS
251	 10.17	-2	310302..311294	+	330	116515201	holA	BCc_275	-	DNA polymerase III, d subunit
252	 15.19	-1	311350..311586	+	78	116515202	yhhP	BCc_276	-	YhhP
253	 23.57	0	311592..312707	-	371	116515203	asd	BCc_277	-	aspartate-semialdehyde dehydrogenase
254	 22.74	0	312981..314132	+	383	116515204	pgk	BCc_278	-	hypothetical protein
255	 21.36	0	314190..315266	+	358	116515205	fba	BCc_279	-	fructose-bisphosphate aldolase
256	 22.55	0	315463..316371	+	302	116515206	yggB	BCc_280	-	YggB
257	 12.18	-1	316461..319589	+	1042	116515207	recC	BCc_281	-	RecC
258	 13.96	-1	319605..323108	+	1167	116515208	recB	BCc_282	-	hypothetical protein
259	 15.38	-1	323110..324891	+	593	116515209	recD	BCc_283	-	hypothetical protein
260	 17.72	0	325171..325599	+	142	116515210	nusB	BCc_285	-	hypothetical protein
261	 15.85	-1	325934..326854	-	306	116515211	cyoE	BCc_287	-	CyoE
262	 10.49	-2	326827..327150	-	107	116515212	cyoD	BCc_288	-	CyoD
263	 17.09	0	327188..327772	-	194	116515213	cyoC	BCc_289	-	CyoC
264	 25.89	0	327820..329793	-	657	116515214	cyoB	BCc_290	-	CyoB
21.40	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.