IslandPath Analysis: Buchnera aphidicola str. Cc (Cinara cedri)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 21.40   STD DEV: 4.64
Buchnera aphidicola str. Cc (Cinara cedri), complete genome - 1..416380
357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
139	 20.17	0	176442..177710	-	422	116515089	proS	BCc_149	-	prolyl-tRNA synthetase
140	 16.31	-1	178132..179247	+	371	116515090	flhB	BCc_150	-	hypothetical protein
141	 19.38	0	179257..181356	+	699	116515091	flhA	BCc_151	-	FlhA
142	 17.77	0	181368..183083	-	571	116515092	argS	BCc_152	-	hypothetical protein
143	 17.67	0	185343..186038	+	231	116515093	dnaQ	BCc_156	-	DNA polymerase III, e subunit
144	 14.89	-1	186323..186913	+	196	116515094	grpE1	BCc_158	-	GrpE1
145	 19.36	0	186979..187448	+	156	116515095	smpB	BCc_159	-	SsrA-binding protein
146	 20.78	0	187494..187955	+	153	116515096	tadA	BCc_160	-	hypothetical protein
147	 16.80	0	187971..188351	-	126	116515097	acpS	BCc_161	-	hypothetical protein
148	 15.44	-1	188326..189219	-	297	116515098	era	BCc_162	-	hypothetical protein
149	 26.73	+1	189225..189905	-	226	116515099	rnc	BCc_163	-	hypothetical protein
150	 13.99	-1	189989..190846	-	285	116515100	lepB	BCc_164	-	hypothetical protein
151	 22.56	0	190867..192657	-	596	116515101	lepA	BCc_165	-	GTP-binding protein LepA
152	 18.81	0	192964..194085	+	373	116515102	trmU	BCc_166	-	hypothetical protein
153	 20.78	0	194317..195081	+	254	116515103	fabI	BCc_167	-	FabI
154	 20.18	0	195292..197238	+	648	116515104	rnb	BCc_168	-	exoribonuclease II
155	 19.21	0	197331..197939	+	202	116515105	lipB	BCc_169	-	hypothetical protein
156	 23.15	0	198016..198948	+	310	116515106	lipA	BCc_170	-	lipoyl synthase
157	 18.70	0	199051..200916	-	621	116515107	sppA	BCc_171	-	hypothetical protein
158	 23.31	0	201093..201521	-	142	116515108	yciA	BCc_172	-	YciA
159	  8.63	-2	201623..202375	-	250	116515109	yciC	BCc_173	-	YciC
160	 18.74	0	202788..203518	+	243	116515110	yciL	BCc_174	-	YciL
161	 18.00	0	203605..204426	-	273	116515111	suhB	BCc_175	-	hypothetical protein
162	 18.98	0	204572..205651	+	359	116515112	yfgB	BCc_176	-	YfgB
163	 19.25	0	205733..207010	+	425	116515113	hisS	BCc_177	-	hypothetical protein
164	 24.72	0	207123..208376	+	417	116515114	glyA	BCc_178	-	hypothetical protein
165	 16.51	-1	208553..209539	-	328	116515115	pgl	BCc_179	-	6-phosphogluconolactonase
166	 18.52	0	209599..211650	-	683	116515116	mfd	BCc_180	-	hypothetical protein
167	 26.63	+1	212086..213084	+	332	116515117	gapA	BCc_181	-	hypothetical protein
168	 19.26	0	213225..213764	-	179	116515118	fldA	BCc_182	-	hypothetical protein
169	 19.89	0	214091..214648	+	185	116515119	ybgI	BCc_183	-	YbgI
170	 19.06	0	214894..217695	+	933	116515120	sucA	BCc_184	-	2-oxoglutarate dehydrogenase E1 component
171	 20.13	0	217701..218897	+	398	116515121	sucB	BCc_185	-	2-oxoglutarate dehydrogenase E2 component
172	 22.51	0	219187..219879	+	230	116515122	gpmA	BCc_186	-	hypothetical protein
173	 24.61	0	220001..220963	+	320	116515123	pfkA	BCc_187	-	6-phosphofructokinase
174	 22.61	0	221127..221891	-	254	116515124	tpiA	BCc_188	-	hypothetical protein
175	 22.11	0	222000..222293	-	97	116515125	himD	BCc_189	-	HimD
176	 24.78	0	222342..224012	-	556	116515126	rpsA	BCc_190	-	30S ribosomal protein S1
177	 22.86	0	224252..225559	-	435	116515127	aroA	BCc_191	-	3-phosphoshikimate 1-carboxyvinyltransferase
178	 22.50	0	225626..226714	-	362	116515128	serC	BCc_192	-	phosphoserine aminotransferase
179	 20.97	0	226809..228110	-	433	116515129	serS	BCc_193	-	hypothetical protein
180	 22.63	0	228397..229386	+	329	116515130	trxB	BCc_194	-	hypothetical protein
181	 25.46	0	229401..229616	+	71	116515131	infA	BCc_195	-	hypothetical protein
182	 18.82	0	229678..231393	+	571	116515132	aspS	BCc_196	-	AspS
183	 15.09	-1	231498..232226	+	242	116515133	yebC	BCc_197	-	YebC
184	 24.24	0	232481..233920	-	479	116515134	pykA	BCc_198	-	PykA
185	 17.11	0	234325..235785	+	486	116515135	zwf	BCc_199	-	hypothetical protein
186	 19.64	0	235925..236815	+	296	116515136	htpX	BCc_200	-	hypothetical protein
187	 13.77	-1	237138..238727	+	529	116515137	yoaE	BCc_201	-	YoaE
188	 19.26	0	238727..239401	+	224	116515138	yeaZ	BCc_202	-	YeaZ
189	 16.87	0	239432..239680	-	82	116515139	minE	BCc_203	-	hypothetical protein
190	 26.57	+1	239686..240498	-	270	116515140	minD	BCc_204	-	hypothetical protein
191	 19.36	0	240534..241256	-	240	116515141	minC	BCc_205	-	hypothetical protein
192	 15.99	-1	241436..242467	+	343	116515142	rsmC	BCc_206	-	16S RNA m2G1207 methylase
193	 14.40	-1	242914..243996	-	360	116515143	ompA	BCc_210	-	OmpA
194	 20.43	0	244844..245548	+	234	116515144	flgF	BCc_211	-	FlgF
195	 12.50	-1	245817..246464	+	215	116515145	flgH	BCc_212	-	FlgH
196	 19.22	0	246530..247351	+	273	116515146	flgI	BCc_213	-	FlgI
197	 18.66	0	247506..248459	+	317	116515147	rluC	BCc_214	-	RluC
198	 25.81	0	248531..248716	+	61	116515148	rpmF	BCc_215	-	50S ribosomal protein L32
199	 16.93	0	248975..249913	+	312	116515149	fabD	BCc_216	-	hypothetical protein
200	 22.49	0	249910..250647	+	245	116515150	fabG	BCc_217	-	3-oxoacyl-(acyl-carrier protein) reductase
201	 13.99	-1	250714..250956	+	80	116515151	acpP	BCc_218	-	hypothetical protein
202	 16.26	-1	250965..251942	+	325	116515152	holB	BCc_219	-	DNA polymerase III, d' subunit
203	 16.60	-1	251985..252779	+	264	116515153	ycfH	BCc_220	-	YcfH
204	 22.37	0	253255..254640	-	461	116515154	asnC	BCc_221	-	asparaginyl-tRNA synthetase
205	 16.61	-1	254777..255739	-	320	116515155	yceA	BCc_222	-	YceA
206	 20.34	0	255791..258646	-	951	116515156	valS	BCc_223	-	hypothetical protein
207	 21.16	0	259090..260091	+	333	116515157	argF	BCc_224	-	hypothetical protein
208	 18.58	0	260143..260508	+	121	116515158	yhaR	BCc_225	-	YhaR
209	 25.48	0	260602..262332	-	576	116515159	deaD	BCc_226	-	ATP-dependent RNA helicase
210	 26.51	+1	262614..264695	-	693	116515160	pnp	BCc_227	-	polynucleotide phosphorylase/polyadenylase
211	 21.48	0	264891..265160	-	89	116515161	rpsO	BCc_228	-	30S ribosomal protein S15
212	 20.62	0	265222..266157	-	311	116515162	truB	BCc_229	-	hypothetical protein
213	 18.80	0	266206..266556	-	116	116515163	rbfA	BCc_230	-	hypothetical protein
214	 21.59	0	266634..268787	-	717	116515164	infB	BCc_231	-	hypothetical protein
215	 24.19	0	269027..270514	-	495	116515165	nusA	BCc_232	-	NusA
216	 18.88	0	271040..271288	-	82	116515166	secG	BCc_234	-	SecG
217	 26.62	+1	271722..273524	-	600	116515167	hflB	BCc_235	-	ATP-dependent protease
218	 20.32	0	273579..274208	-	209	116515168	ftsJ	BCc_236	-	hypothetical protein
219	 23.33	0	274479..274958	-	159	116515169	greA	BCc_237	-	hypothetical protein
220	 14.12	-1	275374..275628	+	84	116515170	yrbA	BCc_238	-	YrbA
221	 19.87	0	275965..276276	+	103	116515171	rplU	BCc_239	-	50S ribosomal protein L21
222	 25.16	0	276315..276620	+	101	116515172	rpmA	BCc_240	-	50S ribosomal protein L27
223	 21.24	0	276665..277681	+	338	116515173	yhbZ	BCc_241	-	Obg family GTP-binding protein
224	 28.37	+1	277779..278141	-	120	116515174	rpsI	BCc_242	-	30S ribosomal protein S9
225	 22.38	0	278174..278602	-	142	116515175	rplM	BCc_243	-	50S ribosomal protein L13
226	 15.84	-1	278769..279923	+	384	116515176	pheA	BCc_244	-	hypothetical protein
227	 18.34	0	280008..281354	+	448	116515177	ffh	BCc_245	-	hypothetical protein
228	 20.97	0	281409..281675	+	88	116515178	rpsP	BCc_246	-	30S ribosomal protein S16
229	 14.71	-1	281693..282202	+	169	116515179	rimM	BCc_247	-	16s rRNA processing protein
230	 19.94	0	282214..282900	+	228	116515180	trmD	BCc_248	-	hypothetical protein
231	 22.13	0	282971..283318	+	115	116515181	rplS	BCc_249	-	50S ribosomal protein L19
232	 22.88	0	284943..285401	+	152	116515182	aroQ	BCc_251	-	3-dehydroquinate dehydratase
233	 15.29	-1	285441..285767	-	108	116515183	fis	BCc_252	-	DNA-bending protein
234	 21.14	0	285849..286813	-	321	116515184	rluD	BCc_253	-	RluD
235	 16.33	-1	287031..289676	+	881	116515185	alaS	BCc_254	-	hypothetical protein
236	 26.67	+1	289786..289965	+	59	116515186	csrA	BCc_255	-	hypothetical protein
237	 20.96	0	290550..290840	-	96	116515187	zapA	BCc_258	-	ZapA
238	 23.29	0	290883..291539	-	218	116515188	rpiA	BCc_259	-	hypothetical protein
21.40	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.