IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.01   STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
40	 50.16	-1	45952..46260	+	102	163842317	-	BSUIS_A0044	-	hypothetical protein
41	 56.02	0	46435..47448	+	337	163842318	cyoA	BSUIS_A0045	-	ubiquinol oxidase, subunit II
42	 57.93	0	47528..49507	+	659	163842319	cyoB	BSUIS_A0046	-	cytochrome o ubiquinol oxidase, subunit I
43	 58.10	0	49511..50140	+	209	163842320	cyoC	BSUIS_A0047	-	cytochrome o ubiquinol oxidase, subunit III
44	 55.46	0	50140..50505	+	121	163842321	cyoD	BSUIS_A0048	-	cytochrome o ubiquinol oxidase subunit IV
45	 50.54	-1	50502..50780	-	92	163842322	-	BSUIS_A0049	-	hypothetical protein
46	 64.63	+1	50956..51543	+	195	163842323	-	BSUIS_A0050	-	SH3 type 3 domain-containing protein
47	 59.22	0	52139..54058	+	639	163842324	-	BSUIS_A0051	-	surface antigen (D15)
48	 59.87	0	54055..58794	+	1579	163842325	-	BSUIS_A0052	-	hypothetical protein
49	 57.58	0	58939..59664	+	241	163842326	-	BSUIS_A0053	-	ErfK/YbiS/YcfS/YnhG family protein
50	 55.56	0	59715..59930	-	71	163842327	-	BSUIS_A0054	-	hypothetical protein
51	 58.63	0	60000..60509	-	169	163842328	-	BSUIS_A0055	-	hypothetical protein
52	 61.19	0	60840..61040	-	66	163842329	-	BSUIS_A0056	-	hypothetical protein
53	 58.61	0	61051..62055	-	334	163842330	-	BSUIS_A0057	-	hypothetical protein
54	 59.40	0	62190..62588	-	132	163842331	-	BSUIS_A0058	-	hypothetical protein
55	 58.59	0	62865..63260	-	131	163842332	-	BSUIS_A0059	-	glyoxalase/bleomycin resistance protein/dioxygenase
56	 62.11	+1	63457..64620	+	387	163842333	-	BSUIS_A0060	-	nucleotide-binding protein-like protein
57	 57.90	0	64865..66496	-	543	163842334	pgm	BSUIS_A0061	-	phosphoglucomutase
58	 44.62	-2	66552..66737	-	61	163842335	-	BSUIS_A0062	-	hypothetical protein
59	 59.73	0	66712..67605	-	297	163842336	-	BSUIS_A0063	-	LysR family transcriptional regulator
60	 54.65	0	67730..68653	+	307	163842337	-	BSUIS_A0064	-	hypothetical protein
61	 58.94	0	68726..69424	+	232	163842338	-	BSUIS_A0065	-	putative fructose transport system kinase
62	 58.99	0	69524..70213	+	229	163842339	-	BSUIS_A0066	-	fumarylacetoacetate hydrolase domain-containing protein
63	 52.60	-1	70233..70424	+	63	163842340	-	BSUIS_A0067	-	hypothetical protein
64	 46.30	-2	70486..70701	+	71	163842341	-	BSUIS_A0068	-	hypothetical protein
65	 51.85	-1	70867..71055	+	62	163842342	-	BSUIS_A0069	-	hypothetical protein
66	 62.38	+1	71070..71933	+	287	163842343	-	BSUIS_A0070	-	lytic transglycosylase catalytic
67	 57.84	0	72119..72775	+	218	163842344	-	BSUIS_A0071	-	hemolysin-3
68	 64.71	+1	76052..77638	-	528	163842345	-	BSUIS_A0073	-	hypothetical protein
69	 64.00	+1	77529..78392	-	287	163842346	-	BSUIS_A0074	-	hypothetical protein
70	 52.97	0	78911..81472	+	853	163842347	-	BSUIS_A0075	-	hypothetical protein
71	 53.52	0	81492..82229	+	245	163842348	-	BSUIS_A0076	-	invasion associated locus B family protein
72	 58.23	0	82308..83528	-	406	163842349	argG	BSUIS_A0077	-	argininosuccinate synthase
73	 57.54	0	84378..84881	-	167	163842350	-	BSUIS_A0079	-	hypothetical protein
74	 59.14	0	84915..86150	-	411	163842351	-	BSUIS_A0080	-	radical SAM protein
75	 50.52	-1	86094..86285	+	63	163842352	-	BSUIS_A0081	-	hypothetical protein
76	 55.38	0	86270..86464	+	64	163842353	-	BSUIS_A0082	-	hypothetical protein
77	 57.54	0	86410..86913	-	167	163842354	-	BSUIS_A0083	-	hypothetical protein
78	 61.58	+1	87238..87768	-	176	163842355	-	BSUIS_A0084	-	hypothetical protein
79	 54.76	0	87856..88149	-	97	163842356	-	BSUIS_A0085	-	pterin-4-alpha-carbinolamine dehydratase
80	 55.61	0	88376..88981	+	201	163842357	-	BSUIS_A0086	-	protein tyrosine phosphatase
81	 61.25	0	88891..89481	-	196	163842358	-	BSUIS_A0087	-	2'-5' RNA ligase
82	 55.92	0	89662..90387	-	241	163842359	-	BSUIS_A0088	-	arylesterase precursor
83	 61.73	+1	90534..91262	+	242	163842360	-	BSUIS_A0089	-	ABC transporter related
84	 61.65	+1	91259..93808	+	849	163842361	-	BSUIS_A0090	-	hypothetical protein
85	 57.99	0	94044..94781	+	245	163842362	-	BSUIS_A0092	-	hypothetical protein
86	 59.44	0	94896..95435	+	179	163842363	pat	BSUIS_A0093	-	phosphinothricin N-acetyltransferase
87	 54.73	0	95455..95856	-	133	163842364	-	BSUIS_A0094	-	hypothetical protein
88	 57.01	0	96406..97140	-	244	163842365	-	BSUIS_A0095	-	hypothetical protein
89	 56.74	0	97293..97433	-	46	163842366	-	BSUIS_A0096	-	hypothetical protein
90	 60.27	0	97417..100104	-	895	163842367	acnA	BSUIS_A0097	-	aconitate hydratase
91	 58.33	0	100448..101095	+	215	163842368	ccmA	BSUIS_A0098	-	cytochrome c biogenesis protein CcmA
92	 62.01	+1	101095..101760	+	221	163842369	ccmB	BSUIS_A0099	-	heme exporter protein CcmB
93	 58.52	0	101818..102603	+	261	163842370	ccmC	BSUIS_A0100	-	heme exporter protein CcmC
94	 56.90	0	102600..102773	+	57	163842371	-	BSUIS_A0101	-	Heme exporter protein D (CcmD)
95	 59.31	0	102770..103381	+	203	163842372	dsbE	BSUIS_A0102	-	DsbE subfamily periplasmic protein thiol:disulfide oxidoreductase
96	 61.00	0	103630..105465	-	611	163842373	ilvD	BSUIS_A0103	-	dihydroxy-acid dehydratase
97	 54.35	0	105647..105784	+	45	163842374	-	BSUIS_A0104	-	hypothetical protein
98	 61.57	+1	105865..106296	-	143	163842375	-	BSUIS_A0105	-	hypothetical protein
99	 59.79	0	106323..106700	-	125	163842376	-	BSUIS_A0106	-	response regulator receiver protein
100	 49.37	-1	106875..107111	-	78	163842377	-	BSUIS_A0107	-	AsnC family transcriptional regulator
101	 57.04	0	107764..108168	+	134	163842378	-	BSUIS_A0108	-	hypothetical protein
102	 57.02	0	108254..108958	-	234	163842379	-	BSUIS_A0109	-	hypothetical protein
103	 53.97	0	109031..109849	+	272	163842380	-	BSUIS_A0110	-	hypothetical protein
104	 57.63	0	110127..111155	+	342	163842381	-	BSUIS_A0111	-	sulfate ABC transporter, sulfate-binding protein
105	 59.25	0	111199..112128	-	309	163842382	-	BSUIS_A0112	-	hypothetical protein
106	 59.40	0	111250..112116	+	288	163842383	cysT	BSUIS_A0113	-	sulfate ABC transporter, permease protein CysT
107	 58.94	0	112106..112972	+	288	163842384	cysW	BSUIS_A0114	-	sulfate ABC transporter, permease protein CysW
108	 61.39	+1	113070..114149	+	359	163842385	cysA	BSUIS_A0115	-	sulfate ABC transporter, ATP-binding protein
109	 60.52	0	114535..123138	+	2867	163842386	-	BSUIS_A0116	-	glycosyltransferase 36
110	 58.31	0	123228..124532	+	434	163842387	pncB	BSUIS_A0117	-	nicotinate phosphoribosyltransferase
111	 60.65	0	124574..125404	-	276	163842388	-	BSUIS_A0118	-	PhzF family phenazine biosynthesis protein
112	 55.77	0	125514..126302	-	262	163842389	-	BSUIS_A0119	-	methyltransferase type 11
113	 59.55	0	126325..127251	-	308	163842390	frk	BSUIS_A0120	-	fructokinase
114	 59.60	0	127342..128148	-	268	163842391	-	BSUIS_A0121	-	short-chain dehydrogenase/reductase SDR
115	 60.03	0	128269..130560	-	763	163842392	-	BSUIS_A0122	-	1A family penicillin-binding protein
116	 56.13	0	130765..131457	-	230	163842393	ropB	BSUIS_A0123	-	22 kDa outer membrane protein precursor
117	 56.19	0	131725..132411	-	228	163842394	ropB	BSUIS_A0124	-	22 kDa outer membrane protein precursor
118	 56.47	0	132643..133260	-	205	163842395	-	BSUIS_A0125	-	hypothetical protein
119	 59.53	0	133299..134714	-	471	163842396	-	BSUIS_A0126	-	hypothetical protein
120	 52.61	-1	134945..135193	+	82	163842397	-	BSUIS_A0127	-	hypothetical protein
121	 59.45	0	135275..138211	+	978	163842398	polA	BSUIS_A0128	-	DNA polymerase I
122	 60.07	0	138353..140233	+	626	163842399	ydbR	BSUIS_A0129	-	DEAD-box ATP-dependent RNA helicase ydbR
123	 59.79	0	140329..142770	-	813	163842400	gyrB	BSUIS_A0130	-	DNA gyrase subunit B
124	 50.00	-1	142821..142988	-	55	163842401	-	BSUIS_A0131	-	hypothetical protein
125	 64.54	+1	143410..145431	+	673	163842402	hrpB	BSUIS_A0132	-	ATP-dependent helicase HrpB
126	 60.94	0	145526..146818	+	430	163842403	regB	BSUIS_A0133	-	sensor histidine kinase regB
127	 58.54	0	146888..147256	+	122	163842404	-	BSUIS_A0134	-	transposase for insertion sequence element IS6501
128	 58.01	0	146910..147221	+	103	163842405	-	BSUIS_A0135	-	IS711, transposase orfA
129	 50.13	-1	147253..147645	+	130	163842406	-	BSUIS_A0136	-	transposase for insertion sequence element IS6501
130	 51.03	-1	147711..148049	+	112	163842407	-	BSUIS_A0137	-	hypothetical protein
131	 60.46	0	148245..148808	+	187	163842408	regA	BSUIS_A0138	-	photosynthetic apparatus regulatory protein regA
132	 63.70	+1	148814..149116	-	100	163842409	-	BSUIS_A0139	-	hypothetical protein
133	 57.33	0	149578..150198	+	206	163842410	-	BSUIS_A0140	-	ErfK/YbiS/YcfS/YnhG family protein
134	 59.69	0	150288..150860	-	190	163842411	-	BSUIS_A0141	-	HIRA-interacting protein 5
135	 60.93	0	150969..151508	-	179	163842412	-	BSUIS_A0142	-	UspA domain-containing protein
136	 59.41	0	151515..152672	-	385	163842413	trpS	BSUIS_A0143	-	tryptophanyl-tRNA synthetase
137	 59.87	0	152679..154268	-	529	163842414	mviN	BSUIS_A0144	-	integral membrane protein MviN
138	 58.54	0	154282..157086	-	934	163842415	glnD	BSUIS_A0145	-	PII uridylyl-transferase
139	 45.83	-2	157152..157247	+	31	163842416	-	BSUIS_A0146	-	hypothetical protein
57.01	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.