IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
805	 55.27	0	806354..807397	+	347	163843082	nuoH	BSUIS_A0848	-	NADH dehydrogenase subunit H
806	 58.13	0	807410..807901	+	163	163843083	-	BSUIS_A0849	-	NADH dehydrogenase subunit I
807	 57.77	0	808075..808692	+	205	163843084	nuoJ	BSUIS_A0850	-	NADH dehydrogenase subunit J
808	 51.78	-1	808703..809011	+	102	163843085	nuoK	BSUIS_A0851	-	NADH dehydrogenase subunit K
809	 56.95	0	809019..811004	+	661	163843086	-	BSUIS_A0852	-	NADH dehydrogenase subunit L
810	 57.65	0	811004..812512	+	502	163843087	-	BSUIS_A0853	-	NADH dehydrogenase subunit M
811	 57.06	0	812534..813970	+	478	163843088	-	BSUIS_A0854	-	NADH dehydrogenase subunit N
812	 58.52	0	813996..814793	+	265	163843089	-	BSUIS_A0855	-	biotin--acetyl-CoA-carboxylase ligase
813	 59.69	0	814987..816663	+	558	163843090	-	BSUIS_A0856	-	hypothetical protein
814	 57.28	0	816703..817107	+	134	163843091	-	BSUIS_A0857	-	methylmalonyl-CoA epimerase
815	 53.70	0	817110..817379	+	89	163843092	-	BSUIS_A0858	-	hypothetical protein
816	 53.90	0	817737..817877	+	46	163843093	-	BSUIS_A0859	-	hypothetical protein
817	 38.71	-2	817908..818000	+	30	163843094	-	BSUIS_A0860	-	hypothetical protein
818	 57.19	0	818227..819555	+	442	163843095	proS	BSUIS_A0861	-	prolyl-tRNA synthetase
819	 57.29	0	819597..820865	+	422	163843096	-	BSUIS_A0862	-	LolC/E family lipoprotein releasing system, transmembrane protein
820	 61.26	0	820865..821548	+	227	163843097	lolD	BSUIS_A0863	-	lipoprotein-releasing system ATP-binding protein lolD
821	 57.99	0	822207..825698	+	1163	163843098	dnaE	BSUIS_A0864	-	DNA polymerase III subunit alpha
822	 55.56	0	825739..825936	+	65	163843099	-	BSUIS_A0865	-	hypothetical protein
823	 51.69	-1	825981..826394	-	137	163843100	-	BSUIS_A0866	-	hypothetical protein
824	 52.98	0	826666..827688	-	340	163843101	-	BSUIS_A0867	-	extensin family protein
825	 57.44	0	827972..828589	+	205	163843102	rpsD	BSUIS_A0868	-	30S ribosomal protein S4
826	 45.37	-2	829044..829151	-	35	163843103	-	BSUIS_A0869	-	hypothetical protein
827	 55.10	0	829098..829979	+	293	163843104	-	BSUIS_A0870	-	PP-loop domain-containing protein
828	 57.85	0	829966..830793	+	275	163843105	-	BSUIS_A0871	-	hypothetical protein
829	 58.06	0	831008..832273	-	421	163843106	-	BSUIS_A0872	-	Bcr/CflA subfamily drug resistance transporter
830	 55.91	0	832272..832457	+	61	163843107	-	BSUIS_A0873	-	hypothetical protein
831	 50.45	-1	832544..832876	-	110	163843108	-	BSUIS_A0874	-	glutaredoxin-like protein
832	 58.55	0	833061..833294	-	77	163843109	-	BSUIS_A0875	-	hypothetical protein
833	 59.15	0	833564..835786	-	740	163843110	purL	BSUIS_A0876	-	phosphoribosylformylglycinamidine synthase II
834	 62.44	+1	835973..836374	-	133	163843111	-	BSUIS_A0877	-	hypothetical protein
835	 57.41	0	836434..837081	-	215	163843112	-	BSUIS_A0878	-	glutathione S-transferase domain-containing protein
836	 60.57	0	837333..838004	-	223	163843113	purQ	BSUIS_A0879	-	phosphoribosylformylglycinamidine synthase subunit I
837	 58.85	0	838027..838269	-	80	163843114	purS	BSUIS_A0880	-	phosphoribosylformylglycinamidine synthase subunit PurS
838	 55.95	0	838385..839149	-	254	163843115	purC	BSUIS_A0881	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
839	 56.17	0	839405..839728	+	107	163843116	-	BSUIS_A0882	-	hypothetical protein
840	 58.73	0	840610..841176	-	188	163843117	-	BSUIS_A0884	-	hypothetical protein
841	 53.92	0	841375..841476	-	33	163843118	-	BSUIS_A0885	-	hypothetical protein
842	 61.53	+1	841445..842320	+	291	163843119	-	BSUIS_A0886	-	biphenyl-2,3-diol 1,2-dioxygenase 3
843	 59.60	0	842541..843842	-	433	163843120	purB	BSUIS_A0887	-	adenylosuccinate lyase
844	 60.18	0	843869..844546	-	225	163843121	rpe	BSUIS_A0888	-	ribulose-phosphate 3-epimerase
845	 57.39	0	844704..845630	-	308	163843122	-	BSUIS_A0889	-	lipid A biosynthesis lauroyl acyltransferase
846	 61.42	+1	845644..846672	-	342	163843123	-	BSUIS_A0890	-	hypothetical protein
847	 60.64	0	846754..848031	-	425	163843124	tcmK	BSUIS_A0891	-	3-oxoacyl-(acyl carrier protein) synthase II
848	 60.91	0	848033..849214	-	393	163843125	-	BSUIS_A0892	-	3-oxoacyl-(acyl carrier protein) synthase II
849	 51.42	-1	849362..849643	-	93	163843126	acpXL	BSUIS_A0893	-	acyl carrier protein
850	 59.97	0	849844..850605	-	253	163843127	-	BSUIS_A0894	-	hypothetical protein
851	 56.79	0	850821..851843	+	340	163843128	-	BSUIS_A0895	-	aldose 1-epimerase
852	 60.02	0	851840..852757	-	305	163843129	kdgK	BSUIS_A0896	-	2-dehydro-3-deoxygluconokinase
853	 58.06	0	852958..853689	+	243	163843130	-	BSUIS_A0897	-	hypothetical protein
854	 59.21	0	853693..854832	+	379	163843131	phnM	BSUIS_A0898	-	phosphonate metabolism protein PhnM
855	 58.48	0	854829..855512	-	227	163843132	-	BSUIS_A0899	-	HAD family hydrolase
856	 54.76	0	855675..856556	+	293	163843133	-	BSUIS_A0900	-	extracellular solute-binding protein
857	 59.43	0	856748..857770	+	340	163843134	-	BSUIS_A0901	-	tRNA-dihydrouridine synthase A
858	 57.59	0	857767..858471	-	234	163843135	-	BSUIS_A0902	-	hypothetical protein
859	 54.67	0	858471..858620	-	49	163843136	-	BSUIS_A0903	-	hypothetical protein
860	 62.20	+1	858685..859467	-	260	163843137	cobV	BSUIS_A0904	-	cobalamin synthase
861	 62.25	+1	859621..860640	+	339	163843138	cobU	BSUIS_A0905	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
862	 54.58	0	860749..861228	-	159	163843139	-	BSUIS_A0906	-	hypothetical protein
863	 59.81	0	861357..861998	-	213	163843140	-	BSUIS_A0907	-	hypothetical protein
864	 57.37	0	862095..862664	-	189	163843141	-	BSUIS_A0908	-	nuclease
865	 47.31	-2	862635..862913	+	92	163843142	-	BSUIS_A0909	-	hypothetical protein
866	 57.09	0	863285..864088	+	267	163843143	exoR	BSUIS_A0910	-	exopolysaccharide production negative regulator precursor
867	 54.66	0	864147..864929	-	260	163843144	-	BSUIS_A0911	-	exodeoxyribonuclease III (xth)
868	 57.63	0	865098..865805	+	235	163843145	-	BSUIS_A0912	-	hypothetical protein
869	 54.43	0	865886..866212	-	108	163843146	-	BSUIS_A0913	-	iron-sulfur cluster assembly accessory protein
870	 58.64	0	866379..867587	+	402	163843147	dgt	BSUIS_A0914	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
871	 56.83	0	867809..869566	+	585	163843148	argS	BSUIS_A0915	-	arginyl-tRNA synthetase
872	 59.26	0	869778..872732	+	984	163843149	-	BSUIS_A0916	-	Oleosin B6
873	 59.31	0	872933..873952	+	339	163843150	nagZ	BSUIS_A0917	-	Beta-hexosaminidase
874	 60.80	0	874025..874876	+	283	163843151	scpA	BSUIS_A0918	-	segregation and condensation protein A
875	 60.74	0	874869..875594	+	241	163843152	scpB	BSUIS_A0919	-	segregation and condensation protein B
876	 56.16	0	875740..875958	+	72	163843153	tatA	BSUIS_A0920	-	twin argininte translocase protein A
877	 56.21	0	876039..876650	+	203	163843154	tatB	BSUIS_A0921	-	sec-independent translocase
878	 57.33	0	876647..877471	+	274	163843155	tatC	BSUIS_A0922	-	Sec-independent protein translocase TatC
879	 59.27	0	877548..878831	+	427	163843156	serS	BSUIS_A0923	-	seryl-tRNA synthetase
880	 60.81	0	878980..879747	+	255	163843157	surE	BSUIS_A0924	-	stationary phase survival protein SurE
881	 58.59	0	879744..880412	+	222	163843158	pcm	BSUIS_A0925	-	protein-L-isoaspartate O-methyltransferase
882	 60.51	0	880792..882090	+	432	163843159	lppB	BSUIS_A0926	-	Outer membrane antigenic lipoprotein B precursor
883	 54.90	0	882139..883005	-	288	163843160	-	BSUIS_A0927	-	hypothetical protein
884	 54.39	0	883165..883506	+	113	163843161	yajC	BSUIS_A0928	-	preprotein translocase, YajC subunit
885	 48.48	-1	883546..883677	-	43	163843162	-	BSUIS_A0929	-	hypothetical protein
886	 56.62	0	883625..885952	+	775	163843163	secD	BSUIS_A0930	-	bifunctional preprotein translocase subunit SecD/SecF
887	 60.51	0	885955..886344	+	129	163843164	-	BSUIS_A0931	-	hypothetical protein
888	 58.15	0	886350..887183	+	277	163843165	crtB	BSUIS_A0932	-	phytoene synthase
889	 59.81	0	887235..888635	-	466	163843166	gid	BSUIS_A0933	-	tRNA (uracil-5-)-methyltransferase Gid
890	 60.54	0	888895..889041	-	48	163843167	-	BSUIS_A0934	-	hypothetical protein
891	 56.46	0	889315..890451	+	378	163843168	-	BSUIS_A0935	-	hypothetical protein
892	 55.96	0	890448..891017	+	189	163843169	-	BSUIS_A0936	-	hypothetical protein
893	 55.85	0	891397..892764	+	455	163843170	tig	BSUIS_A0938	-	trigger factor
894	 57.06	0	892812..894320	+	502	163843171	gatB	BSUIS_A0939	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
895	 53.57	0	894320..894823	+	167	163843172	-	BSUIS_A0940	-	GCN5-related N-acetyltransferase
896	 59.12	0	894983..895393	+	136	163843173	-	BSUIS_A0941	-	NADH dehydrogenase
897	 46.83	-2	895453..895578	+	41	163843174	-	BSUIS_A0942	-	hypothetical protein
898	 57.96	0	895587..896057	+	156	163843175	-	BSUIS_A0943	-	hypothetical protein
899	 57.62	0	896722..898080	-	452	163843176	accC	BSUIS_A0945	-	acetyl-CoA carboxylase biotin carboxylase subunit
900	 61.15	0	898130..898600	-	156	163843177	accB	BSUIS_A0946	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
901	 54.85	0	898602..899075	-	157	163843178	aroQ	BSUIS_A0947	-	3-dehydroquinate dehydratase
902	 40.83	-2	899142..899261	+	39	163843179	-	BSUIS_A0948	-	hypothetical protein
903	 58.55	0	900163..901578	-	471	163843180	-	BSUIS_A0951	-	peptidase M48 Ste24p
904	 59.36	0	901770..902933	+	387	163843181	-	BSUIS_A0952	-	aminotransferase class I and II
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.