IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
774	 58.01	0	782412..782954	+	180	163843051	-	BSUIS_A0814	-	HTH-type transcriptional regulator in himA 3' region
775	 52.52	-1	783004..783321	-	105	163843052	sugE	BSUIS_A0815	-	quaternary ammonium compound-resistance protein sugE
776	 55.56	0	783668..785206	-	512	163843053	-	BSUIS_A0817	-	CPS biosynthesis glycosyltransferase
777	 56.02	0	785336..785551	-	71	163843054	-	BSUIS_A0818	-	glycosyl transferase group 1
778	 53.57	0	785560..786147	-	195	163843055	-	BSUIS_A0819	-	polysaccharide export protein
779	 54.90	0	786271..786933	+	220	163843056	-	BSUIS_A0820	-	exopolysaccharide transport protein family
780	 53.88	0	787001..787219	-	72	163843057	-	BSUIS_A0821	-	hypothetical protein
781	 57.72	0	787360..787728	+	122	163843058	-	BSUIS_A0822	-	transposase for insertion sequence element IS6501
782	 49.29	-1	787836..788117	+	93	163843059	-	BSUIS_A0823	-	transposase for insertion sequence element IS6501
783	 58.59	0	788415..789491	+	358	163843060	-	BSUIS_A0824	-	cytochrome oxidase assembly
784	 59.16	0	789644..790576	-	310	163843061	argC	BSUIS_A0825	-	N-acetyl-gamma-glutamyl-phosphate reductase
785	 59.41	0	790666..791616	-	316	163843062	speB	BSUIS_A0826	-	agmatinase
786	 61.22	0	791707..792183	-	158	163843063	rpsI	BSUIS_A0827	-	30S ribosomal protein S9
787	 57.42	0	792186..792650	-	154	163843064	rplM	BSUIS_A0828	-	50S ribosomal protein L13
788	 58.61	0	792886..793332	-	148	163843065	-	BSUIS_A0829	-	hypothetical protein
789	 57.24	0	793566..794849	+	427	163843066	-	BSUIS_A0830	-	O-acetylhomoserine aminocarboxypropyltransferase
790	 59.76	0	794921..795340	-	139	163843067	-	BSUIS_A0831	-	hypothetical protein
791	 49.44	-1	795390..795569	-	59	163843068	-	BSUIS_A0832	-	hypothetical protein
792	 46.08	-2	795903..796412	+	169	163843069	-	BSUIS_A0833	-	hypothetical protein
793	 47.98	-2	796409..796804	+	131	163843070	-	BSUIS_A0834	-	hypothetical protein
794	 51.49	-1	796858..797193	+	111	163843071	-	BSUIS_A0835	-	hypothetical protein
795	 48.76	-1	797250..797651	-	133	163843072	-	BSUIS_A0836	-	hypothetical protein
796	 44.26	-2	797948..798130	+	60	163843073	-	BSUIS_A0838	-	hypothetical protein
797	 53.92	0	798514..798717	-	67	163843074	-	BSUIS_A0840	-	hypothetical protein
798	 52.19	-1	799225..799590	+	121	163843075	nuoA	BSUIS_A0841	-	NADH dehydrogenase subunit A
799	 60.14	0	799581..800162	+	193	163843076	-	BSUIS_A0842	-	NADH dehydrogenase subunit B
800	 56.81	0	800275..800883	+	202	163843077	nuoC	BSUIS_A0843	-	NADH dehydrogenase subunit C
801	 58.02	0	800901..802091	+	396	163843078	nuoD	BSUIS_A0844	-	NADH dehydrogenase subunit D
802	 58.68	0	802091..802804	+	237	163843079	nuoE	BSUIS_A0845	-	NADH dehydrogenase subunit E
803	 59.40	0	802808..804115	+	435	163843080	nuoF	BSUIS_A0846	-	NADH dehydrogenase I subunit F
804	 61.15	0	804250..806334	+	694	163843081	-	BSUIS_A0847	-	NADH dehydrogenase subunit G
805	 55.27	0	806354..807397	+	347	163843082	nuoH	BSUIS_A0848	-	NADH dehydrogenase subunit H
806	 58.13	0	807410..807901	+	163	163843083	-	BSUIS_A0849	-	NADH dehydrogenase subunit I
807	 57.77	0	808075..808692	+	205	163843084	nuoJ	BSUIS_A0850	-	NADH dehydrogenase subunit J
808	 51.78	-1	808703..809011	+	102	163843085	nuoK	BSUIS_A0851	-	NADH dehydrogenase subunit K
809	 56.95	0	809019..811004	+	661	163843086	-	BSUIS_A0852	-	NADH dehydrogenase subunit L
810	 57.65	0	811004..812512	+	502	163843087	-	BSUIS_A0853	-	NADH dehydrogenase subunit M
811	 57.06	0	812534..813970	+	478	163843088	-	BSUIS_A0854	-	NADH dehydrogenase subunit N
812	 58.52	0	813996..814793	+	265	163843089	-	BSUIS_A0855	-	biotin--acetyl-CoA-carboxylase ligase
813	 59.69	0	814987..816663	+	558	163843090	-	BSUIS_A0856	-	hypothetical protein
814	 57.28	0	816703..817107	+	134	163843091	-	BSUIS_A0857	-	methylmalonyl-CoA epimerase
815	 53.70	0	817110..817379	+	89	163843092	-	BSUIS_A0858	-	hypothetical protein
816	 53.90	0	817737..817877	+	46	163843093	-	BSUIS_A0859	-	hypothetical protein
817	 38.71	-2	817908..818000	+	30	163843094	-	BSUIS_A0860	-	hypothetical protein
818	 57.19	0	818227..819555	+	442	163843095	proS	BSUIS_A0861	-	prolyl-tRNA synthetase
819	 57.29	0	819597..820865	+	422	163843096	-	BSUIS_A0862	-	LolC/E family lipoprotein releasing system, transmembrane protein
820	 61.26	0	820865..821548	+	227	163843097	lolD	BSUIS_A0863	-	lipoprotein-releasing system ATP-binding protein lolD
821	 57.99	0	822207..825698	+	1163	163843098	dnaE	BSUIS_A0864	-	DNA polymerase III subunit alpha
822	 55.56	0	825739..825936	+	65	163843099	-	BSUIS_A0865	-	hypothetical protein
823	 51.69	-1	825981..826394	-	137	163843100	-	BSUIS_A0866	-	hypothetical protein
824	 52.98	0	826666..827688	-	340	163843101	-	BSUIS_A0867	-	extensin family protein
825	 57.44	0	827972..828589	+	205	163843102	rpsD	BSUIS_A0868	-	30S ribosomal protein S4
826	 45.37	-2	829044..829151	-	35	163843103	-	BSUIS_A0869	-	hypothetical protein
827	 55.10	0	829098..829979	+	293	163843104	-	BSUIS_A0870	-	PP-loop domain-containing protein
828	 57.85	0	829966..830793	+	275	163843105	-	BSUIS_A0871	-	hypothetical protein
829	 58.06	0	831008..832273	-	421	163843106	-	BSUIS_A0872	-	Bcr/CflA subfamily drug resistance transporter
830	 55.91	0	832272..832457	+	61	163843107	-	BSUIS_A0873	-	hypothetical protein
831	 50.45	-1	832544..832876	-	110	163843108	-	BSUIS_A0874	-	glutaredoxin-like protein
832	 58.55	0	833061..833294	-	77	163843109	-	BSUIS_A0875	-	hypothetical protein
833	 59.15	0	833564..835786	-	740	163843110	purL	BSUIS_A0876	-	phosphoribosylformylglycinamidine synthase II
834	 62.44	+1	835973..836374	-	133	163843111	-	BSUIS_A0877	-	hypothetical protein
835	 57.41	0	836434..837081	-	215	163843112	-	BSUIS_A0878	-	glutathione S-transferase domain-containing protein
836	 60.57	0	837333..838004	-	223	163843113	purQ	BSUIS_A0879	-	phosphoribosylformylglycinamidine synthase subunit I
837	 58.85	0	838027..838269	-	80	163843114	purS	BSUIS_A0880	-	phosphoribosylformylglycinamidine synthase subunit PurS
838	 55.95	0	838385..839149	-	254	163843115	purC	BSUIS_A0881	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
839	 56.17	0	839405..839728	+	107	163843116	-	BSUIS_A0882	-	hypothetical protein
840	 58.73	0	840610..841176	-	188	163843117	-	BSUIS_A0884	-	hypothetical protein
841	 53.92	0	841375..841476	-	33	163843118	-	BSUIS_A0885	-	hypothetical protein
842	 61.53	+1	841445..842320	+	291	163843119	-	BSUIS_A0886	-	biphenyl-2,3-diol 1,2-dioxygenase 3
843	 59.60	0	842541..843842	-	433	163843120	purB	BSUIS_A0887	-	adenylosuccinate lyase
844	 60.18	0	843869..844546	-	225	163843121	rpe	BSUIS_A0888	-	ribulose-phosphate 3-epimerase
845	 57.39	0	844704..845630	-	308	163843122	-	BSUIS_A0889	-	lipid A biosynthesis lauroyl acyltransferase
846	 61.42	+1	845644..846672	-	342	163843123	-	BSUIS_A0890	-	hypothetical protein
847	 60.64	0	846754..848031	-	425	163843124	tcmK	BSUIS_A0891	-	3-oxoacyl-(acyl carrier protein) synthase II
848	 60.91	0	848033..849214	-	393	163843125	-	BSUIS_A0892	-	3-oxoacyl-(acyl carrier protein) synthase II
849	 51.42	-1	849362..849643	-	93	163843126	acpXL	BSUIS_A0893	-	acyl carrier protein
850	 59.97	0	849844..850605	-	253	163843127	-	BSUIS_A0894	-	hypothetical protein
851	 56.79	0	850821..851843	+	340	163843128	-	BSUIS_A0895	-	aldose 1-epimerase
852	 60.02	0	851840..852757	-	305	163843129	kdgK	BSUIS_A0896	-	2-dehydro-3-deoxygluconokinase
853	 58.06	0	852958..853689	+	243	163843130	-	BSUIS_A0897	-	hypothetical protein
854	 59.21	0	853693..854832	+	379	163843131	phnM	BSUIS_A0898	-	phosphonate metabolism protein PhnM
855	 58.48	0	854829..855512	-	227	163843132	-	BSUIS_A0899	-	HAD family hydrolase
856	 54.76	0	855675..856556	+	293	163843133	-	BSUIS_A0900	-	extracellular solute-binding protein
857	 59.43	0	856748..857770	+	340	163843134	-	BSUIS_A0901	-	tRNA-dihydrouridine synthase A
858	 57.59	0	857767..858471	-	234	163843135	-	BSUIS_A0902	-	hypothetical protein
859	 54.67	0	858471..858620	-	49	163843136	-	BSUIS_A0903	-	hypothetical protein
860	 62.20	+1	858685..859467	-	260	163843137	cobV	BSUIS_A0904	-	cobalamin synthase
861	 62.25	+1	859621..860640	+	339	163843138	cobU	BSUIS_A0905	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
862	 54.58	0	860749..861228	-	159	163843139	-	BSUIS_A0906	-	hypothetical protein
863	 59.81	0	861357..861998	-	213	163843140	-	BSUIS_A0907	-	hypothetical protein
864	 57.37	0	862095..862664	-	189	163843141	-	BSUIS_A0908	-	nuclease
865	 47.31	-2	862635..862913	+	92	163843142	-	BSUIS_A0909	-	hypothetical protein
866	 57.09	0	863285..864088	+	267	163843143	exoR	BSUIS_A0910	-	exopolysaccharide production negative regulator precursor
867	 54.66	0	864147..864929	-	260	163843144	-	BSUIS_A0911	-	exodeoxyribonuclease III (xth)
868	 57.63	0	865098..865805	+	235	163843145	-	BSUIS_A0912	-	hypothetical protein
869	 54.43	0	865886..866212	-	108	163843146	-	BSUIS_A0913	-	iron-sulfur cluster assembly accessory protein
870	 58.64	0	866379..867587	+	402	163843147	dgt	BSUIS_A0914	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
871	 56.83	0	867809..869566	+	585	163843148	argS	BSUIS_A0915	-	arginyl-tRNA synthetase
872	 59.26	0	869778..872732	+	984	163843149	-	BSUIS_A0916	-	Oleosin B6
873	 59.31	0	872933..873952	+	339	163843150	nagZ	BSUIS_A0917	-	Beta-hexosaminidase
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.