IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
745	 60.28	0	755444..756601	-	385	163843022	rnd	BSUIS_A0785	-	ribonuclease D
746	 58.45	0	756828..758615	+	595	163843023	aspS	BSUIS_A0786	-	aspartyl-tRNA synthetase
747	 55.64	0	758699..759895	-	398	163843024	-	BSUIS_A0787	-	hypothetical protein
748	 46.25	-2	759950..760189	+	79	163843025	-	BSUIS_A0788	-	hypothetical protein
749	 58.11	0	760295..762607	+	770	163843026	parC	BSUIS_A0789	-	DNA topoisomerase IV subunit A
750	 58.53	0	762786..763535	-	249	163843027	ate	BSUIS_A0790	-	arginyl-tRNA-protein transferase
751	 54.14	0	763656..764126	-	156	163843028	-	BSUIS_A0791	-	RDD domain-containing protein
752	 59.34	0	764273..765310	-	345	163843029	hemB	BSUIS_A0792	-	delta-aminolevulinic acid dehydratase
753	 58.38	0	765478..766527	+	349	163843030	-	BSUIS_A0793	-	enoyl-CoA hydratase
754	 58.39	0	766541..766975	+	144	163843031	-	BSUIS_A0794	-	hypothetical protein
755	 54.83	0	767206..767805	+	199	163843032	-	BSUIS_A0795	-	MarR family transcriptional regulator
756	 53.19	0	767892..768032	-	46	163843033	-	BSUIS_A0796	-	hypothetical protein
757	 58.22	0	768167..769468	+	433	163843034	-	BSUIS_A0797	-	peptidoglycan binding domain-containing protein
758	 52.59	-1	769561..769695	+	44	163843035	-	BSUIS_A0798	-	hypothetical protein
759	 58.54	0	769699..771015	+	438	163843036	glyA	BSUIS_A0799	-	serine hydroxymethyltransferase
760	 58.07	0	771257..771733	+	158	163843037	-	BSUIS_A0800	-	transcriptional regulator NrdR
761	 61.85	+1	771735..772856	+	373	163843038	ribD	BSUIS_A0801	-	riboflavin biosynthesis protein RibD
762	 57.31	0	772856..773464	+	202	163843039	ribE	BSUIS_A0802	-	riboflavin synthase subunit alpha
763	 58.23	0	773559..774020	+	153	163843040	ribH	BSUIS_A0803	-	riboflavin synthase subunit beta
764	 59.30	0	774026..774541	+	171	163843041	nusB	BSUIS_A0804	-	transcription antitermination protein NusB
765	 59.62	0	774992..777148	+	718	163843042	-	BSUIS_A0805	-	membrane-bound proton-translocating pyrophosphatase
766	 58.38	0	777220..777726	-	168	163843043	-	BSUIS_A0806	-	SmpA/OmlA domain-containing protein
767	 53.33	0	777828..778382	+	184	163843044	-	BSUIS_A0807	-	ubiquinol-cytochrome C chaperone
768	 55.38	0	778502..779059	+	185	163843045	-	BSUIS_A0808	-	hypothetical protein
769	 43.75	-2	779107..779202	-	31	163843046	-	BSUIS_A0809	-	hypothetical protein
770	 58.12	0	779177..780217	+	346	163843047	plsX	BSUIS_A0810	-	putative glycerol-3-phosphate acyltransferase PlsX
771	 59.47	0	780465..781436	+	323	163843048	fabH	BSUIS_A0811	-	3-oxoacyl-(acyl carrier protein) synthase III
772	 52.47	-1	781555..781878	+	107	163843049	ihfA	BSUIS_A0812	-	integration host factor subunit alpha
773	 44.17	-2	782058..782177	+	39	163843050	-	BSUIS_A0813	-	hypothetical protein
774	 58.01	0	782412..782954	+	180	163843051	-	BSUIS_A0814	-	HTH-type transcriptional regulator in himA 3' region
775	 52.52	-1	783004..783321	-	105	163843052	sugE	BSUIS_A0815	-	quaternary ammonium compound-resistance protein sugE
776	 55.56	0	783668..785206	-	512	163843053	-	BSUIS_A0817	-	CPS biosynthesis glycosyltransferase
777	 56.02	0	785336..785551	-	71	163843054	-	BSUIS_A0818	-	glycosyl transferase group 1
778	 53.57	0	785560..786147	-	195	163843055	-	BSUIS_A0819	-	polysaccharide export protein
779	 54.90	0	786271..786933	+	220	163843056	-	BSUIS_A0820	-	exopolysaccharide transport protein family
780	 53.88	0	787001..787219	-	72	163843057	-	BSUIS_A0821	-	hypothetical protein
781	 57.72	0	787360..787728	+	122	163843058	-	BSUIS_A0822	-	transposase for insertion sequence element IS6501
782	 49.29	-1	787836..788117	+	93	163843059	-	BSUIS_A0823	-	transposase for insertion sequence element IS6501
783	 58.59	0	788415..789491	+	358	163843060	-	BSUIS_A0824	-	cytochrome oxidase assembly
784	 59.16	0	789644..790576	-	310	163843061	argC	BSUIS_A0825	-	N-acetyl-gamma-glutamyl-phosphate reductase
785	 59.41	0	790666..791616	-	316	163843062	speB	BSUIS_A0826	-	agmatinase
786	 61.22	0	791707..792183	-	158	163843063	rpsI	BSUIS_A0827	-	30S ribosomal protein S9
787	 57.42	0	792186..792650	-	154	163843064	rplM	BSUIS_A0828	-	50S ribosomal protein L13
788	 58.61	0	792886..793332	-	148	163843065	-	BSUIS_A0829	-	hypothetical protein
789	 57.24	0	793566..794849	+	427	163843066	-	BSUIS_A0830	-	O-acetylhomoserine aminocarboxypropyltransferase
790	 59.76	0	794921..795340	-	139	163843067	-	BSUIS_A0831	-	hypothetical protein
791	 49.44	-1	795390..795569	-	59	163843068	-	BSUIS_A0832	-	hypothetical protein
792	 46.08	-2	795903..796412	+	169	163843069	-	BSUIS_A0833	-	hypothetical protein
793	 47.98	-2	796409..796804	+	131	163843070	-	BSUIS_A0834	-	hypothetical protein
794	 51.49	-1	796858..797193	+	111	163843071	-	BSUIS_A0835	-	hypothetical protein
795	 48.76	-1	797250..797651	-	133	163843072	-	BSUIS_A0836	-	hypothetical protein
796	 44.26	-2	797948..798130	+	60	163843073	-	BSUIS_A0838	-	hypothetical protein
797	 53.92	0	798514..798717	-	67	163843074	-	BSUIS_A0840	-	hypothetical protein
798	 52.19	-1	799225..799590	+	121	163843075	nuoA	BSUIS_A0841	-	NADH dehydrogenase subunit A
799	 60.14	0	799581..800162	+	193	163843076	-	BSUIS_A0842	-	NADH dehydrogenase subunit B
800	 56.81	0	800275..800883	+	202	163843077	nuoC	BSUIS_A0843	-	NADH dehydrogenase subunit C
801	 58.02	0	800901..802091	+	396	163843078	nuoD	BSUIS_A0844	-	NADH dehydrogenase subunit D
802	 58.68	0	802091..802804	+	237	163843079	nuoE	BSUIS_A0845	-	NADH dehydrogenase subunit E
803	 59.40	0	802808..804115	+	435	163843080	nuoF	BSUIS_A0846	-	NADH dehydrogenase I subunit F
804	 61.15	0	804250..806334	+	694	163843081	-	BSUIS_A0847	-	NADH dehydrogenase subunit G
805	 55.27	0	806354..807397	+	347	163843082	nuoH	BSUIS_A0848	-	NADH dehydrogenase subunit H
806	 58.13	0	807410..807901	+	163	163843083	-	BSUIS_A0849	-	NADH dehydrogenase subunit I
807	 57.77	0	808075..808692	+	205	163843084	nuoJ	BSUIS_A0850	-	NADH dehydrogenase subunit J
808	 51.78	-1	808703..809011	+	102	163843085	nuoK	BSUIS_A0851	-	NADH dehydrogenase subunit K
809	 56.95	0	809019..811004	+	661	163843086	-	BSUIS_A0852	-	NADH dehydrogenase subunit L
810	 57.65	0	811004..812512	+	502	163843087	-	BSUIS_A0853	-	NADH dehydrogenase subunit M
811	 57.06	0	812534..813970	+	478	163843088	-	BSUIS_A0854	-	NADH dehydrogenase subunit N
812	 58.52	0	813996..814793	+	265	163843089	-	BSUIS_A0855	-	biotin--acetyl-CoA-carboxylase ligase
813	 59.69	0	814987..816663	+	558	163843090	-	BSUIS_A0856	-	hypothetical protein
814	 57.28	0	816703..817107	+	134	163843091	-	BSUIS_A0857	-	methylmalonyl-CoA epimerase
815	 53.70	0	817110..817379	+	89	163843092	-	BSUIS_A0858	-	hypothetical protein
816	 53.90	0	817737..817877	+	46	163843093	-	BSUIS_A0859	-	hypothetical protein
817	 38.71	-2	817908..818000	+	30	163843094	-	BSUIS_A0860	-	hypothetical protein
818	 57.19	0	818227..819555	+	442	163843095	proS	BSUIS_A0861	-	prolyl-tRNA synthetase
819	 57.29	0	819597..820865	+	422	163843096	-	BSUIS_A0862	-	LolC/E family lipoprotein releasing system, transmembrane protein
820	 61.26	0	820865..821548	+	227	163843097	lolD	BSUIS_A0863	-	lipoprotein-releasing system ATP-binding protein lolD
821	 57.99	0	822207..825698	+	1163	163843098	dnaE	BSUIS_A0864	-	DNA polymerase III subunit alpha
822	 55.56	0	825739..825936	+	65	163843099	-	BSUIS_A0865	-	hypothetical protein
823	 51.69	-1	825981..826394	-	137	163843100	-	BSUIS_A0866	-	hypothetical protein
824	 52.98	0	826666..827688	-	340	163843101	-	BSUIS_A0867	-	extensin family protein
825	 57.44	0	827972..828589	+	205	163843102	rpsD	BSUIS_A0868	-	30S ribosomal protein S4
826	 45.37	-2	829044..829151	-	35	163843103	-	BSUIS_A0869	-	hypothetical protein
827	 55.10	0	829098..829979	+	293	163843104	-	BSUIS_A0870	-	PP-loop domain-containing protein
828	 57.85	0	829966..830793	+	275	163843105	-	BSUIS_A0871	-	hypothetical protein
829	 58.06	0	831008..832273	-	421	163843106	-	BSUIS_A0872	-	Bcr/CflA subfamily drug resistance transporter
830	 55.91	0	832272..832457	+	61	163843107	-	BSUIS_A0873	-	hypothetical protein
831	 50.45	-1	832544..832876	-	110	163843108	-	BSUIS_A0874	-	glutaredoxin-like protein
832	 58.55	0	833061..833294	-	77	163843109	-	BSUIS_A0875	-	hypothetical protein
833	 59.15	0	833564..835786	-	740	163843110	purL	BSUIS_A0876	-	phosphoribosylformylglycinamidine synthase II
834	 62.44	+1	835973..836374	-	133	163843111	-	BSUIS_A0877	-	hypothetical protein
835	 57.41	0	836434..837081	-	215	163843112	-	BSUIS_A0878	-	glutathione S-transferase domain-containing protein
836	 60.57	0	837333..838004	-	223	163843113	purQ	BSUIS_A0879	-	phosphoribosylformylglycinamidine synthase subunit I
837	 58.85	0	838027..838269	-	80	163843114	purS	BSUIS_A0880	-	phosphoribosylformylglycinamidine synthase subunit PurS
838	 55.95	0	838385..839149	-	254	163843115	purC	BSUIS_A0881	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
839	 56.17	0	839405..839728	+	107	163843116	-	BSUIS_A0882	-	hypothetical protein
840	 58.73	0	840610..841176	-	188	163843117	-	BSUIS_A0884	-	hypothetical protein
841	 53.92	0	841375..841476	-	33	163843118	-	BSUIS_A0885	-	hypothetical protein
842	 61.53	+1	841445..842320	+	291	163843119	-	BSUIS_A0886	-	biphenyl-2,3-diol 1,2-dioxygenase 3
843	 59.60	0	842541..843842	-	433	163843120	purB	BSUIS_A0887	-	adenylosuccinate lyase
844	 60.18	0	843869..844546	-	225	163843121	rpe	BSUIS_A0888	-	ribulose-phosphate 3-epimerase
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.