IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
667	 60.13	0	678159..678938	+	259	163842944	-	BSUIS_A0701	-	hypothetical protein
668	 60.00	0	678993..679607	+	204	163842945	-	BSUIS_A0702	-	amino acid transporter LysE
669	 57.74	0	679584..679751	-	55	163842946	-	BSUIS_A0703	-	hypothetical protein
670	 48.15	-2	679756..679971	-	71	163842947	-	BSUIS_A0704	-	hypothetical protein
671	 59.17	0	680118..681638	+	506	163842948	cysS	BSUIS_A0705	-	cysteinyl-tRNA synthetase
672	 62.96	+1	681657..681791	+	44	163842949	-	BSUIS_A0706	-	hypothetical protein
673	 59.23	0	681791..683404	+	537	163842950	-	BSUIS_A0707	-	putative alpha-isopropylmalate/homocitrate synthase family transferase
674	 58.02	0	684702..686435	+	577	163842951	-	BSUIS_A0709	-	peptidase M23B
675	 59.45	0	686503..687333	-	276	163842952	ksgA	BSUIS_A0710	-	dimethyladenosine transferase
676	 59.97	0	687330..688598	-	422	163842953	pdxA	BSUIS_A0711	-	4-hydroxythreonine-4-phosphate dehydrogenase
677	 56.74	0	688426..689382	-	318	163842954	surA	BSUIS_A0712	-	chaperone surA precursor
678	 55.61	0	689710..692088	-	792	163842955	imp	BSUIS_A0713	-	organic solvent tolerance protein precursor
679	 54.45	0	692109..693197	-	362	163842956	-	BSUIS_A0714	-	permease YjgP/YjgQ family protein
680	 56.00	0	693194..694402	-	402	163842957	-	BSUIS_A0715	-	permease YjgP/YjgQ family protein
681	 46.06	-2	694575..694739	-	54	163842958	-	BSUIS_A0716	-	hypothetical protein
682	 58.57	0	694812..696305	+	497	163842959	pepA	BSUIS_A0717	-	leucyl aminopeptidase
683	 56.44	0	696377..696826	+	149	163842960	-	BSUIS_A0718	-	DNA polymerase III subunit chi
684	 62.06	+1	696826..697389	+	187	163842961	-	BSUIS_A0719	-	hypothetical protein
685	 58.65	0	697466..699349	-	627	163842962	-	BSUIS_A0720	-	ATP-binding sub-family F member 3 protein
686	 57.12	0	699392..699904	-	170	163842963	-	BSUIS_A0721	-	DinB family protein
687	 57.68	0	700133..700555	+	140	163842964	ndk	BSUIS_A0722	-	nucleoside diphosphate kinase
688	 57.21	0	700663..701466	-	267	163842965	-	BSUIS_A0723	-	protein of unknown function DUF306 Meta and HslJ
689	 56.71	0	701702..702193	-	163	163842966	-	BSUIS_A0724	-	molybdopterin biosynthesis MoaE protein
690	 53.49	0	702195..702452	-	85	163842967	moaD	BSUIS_A0725	-	molybdopterin converting factor, subunit 1
691	 55.38	0	702457..703041	-	194	163842968	pgsA	BSUIS_A0726	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
692	 59.58	0	703160..705232	-	690	163842969	uvrC	BSUIS_A0727	-	excinuclease ABC subunit C
693	 59.13	0	705232..705987	-	251	163842970	-	BSUIS_A0728	-	short chain dehydrogenase
694	 55.97	0	706192..706350	+	52	163842971	-	BSUIS_A0729	-	hypothetical protein
695	 58.10	0	706389..707030	+	213	163842972	-	BSUIS_A0730	-	25 kDa outer-membrane immunogenic protein precursor
696	 57.50	0	707127..707726	-	199	163842973	-	BSUIS_A0731	-	glutathione S-transferase domain-containing protein
697	 55.37	0	707644..707820	-	58	163842974	-	BSUIS_A0732	-	hypothetical protein
698	 58.55	0	707781..708470	-	229	163842975	-	BSUIS_A0733	-	ribonuclease precursor
699	 61.78	+1	708483..708953	-	156	163842976	-	BSUIS_A0734	-	hypothetical protein
700	 58.08	0	709036..709908	-	290	163842977	-	BSUIS_A0735	-	hypothetical protein
701	 62.17	+1	710065..710910	+	281	163842978	-	BSUIS_A0736	-	hypothetical protein
702	 59.33	0	710988..713114	+	708	163842979	-	BSUIS_A0737	-	nitrate reductase
703	 63.05	+1	714185..714709	-	174	163842980	-	BSUIS_A0739	-	hypothetical protein
704	 59.71	0	714884..715501	-	205	163842981	purN	BSUIS_A0740	-	phosphoribosylglycinamide formyltransferase
705	 60.65	0	715498..716577	-	359	163842982	purM	BSUIS_A0741	-	phosphoribosylaminoimidazole synthetase
706	 51.67	-1	716619..716798	-	59	163842983	-	BSUIS_A0742	-	hypothetical protein
707	 49.63	-1	716926..717060	-	44	163842984	-	BSUIS_A0743	-	hypothetical protein
708	 56.31	0	717067..718215	+	382	163842985	-	BSUIS_A0744	-	hypothetical protein
709	 60.06	0	718255..718950	+	231	163842986	-	BSUIS_A0745	-	hypothetical protein
710	 58.97	0	718947..719816	+	289	163842987	galE	BSUIS_A0746	-	UDP-glucose 4-epimerase
711	 62.47	+1	719813..720598	-	261	163842988	-	BSUIS_A0747	-	vegetative cell wall protein gp1 precursor
712	 58.58	0	720671..721375	-	234	163842989	-	BSUIS_A0748	-	short chain dehydrogenase/reductase family oxidoreductase
713	 50.00	-1	721537..721752	-	71	163842990	-	BSUIS_A0749	-	hypothetical protein
714	 39.74	-2	721766..721921	+	51	163842991	-	BSUIS_A0750	-	hypothetical protein
715	 58.36	0	722074..723747	-	557	163842992	-	BSUIS_A0751	-	L-lactate transport
716	 53.27	0	724281..724586	+	101	163842993	-	BSUIS_A0753	-	NADH-ubiquinone oxidoreductase 18 kDa subunit
717	 55.84	0	725152..725742	+	196	163842994	-	BSUIS_A0755	-	hypothetical protein
718	 52.94	0	725963..726574	-	203	163842995	-	BSUIS_A0756	-	hypothetical protein
719	 53.48	0	726899..727444	-	181	163842996	-	BSUIS_A0757	-	adenylate kinase
720	 52.34	-1	727441..728976	-	511	163842997	-	BSUIS_A0758	-	GCN5-related N-acetyltransferase
721	 51.70	-1	728951..729745	-	264	163842998	-	BSUIS_A0759	-	helix-turn-helix domain-containing protein
722	 43.33	-2	729770..730189	-	139	163842999	-	BSUIS_A0760	-	hypothetical protein
723	 53.40	0	730569..731465	+	298	163843000	-	BSUIS_A0761	-	hypothetical protein
724	 52.39	-1	731465..733579	+	704	163843001	-	BSUIS_A0762	-	integrase catalytic subunit
725	 52.16	-1	733572..734522	+	316	163843002	-	BSUIS_A0763	-	transposition protein
726	 46.90	-2	735340..736356	+	338	163843003	-	BSUIS_A0764	-	hypothetical protein
727	 47.98	-2	736394..736591	-	65	163843004	-	BSUIS_A0765	-	hypothetical protein
728	 46.64	-2	736832..738139	+	435	163843005	-	BSUIS_A0766	-	hypothetical protein
729	 57.00	0	740055..740933	+	292	163843006	-	BSUIS_A0769	-	hypothetical protein
730	 63.56	+1	741271..741495	-	74	163843007	-	BSUIS_A0770	-	hypothetical protein
731	 62.57	+1	741317..741829	-	170	163843008	-	BSUIS_A0771	-	SH3 type 3 domain-containing protein
732	 59.44	0	741989..742237	-	82	163843009	-	BSUIS_A0772	-	lipoprotein
733	 48.72	-1	742340..742495	-	51	163843010	-	BSUIS_A0773	-	hypothetical protein
734	 56.24	0	742482..743651	-	389	163843011	metC	BSUIS_A0774	-	cystathionine beta-lyase
735	 56.64	0	743862..744629	+	255	163843012	bcrC	BSUIS_A0775	-	bacitracin transport permease protein BCRC
736	 55.43	0	745085..746116	+	343	163843013	-	BSUIS_A0776	-	lysine-arginine-ornithine-binding periplasmic protein
737	 54.82	0	746150..746377	+	75	163843014	-	BSUIS_A0777	-	hypothetical protein
738	 56.78	0	746413..747606	+	397	163843015	-	BSUIS_A0778	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
739	 58.20	0	747609..748766	+	385	163843016	-	BSUIS_A0779	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
740	 54.90	0	748781..749596	+	271	163843017	bztD	BSUIS_A0780	-	glutamate/glutamine/aspartate/asparagine transport ATP-binding protein bztD
741	 59.20	0	749644..750849	-	401	163843018	-	BSUIS_A0781	-	salicylate hydroxylase
742	 54.51	0	750879..751133	-	84	163843019	-	BSUIS_A0782	-	hypothetical protein
743	 57.03	0	751419..753659	+	746	163843020	ppk	BSUIS_A0783	-	polyphosphate kinase
744	 59.13	0	753656..755194	+	512	163843021	-	BSUIS_A0784	-	Ppx/GppA phosphatase
745	 60.28	0	755444..756601	-	385	163843022	rnd	BSUIS_A0785	-	ribonuclease D
746	 58.45	0	756828..758615	+	595	163843023	aspS	BSUIS_A0786	-	aspartyl-tRNA synthetase
747	 55.64	0	758699..759895	-	398	163843024	-	BSUIS_A0787	-	hypothetical protein
748	 46.25	-2	759950..760189	+	79	163843025	-	BSUIS_A0788	-	hypothetical protein
749	 58.11	0	760295..762607	+	770	163843026	parC	BSUIS_A0789	-	DNA topoisomerase IV subunit A
750	 58.53	0	762786..763535	-	249	163843027	ate	BSUIS_A0790	-	arginyl-tRNA-protein transferase
751	 54.14	0	763656..764126	-	156	163843028	-	BSUIS_A0791	-	RDD domain-containing protein
752	 59.34	0	764273..765310	-	345	163843029	hemB	BSUIS_A0792	-	delta-aminolevulinic acid dehydratase
753	 58.38	0	765478..766527	+	349	163843030	-	BSUIS_A0793	-	enoyl-CoA hydratase
754	 58.39	0	766541..766975	+	144	163843031	-	BSUIS_A0794	-	hypothetical protein
755	 54.83	0	767206..767805	+	199	163843032	-	BSUIS_A0795	-	MarR family transcriptional regulator
756	 53.19	0	767892..768032	-	46	163843033	-	BSUIS_A0796	-	hypothetical protein
757	 58.22	0	768167..769468	+	433	163843034	-	BSUIS_A0797	-	peptidoglycan binding domain-containing protein
758	 52.59	-1	769561..769695	+	44	163843035	-	BSUIS_A0798	-	hypothetical protein
759	 58.54	0	769699..771015	+	438	163843036	glyA	BSUIS_A0799	-	serine hydroxymethyltransferase
760	 58.07	0	771257..771733	+	158	163843037	-	BSUIS_A0800	-	transcriptional regulator NrdR
761	 61.85	+1	771735..772856	+	373	163843038	ribD	BSUIS_A0801	-	riboflavin biosynthesis protein RibD
762	 57.31	0	772856..773464	+	202	163843039	ribE	BSUIS_A0802	-	riboflavin synthase subunit alpha
763	 58.23	0	773559..774020	+	153	163843040	ribH	BSUIS_A0803	-	riboflavin synthase subunit beta
764	 59.30	0	774026..774541	+	171	163843041	nusB	BSUIS_A0804	-	transcription antitermination protein NusB
765	 59.62	0	774992..777148	+	718	163843042	-	BSUIS_A0805	-	membrane-bound proton-translocating pyrophosphatase
766	 58.38	0	777220..777726	-	168	163843043	-	BSUIS_A0806	-	SmpA/OmlA domain-containing protein
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.