IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
607	 59.94	0	615481..617472	+	663	163842884	ccmF	BSUIS_A0639	-	cytochrome c-type biogenesis protein CcmF
608	 56.18	0	617469..617945	+	158	163842885	-	BSUIS_A0640	-	cytochrome c-type biogenesis protein ccl2 precursor
609	 60.51	0	618087..619628	+	513	163842886	degP	BSUIS_A0641	-	protease Do
610	 60.17	0	619722..620429	+	235	163842887	copR	BSUIS_A0642	-	transcriptional activator protein copR
611	 59.12	0	620429..621832	+	467	163842888	-	BSUIS_A0643	-	integral membrane sensor signal transduction histidine kinase
612	 58.20	0	621955..624906	+	983	163842889	glnE	BSUIS_A0644	-	glutamate-ammonia-ligase adenylyltransferase
613	 50.52	-1	624951..627062	-	703	163842890	lgtB	BSUIS_A0645	-	lacto-N-neotetraose biosynthesis glycosyl transferase lgtB
614	 60.67	0	627333..629684	-	783	163842891	-	BSUIS_A0646	-	PAS domain-containing protein
615	 59.31	0	630075..632726	-	883	163842892	pepN	BSUIS_A0647	-	aminopeptidase N
616	 58.60	0	632895..633911	+	338	163842893	-	BSUIS_A0648	-	hypothetical protein
617	 58.95	0	633916..635172	-	418	163842894	-	BSUIS_A0649	-	major facilitator transporter
618	 61.63	+1	635334..636206	-	290	163842895	-	BSUIS_A0650	-	uracil-DNA glycosylase
619	 59.34	0	636595..638286	+	563	163842896	-	BSUIS_A0651	-	electron transfer flavoprotein-ubiquinone oxidoreductase
620	 59.24	0	638398..639474	-	358	163842897	-	BSUIS_A0652	-	hypothetical protein
621	 58.42	0	639527..641029	-	500	163842898	amn	BSUIS_A0653	-	AMP nucleosidase
622	 55.35	0	641082..641240	+	52	163842899	-	BSUIS_A0654	-	hypothetical protein
623	 51.77	-1	641237..641518	+	93	163842900	-	BSUIS_A0655	-	hypothetical protein
624	 54.85	0	641596..642306	+	236	163842901	-	BSUIS_A0656	-	glutathione S-transferase domain-containing protein
625	 58.05	0	642365..642712	-	115	163842902	-	BSUIS_A0657	-	hypothetical protein
626	 53.68	0	642709..642993	-	94	163842903	-	BSUIS_A0658	-	hypothetical protein
627	 57.36	0	643212..643469	+	85	163842904	-	BSUIS_A0659	-	hypothetical protein
628	 54.91	0	643529..644302	-	257	163842905	-	BSUIS_A0660	-	hypothetical protein
629	 57.60	0	644954..645604	+	216	163842906	-	BSUIS_A0661	-	hypothetical protein
630	 62.13	+1	645649..646023	-	124	163842907	-	BSUIS_A0662	-	hypothetical protein
631	 55.47	0	646041..647174	-	377	163842908	hisC	BSUIS_A0663	-	histidinol-phosphate aminotransferase
632	 52.21	-1	647537..648463	-	308	163842909	xerC	BSUIS_A0664	-	tyrosine recombinase xerC
633	 56.44	0	649088..649840	-	250	163842910	ropA	BSUIS_A0665	-	Outer membrane protein IIIA precursor
634	 56.56	0	650641..651768	+	375	163842911	ropA	BSUIS_A0667	-	Outer membrane protein IIIA precursor
635	 56.50	0	650674..651834	-	386	163842912	-	BSUIS_A0668	-	hypothetical protein
636	 53.74	0	651912..652553	+	213	163842913	-	BSUIS_A0669	-	hypothetical protein
637	 49.18	-1	652609..652791	+	60	163842914	-	BSUIS_A0670	-	hypothetical protein
638	 57.78	0	652852..653526	+	224	163842915	-	BSUIS_A0671	-	hypothetical protein
639	 59.67	0	653589..655646	-	685	163842916	-	BSUIS_A0672	-	lytic transglycosylase catalytic
640	 61.21	0	655570..655734	+	54	163842917	-	BSUIS_A0673	-	hypothetical protein
641	 56.80	0	656122..657003	+	293	163842918	dapA	BSUIS_A0674	-	dihydrodipicolinate synthase
642	 55.77	0	657094..657570	+	158	163842919	smpB	BSUIS_A0675	-	SsrA-binding protein
643	 58.18	0	657806..658477	-	223	163842920	-	BSUIS_A0676	-	uracil-DNA glycosylase superfamily protein
644	 53.99	0	658508..659083	-	191	163842921	-	BSUIS_A0677	-	hypothetical protein
645	 35.26	-2	659283..659438	-	51	163842922	-	BSUIS_A0678	-	hypothetical protein
646	 56.22	0	659480..659881	+	133	163842923	rpoZ	BSUIS_A0679	-	DNA-directed RNA polymerase subunit omega
647	 57.79	0	660123..662375	+	750	163842924	-	BSUIS_A0680	-	RelA/SpoT family protein
648	 60.45	0	662383..662961	+	192	163842925	pyrE	BSUIS_A0681	-	orotate phosphoribosyltransferase
649	 56.61	0	663121..663876	+	251	163842926	fnrA	BSUIS_A0682	-	transcriptional activator protein fnrA
650	 57.30	0	664257..665591	+	444	163842927	hemN	BSUIS_A0683	-	coproporphyrinogen III oxidase
651	 59.24	0	665775..666986	-	403	163842928	-	BSUIS_A0684	-	major facilitator transporter
652	 58.49	0	667238..668020	+	260	163842929	-	BSUIS_A0685	-	AraC family transcriptional regulator
653	 61.11	0	668070..668645	+	191	163842930	-	BSUIS_A0686	-	hypothetical protein
654	 54.81	0	668642..669046	+	134	163842931	acpS	BSUIS_A0687	-	4'-phosphopantetheinyl transferase
655	 56.70	0	669157..669939	+	260	163842932	lepB	BSUIS_A0688	-	signal peptidase I
656	 58.81	0	669908..670645	+	245	163842933	rnc	BSUIS_A0689	-	ribonuclease III
657	 55.56	0	670688..670786	+	32	163842934	-	BSUIS_A0690	-	hypothetical protein
658	 59.01	0	671752..672495	+	247	163842935	recO	BSUIS_A0692	-	DNA repair protein RecO
659	 62.16	+1	672473..672982	-	169	163842936	-	BSUIS_A0693	-	hypothetical protein
660	 59.90	0	672979..673599	-	206	163842937	-	BSUIS_A0694	-	hypothetical protein
661	 57.52	0	673599..674462	-	287	163842938	-	BSUIS_A0695	-	glycine cleavage T-protein barrel
662	 59.78	0	674548..675882	+	444	163842939	pyrC	BSUIS_A0696	-	dihydroorotase
663	 58.69	0	675931..676695	-	254	163842940	-	BSUIS_A0697	-	hypothetical protein
664	 51.69	-1	676744..677010	-	88	163842941	-	BSUIS_A0698	-	hypothetical protein
665	 55.73	0	677167..677550	-	127	163842942	-	BSUIS_A0699	-	hypothetical protein
666	 58.33	0	677630..678073	-	147	163842943	-	BSUIS_A0700	-	NUDIX hydrolase
667	 60.13	0	678159..678938	+	259	163842944	-	BSUIS_A0701	-	hypothetical protein
668	 60.00	0	678993..679607	+	204	163842945	-	BSUIS_A0702	-	amino acid transporter LysE
669	 57.74	0	679584..679751	-	55	163842946	-	BSUIS_A0703	-	hypothetical protein
670	 48.15	-2	679756..679971	-	71	163842947	-	BSUIS_A0704	-	hypothetical protein
671	 59.17	0	680118..681638	+	506	163842948	cysS	BSUIS_A0705	-	cysteinyl-tRNA synthetase
672	 62.96	+1	681657..681791	+	44	163842949	-	BSUIS_A0706	-	hypothetical protein
673	 59.23	0	681791..683404	+	537	163842950	-	BSUIS_A0707	-	putative alpha-isopropylmalate/homocitrate synthase family transferase
674	 58.02	0	684702..686435	+	577	163842951	-	BSUIS_A0709	-	peptidase M23B
675	 59.45	0	686503..687333	-	276	163842952	ksgA	BSUIS_A0710	-	dimethyladenosine transferase
676	 59.97	0	687330..688598	-	422	163842953	pdxA	BSUIS_A0711	-	4-hydroxythreonine-4-phosphate dehydrogenase
677	 56.74	0	688426..689382	-	318	163842954	surA	BSUIS_A0712	-	chaperone surA precursor
678	 55.61	0	689710..692088	-	792	163842955	imp	BSUIS_A0713	-	organic solvent tolerance protein precursor
679	 54.45	0	692109..693197	-	362	163842956	-	BSUIS_A0714	-	permease YjgP/YjgQ family protein
680	 56.00	0	693194..694402	-	402	163842957	-	BSUIS_A0715	-	permease YjgP/YjgQ family protein
681	 46.06	-2	694575..694739	-	54	163842958	-	BSUIS_A0716	-	hypothetical protein
682	 58.57	0	694812..696305	+	497	163842959	pepA	BSUIS_A0717	-	leucyl aminopeptidase
683	 56.44	0	696377..696826	+	149	163842960	-	BSUIS_A0718	-	DNA polymerase III subunit chi
684	 62.06	+1	696826..697389	+	187	163842961	-	BSUIS_A0719	-	hypothetical protein
685	 58.65	0	697466..699349	-	627	163842962	-	BSUIS_A0720	-	ATP-binding sub-family F member 3 protein
686	 57.12	0	699392..699904	-	170	163842963	-	BSUIS_A0721	-	DinB family protein
687	 57.68	0	700133..700555	+	140	163842964	ndk	BSUIS_A0722	-	nucleoside diphosphate kinase
688	 57.21	0	700663..701466	-	267	163842965	-	BSUIS_A0723	-	protein of unknown function DUF306 Meta and HslJ
689	 56.71	0	701702..702193	-	163	163842966	-	BSUIS_A0724	-	molybdopterin biosynthesis MoaE protein
690	 53.49	0	702195..702452	-	85	163842967	moaD	BSUIS_A0725	-	molybdopterin converting factor, subunit 1
691	 55.38	0	702457..703041	-	194	163842968	pgsA	BSUIS_A0726	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
692	 59.58	0	703160..705232	-	690	163842969	uvrC	BSUIS_A0727	-	excinuclease ABC subunit C
693	 59.13	0	705232..705987	-	251	163842970	-	BSUIS_A0728	-	short chain dehydrogenase
694	 55.97	0	706192..706350	+	52	163842971	-	BSUIS_A0729	-	hypothetical protein
695	 58.10	0	706389..707030	+	213	163842972	-	BSUIS_A0730	-	25 kDa outer-membrane immunogenic protein precursor
696	 57.50	0	707127..707726	-	199	163842973	-	BSUIS_A0731	-	glutathione S-transferase domain-containing protein
697	 55.37	0	707644..707820	-	58	163842974	-	BSUIS_A0732	-	hypothetical protein
698	 58.55	0	707781..708470	-	229	163842975	-	BSUIS_A0733	-	ribonuclease precursor
699	 61.78	+1	708483..708953	-	156	163842976	-	BSUIS_A0734	-	hypothetical protein
700	 58.08	0	709036..709908	-	290	163842977	-	BSUIS_A0735	-	hypothetical protein
701	 62.17	+1	710065..710910	+	281	163842978	-	BSUIS_A0736	-	hypothetical protein
702	 59.33	0	710988..713114	+	708	163842979	-	BSUIS_A0737	-	nitrate reductase
703	 63.05	+1	714185..714709	-	174	163842980	-	BSUIS_A0739	-	hypothetical protein
704	 59.71	0	714884..715501	-	205	163842981	purN	BSUIS_A0740	-	phosphoribosylglycinamide formyltransferase
705	 60.65	0	715498..716577	-	359	163842982	purM	BSUIS_A0741	-	phosphoribosylaminoimidazole synthetase
706	 51.67	-1	716619..716798	-	59	163842983	-	BSUIS_A0742	-	hypothetical protein
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.