IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
562	 60.88	0	574721..575083	-	120	163842839	-	BSUIS_A0590	-	hypothetical protein
563	 59.52	0	575419..576930	+	503	163842840	-	BSUIS_A0591	-	hypothetical protein
564	 60.81	0	577128..577844	-	238	163842841	-	BSUIS_A0592	-	ErfK/YbiS/YcfS/YnhG family protein
565	 58.26	0	578147..578800	-	217	163842842	dehII	BSUIS_A0593	-	haloacid dehalogenase, type II
566	 54.33	0	579023..579622	+	199	163842843	sodB	BSUIS_A0594	-	superoxide dismutase (Fe)
567	 56.42	0	579668..580243	+	191	163842844	-	BSUIS_A0595	-	hypothetical protein
568	 58.14	0	579794..580180	-	128	163842845	-	BSUIS_A0596	-	hypothetical protein
569	 57.75	0	580247..582355	-	702	163842846	ptrB	BSUIS_A0597	-	protease 2
570	 44.62	-2	582779..582973	+	64	163842847	-	BSUIS_A0598	-	hypothetical protein
571	 53.85	0	582928..583356	+	142	163842848	rosAR	BSUIS_A0599	-	transcriptional regulatory protein rosAr
572	 54.81	0	583564..583875	-	103	163842849	-	BSUIS_A0600	-	hypothetical protein
573	 57.02	0	584057..584512	+	151	163842850	-	BSUIS_A0601	-	hypothetical protein
574	 59.37	0	584509..585303	+	264	163842851	-	BSUIS_A0602	-	hypothetical protein
575	 60.16	0	585394..586731	+	445	163842852	iaaH	BSUIS_A0603	-	amidase
576	 59.62	0	586772..587197	-	141	163842853	-	BSUIS_A0604	-	hypothetical protein
577	 56.34	0	587277..587741	-	154	163842854	-	BSUIS_A0605	-	hypothetical protein
578	 59.23	0	588032..589861	+	609	163842855	-	BSUIS_A0606	-	integral membrane sensor signal transduction histidine kinase
579	 60.18	0	589788..590804	+	338	163842856	-	BSUIS_A0607	-	peptidoglycan binding domain-containing protein
580	 57.18	0	590818..591165	+	115	163842857	-	BSUIS_A0608	-	hypothetical protein
581	 58.50	0	591176..592252	-	358	163842858	-	BSUIS_A0609	-	hypothetical protein
582	 54.88	0	592450..592992	-	180	163842859	-	BSUIS_A0610	-	hypothetical protein
583	 62.91	+1	592985..593596	-	203	163842860	-	BSUIS_A0611	-	hypothetical protein
584	 59.20	0	593603..595759	-	718	163842861	-	BSUIS_A0612	-	1A family penicillin-binding protein
585	 60.04	0	596117..596629	+	170	163842862	-	BSUIS_A0613	-	hypothetical protein
586	 64.81	+1	596592..597827	+	411	163842863	-	BSUIS_A0614	-	hypothetical protein
587	 61.98	+1	597859..599052	+	397	163842864	-	BSUIS_A0615	-	HK97 family phage portal protein
588	 61.38	+1	599049..599426	+	125	163842865	-	BSUIS_A0616	-	hypothetical protein
589	 62.63	+1	599413..600081	+	222	163842866	-	BSUIS_A0617	-	HK97 family phage prohead protease
590	 60.08	0	600103..601377	+	424	163842867	-	BSUIS_A0618	-	HK97 family phage major capsid protein
591	 58.91	0	601542..602108	+	188	163842868	-	BSUIS_A0619	-	hypothetical protein
592	 58.11	0	602105..602443	+	112	163842869	-	BSUIS_A0620	-	phage head-tail adaptor
593	 55.95	0	602440..602607	+	55	163842870	-	BSUIS_A0621	-	hypothetical protein
594	 58.33	0	602567..602974	+	135	163842871	-	BSUIS_A0622	-	hypothetical protein
595	 58.70	0	603015..603428	+	137	163842872	-	BSUIS_A0623	-	TP901-1 family phage major tail protein
596	 62.28	+1	603425..603766	+	113	163842873	-	BSUIS_A0624	-	hypothetical protein
597	 63.37	+1	603985..604530	+	181	163842874	-	BSUIS_A0625	-	phage tail protein
598	 60.73	0	605134..606009	+	291	163842875	-	BSUIS_A0628	-	phage protein
599	 64.37	+1	606006..606440	+	144	163842876	-	BSUIS_A0629	-	cell wall endopeptidase
600	 56.04	0	610364..610570	+	68	163842877	-	BSUIS_A0632	-	hypothetical protein
601	 62.63	+1	610732..611028	+	98	163842878	-	BSUIS_A0633	-	hypothetical protein
602	 57.97	0	611107..611796	+	229	163842879	-	BSUIS_A0634	-	two component transcriptional regulator
603	 58.66	0	611946..613181	+	411	163842880	phoQ	BSUIS_A0635	-	sensor protein phoQ
604	 58.85	0	613242..613727	+	161	163842881	omp	BSUIS_A0636	-	17 kDa surface antigen precursor
605	 61.75	+1	613828..614967	+	379	163842882	-	BSUIS_A0637	-	cytochrome c-type biogenesis protein
606	 59.44	0	614964..615461	+	165	163842883	ccmE	BSUIS_A0638	-	cytochrome c-type biogenesis protein CcmE
607	 59.94	0	615481..617472	+	663	163842884	ccmF	BSUIS_A0639	-	cytochrome c-type biogenesis protein CcmF
608	 56.18	0	617469..617945	+	158	163842885	-	BSUIS_A0640	-	cytochrome c-type biogenesis protein ccl2 precursor
609	 60.51	0	618087..619628	+	513	163842886	degP	BSUIS_A0641	-	protease Do
610	 60.17	0	619722..620429	+	235	163842887	copR	BSUIS_A0642	-	transcriptional activator protein copR
611	 59.12	0	620429..621832	+	467	163842888	-	BSUIS_A0643	-	integral membrane sensor signal transduction histidine kinase
612	 58.20	0	621955..624906	+	983	163842889	glnE	BSUIS_A0644	-	glutamate-ammonia-ligase adenylyltransferase
613	 50.52	-1	624951..627062	-	703	163842890	lgtB	BSUIS_A0645	-	lacto-N-neotetraose biosynthesis glycosyl transferase lgtB
614	 60.67	0	627333..629684	-	783	163842891	-	BSUIS_A0646	-	PAS domain-containing protein
615	 59.31	0	630075..632726	-	883	163842892	pepN	BSUIS_A0647	-	aminopeptidase N
616	 58.60	0	632895..633911	+	338	163842893	-	BSUIS_A0648	-	hypothetical protein
617	 58.95	0	633916..635172	-	418	163842894	-	BSUIS_A0649	-	major facilitator transporter
618	 61.63	+1	635334..636206	-	290	163842895	-	BSUIS_A0650	-	uracil-DNA glycosylase
619	 59.34	0	636595..638286	+	563	163842896	-	BSUIS_A0651	-	electron transfer flavoprotein-ubiquinone oxidoreductase
620	 59.24	0	638398..639474	-	358	163842897	-	BSUIS_A0652	-	hypothetical protein
621	 58.42	0	639527..641029	-	500	163842898	amn	BSUIS_A0653	-	AMP nucleosidase
622	 55.35	0	641082..641240	+	52	163842899	-	BSUIS_A0654	-	hypothetical protein
623	 51.77	-1	641237..641518	+	93	163842900	-	BSUIS_A0655	-	hypothetical protein
624	 54.85	0	641596..642306	+	236	163842901	-	BSUIS_A0656	-	glutathione S-transferase domain-containing protein
625	 58.05	0	642365..642712	-	115	163842902	-	BSUIS_A0657	-	hypothetical protein
626	 53.68	0	642709..642993	-	94	163842903	-	BSUIS_A0658	-	hypothetical protein
627	 57.36	0	643212..643469	+	85	163842904	-	BSUIS_A0659	-	hypothetical protein
628	 54.91	0	643529..644302	-	257	163842905	-	BSUIS_A0660	-	hypothetical protein
629	 57.60	0	644954..645604	+	216	163842906	-	BSUIS_A0661	-	hypothetical protein
630	 62.13	+1	645649..646023	-	124	163842907	-	BSUIS_A0662	-	hypothetical protein
631	 55.47	0	646041..647174	-	377	163842908	hisC	BSUIS_A0663	-	histidinol-phosphate aminotransferase
632	 52.21	-1	647537..648463	-	308	163842909	xerC	BSUIS_A0664	-	tyrosine recombinase xerC
633	 56.44	0	649088..649840	-	250	163842910	ropA	BSUIS_A0665	-	Outer membrane protein IIIA precursor
634	 56.56	0	650641..651768	+	375	163842911	ropA	BSUIS_A0667	-	Outer membrane protein IIIA precursor
635	 56.50	0	650674..651834	-	386	163842912	-	BSUIS_A0668	-	hypothetical protein
636	 53.74	0	651912..652553	+	213	163842913	-	BSUIS_A0669	-	hypothetical protein
637	 49.18	-1	652609..652791	+	60	163842914	-	BSUIS_A0670	-	hypothetical protein
638	 57.78	0	652852..653526	+	224	163842915	-	BSUIS_A0671	-	hypothetical protein
639	 59.67	0	653589..655646	-	685	163842916	-	BSUIS_A0672	-	lytic transglycosylase catalytic
640	 61.21	0	655570..655734	+	54	163842917	-	BSUIS_A0673	-	hypothetical protein
641	 56.80	0	656122..657003	+	293	163842918	dapA	BSUIS_A0674	-	dihydrodipicolinate synthase
642	 55.77	0	657094..657570	+	158	163842919	smpB	BSUIS_A0675	-	SsrA-binding protein
643	 58.18	0	657806..658477	-	223	163842920	-	BSUIS_A0676	-	uracil-DNA glycosylase superfamily protein
644	 53.99	0	658508..659083	-	191	163842921	-	BSUIS_A0677	-	hypothetical protein
645	 35.26	-2	659283..659438	-	51	163842922	-	BSUIS_A0678	-	hypothetical protein
646	 56.22	0	659480..659881	+	133	163842923	rpoZ	BSUIS_A0679	-	DNA-directed RNA polymerase subunit omega
647	 57.79	0	660123..662375	+	750	163842924	-	BSUIS_A0680	-	RelA/SpoT family protein
648	 60.45	0	662383..662961	+	192	163842925	pyrE	BSUIS_A0681	-	orotate phosphoribosyltransferase
649	 56.61	0	663121..663876	+	251	163842926	fnrA	BSUIS_A0682	-	transcriptional activator protein fnrA
650	 57.30	0	664257..665591	+	444	163842927	hemN	BSUIS_A0683	-	coproporphyrinogen III oxidase
651	 59.24	0	665775..666986	-	403	163842928	-	BSUIS_A0684	-	major facilitator transporter
652	 58.49	0	667238..668020	+	260	163842929	-	BSUIS_A0685	-	AraC family transcriptional regulator
653	 61.11	0	668070..668645	+	191	163842930	-	BSUIS_A0686	-	hypothetical protein
654	 54.81	0	668642..669046	+	134	163842931	acpS	BSUIS_A0687	-	4'-phosphopantetheinyl transferase
655	 56.70	0	669157..669939	+	260	163842932	lepB	BSUIS_A0688	-	signal peptidase I
656	 58.81	0	669908..670645	+	245	163842933	rnc	BSUIS_A0689	-	ribonuclease III
657	 55.56	0	670688..670786	+	32	163842934	-	BSUIS_A0690	-	hypothetical protein
658	 59.01	0	671752..672495	+	247	163842935	recO	BSUIS_A0692	-	DNA repair protein RecO
659	 62.16	+1	672473..672982	-	169	163842936	-	BSUIS_A0693	-	hypothetical protein
660	 59.90	0	672979..673599	-	206	163842937	-	BSUIS_A0694	-	hypothetical protein
661	 57.52	0	673599..674462	-	287	163842938	-	BSUIS_A0695	-	glycine cleavage T-protein barrel
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.