IslandPathversion 1.0

IslandPath Analysis: Brucella suis ATCC 23445



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 4.26
Brucella suis ATCC 23445 chromosome I, complete sequence - 1..1923763
1921 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
523	 45.98	-2	536987..537769	-	260	163842800	rfbD	BSUIS_A0551	-	O-antigen export system permease protein rfbD
524	 47.19	-2	537784..538887	-	367	163842801	rbmB	BSUIS_A0552	-	L-glutamine:2-deoxy-scyllo-inosose aminotransferase
525	 48.03	-2	538895..539983	-	362	163842802	gmd	BSUIS_A0553	-	GDP-mannose 4,6-dehydratase
526	 60.37	0	540502..540930	+	142	163842803	-	BSUIS_A0554	-	hypothetical protein
527	 59.47	0	540849..541223	+	124	163842804	-	BSUIS_A0555	-	transposase for insertion sequence element IS6501
528	 53.08	0	541253..542047	+	264	163842805	-	BSUIS_A0556	-	integrase catalytic subunit
529	 58.54	0	542117..542485	+	122	163842806	-	BSUIS_A0557	-	transposase
530	 50.89	-1	542482..542874	+	130	163842807	-	BSUIS_A0558	-	transposase for insertion sequence element IS6501
531	 54.17	0	542875..543114	+	79	163842808	-	BSUIS_A0559	-	transposase
532	 43.88	-2	543245..544363	+	372	163842809	-	BSUIS_A0560	-	mannosyltransferase
533	 57.18	0	544421..544789	+	122	163842810	-	BSUIS_A0561	-	hypothetical protein
534	 47.66	-2	544885..545226	+	113	163842811	-	BSUIS_A0562	-	transposase
535	 54.42	0	545316..545903	-	195	163842812	-	BSUIS_A0563	-	hypothetical protein
536	 60.84	0	546035..546463	+	142	163842813	-	BSUIS_A0564	-	hypothetical protein
537	 57.79	0	546382..546798	+	138	163842814	-	BSUIS_A0565	-	transposase for insertion sequence element IS6501
538	 50.15	-1	547688..549025	+	445	163842815	manB	BSUIS_A0566	-	phosphomannomutase
539	 51.23	-1	549050..550474	+	474	163842816	-	BSUIS_A0567	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
540	 51.32	-1	550507..551679	+	390	163842817	-	BSUIS_A0568	-	hypothetical protein
541	 51.26	-1	551762..552871	+	369	163842818	-	BSUIS_A0569	-	glycosyltransferase
542	 46.67	-2	553352..553531	-	59	163842819	-	BSUIS_A0570	-	hypothetical protein
543	 57.16	0	553563..555098	+	511	163842820	rbsA	BSUIS_A0571	-	ribose import ATP-binding protein rbsA
544	 56.89	0	555119..556120	+	333	163842821	-	BSUIS_A0572	-	monosaccharide-transporting ATPase
545	 57.01	0	556199..557161	+	320	163842822	-	BSUIS_A0573	-	hypothetical protein
546	 58.02	0	557219..558271	+	350	163842823	-	BSUIS_A0574	-	hypothetical protein
547	 59.76	0	558279..559451	+	390	163842824	-	BSUIS_A0575	-	oxidoreductase domain-containing protein
548	 56.12	0	559493..560800	-	435	163842825	xylA	BSUIS_A0576	-	xylose isomerase
549	 61.85	+1	560847..562298	-	483	163842826	xylB	BSUIS_A0577	-	xylulokinase
550	 59.30	0	562331..563362	-	343	163842827	degA	BSUIS_A0578	-	HTH-type transcriptional regulator degA
551	 57.70	0	563624..564694	-	356	163842828	-	BSUIS_A0579	-	helix-turn-helix domain-containing protein
552	 58.81	0	565233..566696	-	487	163842829	betB	BSUIS_A0580	-	betaine aldehyde dehydrogenase
553	 59.58	0	566882..568531	-	549	163842830	betA	BSUIS_A0581	-	choline dehydrogenase
554	 58.63	0	568534..569130	-	198	163842831	betI	BSUIS_A0582	-	transcriptional regulator BetI
555	 60.70	0	569321..570343	+	340	163842832	-	BSUIS_A0583	-	L-asparaginase II protein
556	 59.02	0	570388..570858	+	156	163842833	greA	BSUIS_A0584	-	transcription elongation factor GreA
557	 50.51	-1	570855..571244	-	129	163842834	-	BSUIS_A0585	-	death-on-curing family protein
558	 51.52	-1	571241..571471	-	76	163842835	-	BSUIS_A0586	-	addiction module antidote
559	 55.69	0	571532..572524	-	330	163842836	-	BSUIS_A0587	-	Mg2 transporter protein CorA family protein
560	 60.47	0	572680..573357	+	225	163842837	-	BSUIS_A0588	-	GntR domain-containing protein
561	 61.63	+1	573354..574664	+	436	163842838	-	BSUIS_A0589	-	major facilitator transporter
562	 60.88	0	574721..575083	-	120	163842839	-	BSUIS_A0590	-	hypothetical protein
563	 59.52	0	575419..576930	+	503	163842840	-	BSUIS_A0591	-	hypothetical protein
564	 60.81	0	577128..577844	-	238	163842841	-	BSUIS_A0592	-	ErfK/YbiS/YcfS/YnhG family protein
565	 58.26	0	578147..578800	-	217	163842842	dehII	BSUIS_A0593	-	haloacid dehalogenase, type II
566	 54.33	0	579023..579622	+	199	163842843	sodB	BSUIS_A0594	-	superoxide dismutase (Fe)
567	 56.42	0	579668..580243	+	191	163842844	-	BSUIS_A0595	-	hypothetical protein
568	 58.14	0	579794..580180	-	128	163842845	-	BSUIS_A0596	-	hypothetical protein
569	 57.75	0	580247..582355	-	702	163842846	ptrB	BSUIS_A0597	-	protease 2
570	 44.62	-2	582779..582973	+	64	163842847	-	BSUIS_A0598	-	hypothetical protein
571	 53.85	0	582928..583356	+	142	163842848	rosAR	BSUIS_A0599	-	transcriptional regulatory protein rosAr
572	 54.81	0	583564..583875	-	103	163842849	-	BSUIS_A0600	-	hypothetical protein
573	 57.02	0	584057..584512	+	151	163842850	-	BSUIS_A0601	-	hypothetical protein
574	 59.37	0	584509..585303	+	264	163842851	-	BSUIS_A0602	-	hypothetical protein
575	 60.16	0	585394..586731	+	445	163842852	iaaH	BSUIS_A0603	-	amidase
576	 59.62	0	586772..587197	-	141	163842853	-	BSUIS_A0604	-	hypothetical protein
577	 56.34	0	587277..587741	-	154	163842854	-	BSUIS_A0605	-	hypothetical protein
578	 59.23	0	588032..589861	+	609	163842855	-	BSUIS_A0606	-	integral membrane sensor signal transduction histidine kinase
579	 60.18	0	589788..590804	+	338	163842856	-	BSUIS_A0607	-	peptidoglycan binding domain-containing protein
580	 57.18	0	590818..591165	+	115	163842857	-	BSUIS_A0608	-	hypothetical protein
581	 58.50	0	591176..592252	-	358	163842858	-	BSUIS_A0609	-	hypothetical protein
582	 54.88	0	592450..592992	-	180	163842859	-	BSUIS_A0610	-	hypothetical protein
583	 62.91	+1	592985..593596	-	203	163842860	-	BSUIS_A0611	-	hypothetical protein
584	 59.20	0	593603..595759	-	718	163842861	-	BSUIS_A0612	-	1A family penicillin-binding protein
585	 60.04	0	596117..596629	+	170	163842862	-	BSUIS_A0613	-	hypothetical protein
586	 64.81	+1	596592..597827	+	411	163842863	-	BSUIS_A0614	-	hypothetical protein
587	 61.98	+1	597859..599052	+	397	163842864	-	BSUIS_A0615	-	HK97 family phage portal protein
588	 61.38	+1	599049..599426	+	125	163842865	-	BSUIS_A0616	-	hypothetical protein
589	 62.63	+1	599413..600081	+	222	163842866	-	BSUIS_A0617	-	HK97 family phage prohead protease
590	 60.08	0	600103..601377	+	424	163842867	-	BSUIS_A0618	-	HK97 family phage major capsid protein
591	 58.91	0	601542..602108	+	188	163842868	-	BSUIS_A0619	-	hypothetical protein
592	 58.11	0	602105..602443	+	112	163842869	-	BSUIS_A0620	-	phage head-tail adaptor
593	 55.95	0	602440..602607	+	55	163842870	-	BSUIS_A0621	-	hypothetical protein
594	 58.33	0	602567..602974	+	135	163842871	-	BSUIS_A0622	-	hypothetical protein
595	 58.70	0	603015..603428	+	137	163842872	-	BSUIS_A0623	-	TP901-1 family phage major tail protein
596	 62.28	+1	603425..603766	+	113	163842873	-	BSUIS_A0624	-	hypothetical protein
597	 63.37	+1	603985..604530	+	181	163842874	-	BSUIS_A0625	-	phage tail protein
598	 60.73	0	605134..606009	+	291	163842875	-	BSUIS_A0628	-	phage protein
599	 64.37	+1	606006..606440	+	144	163842876	-	BSUIS_A0629	-	cell wall endopeptidase
600	 56.04	0	610364..610570	+	68	163842877	-	BSUIS_A0632	-	hypothetical protein
601	 62.63	+1	610732..611028	+	98	163842878	-	BSUIS_A0633	-	hypothetical protein
602	 57.97	0	611107..611796	+	229	163842879	-	BSUIS_A0634	-	two component transcriptional regulator
603	 58.66	0	611946..613181	+	411	163842880	phoQ	BSUIS_A0635	-	sensor protein phoQ
604	 58.85	0	613242..613727	+	161	163842881	omp	BSUIS_A0636	-	17 kDa surface antigen precursor
605	 61.75	+1	613828..614967	+	379	163842882	-	BSUIS_A0637	-	cytochrome c-type biogenesis protein
606	 59.44	0	614964..615461	+	165	163842883	ccmE	BSUIS_A0638	-	cytochrome c-type biogenesis protein CcmE
607	 59.94	0	615481..617472	+	663	163842884	ccmF	BSUIS_A0639	-	cytochrome c-type biogenesis protein CcmF
608	 56.18	0	617469..617945	+	158	163842885	-	BSUIS_A0640	-	cytochrome c-type biogenesis protein ccl2 precursor
609	 60.51	0	618087..619628	+	513	163842886	degP	BSUIS_A0641	-	protease Do
610	 60.17	0	619722..620429	+	235	163842887	copR	BSUIS_A0642	-	transcriptional activator protein copR
611	 59.12	0	620429..621832	+	467	163842888	-	BSUIS_A0643	-	integral membrane sensor signal transduction histidine kinase
612	 58.20	0	621955..624906	+	983	163842889	glnE	BSUIS_A0644	-	glutamate-ammonia-ligase adenylyltransferase
613	 50.52	-1	624951..627062	-	703	163842890	lgtB	BSUIS_A0645	-	lacto-N-neotetraose biosynthesis glycosyl transferase lgtB
614	 60.67	0	627333..629684	-	783	163842891	-	BSUIS_A0646	-	PAS domain-containing protein
615	 59.31	0	630075..632726	-	883	163842892	pepN	BSUIS_A0647	-	aminopeptidase N
616	 58.60	0	632895..633911	+	338	163842893	-	BSUIS_A0648	-	hypothetical protein
617	 58.95	0	633916..635172	-	418	163842894	-	BSUIS_A0649	-	major facilitator transporter
618	 61.63	+1	635334..636206	-	290	163842895	-	BSUIS_A0650	-	uracil-DNA glycosylase
619	 59.34	0	636595..638286	+	563	163842896	-	BSUIS_A0651	-	electron transfer flavoprotein-ubiquinone oxidoreductase
620	 59.24	0	638398..639474	-	358	163842897	-	BSUIS_A0652	-	hypothetical protein
621	 58.42	0	639527..641029	-	500	163842898	amn	BSUIS_A0653	-	AMP nucleosidase
622	 55.35	0	641082..641240	+	52	163842899	-	BSUIS_A0654	-	hypothetical protein
57.01	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.